data_5V0D # _model_server_result.job_id bc4HJgud7PCBWp6ykJEpGQ _model_server_result.datetime_utc '2025-03-05 02:24:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":402}' # _entry.id 5V0D # _exptl.entry_id 5V0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V0D _cell.length_a 72.976 _cell.length_b 72.976 _cell.length_c 180.612 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 152 Z ASP 152 1_555 E MG MG . Z MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc2 A OD2 ASP 152 Z ASP 152 1_555 F MG MG . Z MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc3 A OD2 ASP 171 Z ASP 171 1_555 E MG MG . Z MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc4 A OD1 ASP 173 Z ASP 173 1_555 E MG MG . Z MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc5 A O SER 222 Z SER 222 1_555 G NA NA . Z NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc6 A OG SER 229 Z SER 229 1_555 G NA NA . Z NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc7 A O ILE 233 Z ILE 233 1_555 G NA NA . Z NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc8 E MG MG . Z MG 401 1_555 H O HOH . Z HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc9 E MG MG . Z MG 401 1_555 C OP3 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc10 E MG MG . Z MG 401 1_555 C OP2 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc11 F MG MG . Z MG 402 1_555 H O HOH . Z HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc12 F MG MG . Z MG 402 1_555 H O HOH . Z HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc13 F MG MG . Z MG 402 1_555 C OP2 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc14 F MG MG . Z MG 402 1_555 J O HOH . B HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc15 F MG MG . Z MG 402 1_555 D O3' DA 3 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc16 G NA NA . Z NA 403 1_555 H O HOH . Z HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc17 G NA NA . Z NA 403 1_555 B OP2 DT 4 A DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc18 G NA NA . Z NA 403 1_555 I O HOH . A HOH 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 A DC 1 1_555 C N1 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 A DC 1 1_555 C O6 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 A DC 1 1_555 C N2 DG 9 B DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 A DG 2 1_555 C N3 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 A DG 2 1_555 C O2 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 A DG 2 1_555 C N4 DC 8 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 3 A DC 3 1_555 C N1 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 3 A DC 3 1_555 C O6 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 3 A DC 3 1_555 C N2 DG 7 B DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 4 A DT 4 1_555 C N1 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 4 A DT 4 1_555 C N6 DA 6 B DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 A DA 5 1_555 C N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 A DA 5 1_555 C O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 6 A DG 6 1_555 C N3 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N2 DG 6 A DG 6 1_555 C O2 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O6 DG 6 A DG 6 1_555 C N4 DC 4 B DC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DT 7 A DT 7 1_555 C N1 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 DT 7 A DT 7 1_555 C N6 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DA 8 A DA 8 1_555 C N3 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N6 DA 8 A DA 8 1_555 C O4 DT 2 B DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N3 DC 9 A DC 9 1_555 C N1 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N4 DC 9 A DC 9 1_555 C O6 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B O2 DC 9 A DC 9 1_555 C N2 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N3 DT 10 A DT 10 1_555 D N1 DA 3 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B O4 DT 10 A DT 10 1_555 D N6 DA 3 E DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5V0D _atom_sites.fract_transf_matrix[1][1] 0.013703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG Z 1 401 401 MG MG . F 5 MG Z 1 402 402 MG MG . G 6 NA Z 1 403 403 NA NA . H 7 HOH Z 1 501 501 HOH HOH . H 7 HOH Z 2 502 502 HOH HOH . H 7 HOH Z 3 503 503 HOH HOH . H 7 HOH Z 4 504 504 HOH HOH . H 7 HOH Z 5 505 505 HOH HOH . H 7 HOH Z 6 506 506 HOH HOH . H 7 HOH Z 7 