data_5V03 # _model_server_result.job_id t0-ste7hda2kVU9GME7OEA _model_server_result.datetime_utc '2024-12-03 00:43:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 5V03 # _exptl.entry_id 5V03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.95 _cell.angle_gamma 90 _cell.entry_id 5V03 _cell.length_a 77.092 _cell.length_b 66.882 _cell.length_c 65.381 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 21 R ASP 20 1_555 F CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 B OD1 ASP 23 R ASP 22 1_555 F CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 B OD1 ASP 25 R ASP 24 1_555 F CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc4 B O THR 27 R THR 26 1_555 F CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 B OE1 GLU 32 R GLU 31 1_555 F CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc6 B OE2 GLU 32 R GLU 31 1_555 F CA CA . R CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc7 B OD1 ASP 57 R ASP 56 1_555 E CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.842 ? metalc ? metalc8 B OD1 ASP 59 R ASP 58 1_555 E CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc9 B OD1 ASN 61 R ASN 60 1_555 E CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc10 B O THR 63 R THR 62 1_555 E CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc11 B OE1 GLU 68 R GLU 67 1_555 E CA CA . R CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc12 F CA CA . R CA 203 1_555 H O HOH . R HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5V03 _atom_sites.fract_transf_matrix[1][1] 0.012972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000896 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014952 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 B 1 501 1 SO4 SO4 . D 4 658 R 1 201 1 658 PFE . E 5 CA R 1 202 1001 CA CA . F 5 CA R 1 203 1002 CA CA . G 6 HOH B 1 601 47 HOH HOH . G 6 HOH B 2 602 187 HOH HOH . G 6 HOH B 3 603 94 HOH HOH . G 6 HOH B 4 604 109 HOH HOH . G 6 HOH B 5 605 15 HOH HOH . G 6 HOH B 6 606 41 HOH HOH . G 6 HOH B 7 607 29 HOH HOH . G 6 HOH B 8 608 104 HOH HOH . G 6 HOH B 9 609 139 HOH HOH . G 6 HOH B 10 610 69 HOH HOH . G 6 HOH B 11 611 50 HOH HOH . G 6 HOH B 12 612 66 HOH HOH . G 6 HOH B 13 613 25 HOH HOH . G 6 HOH B 14 614 123 HOH HOH . G 6 HOH B 15 615 21 HOH HOH . G 6 HOH B 16 616 189 HOH HOH . G 6 HOH B 17 617 71 HOH HOH . G 6 HOH B 18 618 46 HOH HOH . G 6 HOH B 19 619 113 HOH HOH . G 6 HOH B 20 620 177 HOH HOH . G 6 HOH B 21 621 10 HOH HOH . G 6 HOH B 22 622 165 HOH HOH . G 6 HOH B 23 623 176 HOH HOH . G 6 HOH B 24 624 183 HOH HOH . G 6 HOH B 25 625 9 HOH HOH . G 6 HOH B 26 626 72 HOH HOH . G 6 HOH B 27 627 179 HOH HOH . G 6 HOH B 28 628 35 HOH HOH . G 6 HOH B 29 629 146 HOH HOH . G 6 HOH B 30 630 36 HOH HOH . G 6 HOH B 31 631 57 HOH HOH . G 6 HOH B 32 632 181 HOH HOH . G 6 HOH B 33 633 132 HOH HOH . G 6 HOH B 34 634 164 HOH HOH . G 6 HOH B 35 635 86 HOH HOH . G 6 HOH B 36 636 68 HOH HOH . G 6 HOH B 37 637 23 HOH HOH . G 6 HOH B 38 638 136 HOH HOH . G 6 HOH B 39 639 161 HOH HOH . G 6 HOH B 40 640 96 HOH HOH . G 6 HOH B 41 641 114 HOH HOH . G 6 HOH B 42 642 38 HOH HOH . G 6 HOH B 43 643 63 HOH HOH . G 6 HOH B 44 644 103 HOH HOH . G 6 HOH B 45 645 88 HOH HOH . G 6 HOH B 46 646 99 HOH HOH . G 6 HOH B 47 647 130 HOH HOH . G 6 HOH B 48 648 67 HOH HOH . G 6 HOH B 49 649 92 HOH HOH . G 6 HOH B 50 650 133 HOH HOH . G 6 HOH B 51 651 128 HOH HOH . G 6 HOH B 52 652 163 HOH HOH . G 6 HOH B 53 653 101 HOH HOH . G 6 HOH B 54 654 153 HOH HOH . G 6 HOH B 55 655 53 HOH HOH . G 6 HOH B 56 656 149 HOH HOH . G 6 HOH B 57 658 178 HOH HOH . G 6 HOH B 58 659 127 HOH HOH . G 6 HOH B 59 660 89 HOH HOH . G 6 HOH B 60 661 117 HOH HOH . G 6 HOH B 61 662 110 HOH HOH . H 6 HOH R 1 301 54 HOH HOH . H 6 HOH R 2 302 80 HOH HOH . H 6 HOH R 3 303 37 HOH HOH . H 6 HOH R 4 304 45 HOH HOH . H 6 HOH R 5 305 106 HOH HOH . H 6 HOH R 6 306 185 HOH HOH . H 6 HOH R 7 307 26 HOH HOH . H 6 HOH R 8 308 11 HOH HOH . H 6 HOH R 9 309 3 HOH HOH . H 6 HOH R 10 310 48 HOH HOH . H 6 HOH R 11 311 182 HOH HOH . H 6 HOH R 12 312 98 HOH HOH . H 6 HOH R 13 313 120 HOH HOH . H 6 HOH R 14 314 121 HOH HOH . H 6 HOH R 15 315 55 HOH HOH . H 6 HOH R 16 316 28 HOH HOH . H 6 HOH R 17 317 79 HOH HOH . H 6 HOH R 18 318 97 HOH HOH . H 6 HOH R 19 319 137 HOH HOH . H 6 HOH R 20 320 160 HOH HOH . H 6 HOH R 21 321 157 HOH HOH . H 6 HOH R 22 322 8 HOH HOH . H 6 HOH R 23 323 16 HOH HOH . H 6 HOH R 24 324 143 HOH HOH . H 6 HOH R 25 325 85 HOH HOH . H 6 HOH R 26 326 90 HOH HOH . H 6 HOH R 27 327 20 HOH HOH . H 6 HOH R 28 328 12 HOH HOH . H 6 HOH R 29 329 162 HOH HOH . H 6 HOH R 30 330 180 HOH HOH . H 6 HOH R 31 331 116 HOH HOH . H 6 HOH R 32 332 4 HOH HOH . H 6 HOH R 33 333 141 HOH HOH . H 6 HOH R 34 334 76 HOH HOH . H 6 HOH R 35 335 119 HOH HOH . H 6 HOH R 36 336 1 HOH HOH . H 6 HOH R 37 337 154 HOH HOH . H 6 HOH R 38 338 140 HOH HOH . H 6 HOH R 39 339 135 HOH HOH . H 6 HOH R 40 340 5 HOH HOH . H 6 HOH R 41 341 184 HOH HOH . H 6 HOH R 42 342 43 HOH HOH . H 6 HOH R 43 343 24 HOH HOH . H 6 HOH R 44 344 30 HOH HOH . H 6 HOH R 45 345 82 HOH HOH . H 6 HOH R 46 346 168 HOH HOH . H 6 HOH R 47 347 77 HOH HOH . H 6 HOH R 48 348 27 HOH HOH . H 6 HOH R 49 349 31 HOH HOH . H 6 HOH R 50 350 73 HOH HOH . H 6 HOH R 51 351 102 HOH HOH . H 6 HOH R 52 352 100 HOH HOH . H 6 HOH R 53 353 166 HOH HOH . H 6 HOH R 54 354 172 HOH HOH . H 6 HOH R 55 355 78 HOH HOH . H 6 HOH R 56 356 7 HOH HOH . H 6 HOH R 57 357 175 HOH HOH . H 6 HOH R 58 358 17 HOH HOH . H 6 HOH R 59 359 95 HOH HOH . H 6 HOH R 60 360 32 HOH HOH . H 6 HOH R 61 361 59 HOH HOH . H 6 HOH R 62 362 81 HOH HOH . H 6 HOH R 63 363 40 HOH HOH . H 6 HOH R 64 364 155 HOH HOH . H 6 HOH R 65 365 126 HOH HOH . H 6 HOH R 66 366 52 HOH HOH . H 6 HOH R 67 367 62 HOH HOH . H 6 HOH R 68 368 39 HOH HOH . H 6 HOH R 69 369 75 HOH HOH . H 6 HOH R 70 370 93 HOH HOH . H 6 HOH R 71 371 107 HOH HOH . H 6 HOH R 72 372 150 HOH HOH . H 6 HOH R 73 373 65 HOH HOH . H 6 HOH R 74 374 125 HOH HOH . H 6 HOH R 75 375 131 HOH HOH . H 6 HOH R 76 376 70 HOH HOH . H 6 HOH R 77 377 147 HOH HOH . H 6 HOH R 78 378 51 HOH HOH . H 6 HOH R 79 379 14 HOH HOH . H 6 HOH R 80 380 19 HOH HOH . H 6 HOH R 81 381 186 HOH HOH . H 6 HOH R 82 382 87 HOH HOH . H 6 HOH R 83 383 158 HOH HOH . H 6 HOH R 84 384 61 HOH HOH . H 6 HOH R 85 385 174 HOH HOH . H 6 HOH R 86 386 18 HOH HOH . H 6 HOH R 87 387 49 HOH HOH . H 6 HOH R 88 388 142 HOH HOH . H 6 HOH R 89 389 64 HOH HOH . H 6 HOH R 90 390 44 HOH HOH . H 6 HOH R 91 391 60 HOH HOH . H 6 HOH R 92 392 111 HOH HOH . H 6 HOH R 93 393 171 HOH HOH . H 6 HOH R 94 394 74 HOH HOH . H 6 HOH R 95 395 118 HOH HOH . H 6 HOH R 96 396 148 HOH HOH . H 6 HOH R 97 397 115 HOH HOH . H 6 HOH R 98 398 124 HOH HOH . H 6 HOH R 99 399 22 HOH HOH . H 6 HOH R 100 400 138 HOH HOH . H 6 HOH R 101 401 169 HOH HOH . H 6 HOH R 102 402 151 HOH HOH . H 6 HOH R 103 403 173 HOH HOH . H 6 HOH R 104 404 170 HOH HOH . H 6 HOH R 105 405 84 HOH HOH . H 6 HOH R 106 406 58 HOH HOH . H 6 HOH R 107 407 112 HOH HOH . H 6 HOH R 108 408 129 HOH HOH . H 6 HOH R 109 409 134 HOH HOH . H 6 HOH R 110 410 191 HOH HOH . H 6 HOH R 111 411 145 HOH HOH . H 6 HOH R 112 412 159 HOH HOH . H 6 HOH R 113 413 188 HOH HOH . H 6 HOH R 114 414 83 HOH HOH . H 6 HOH R 115 415 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 41.003 _atom_site.Cartn_y 44.948 _atom_site.Cartn_z 58.108 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.47 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id R _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #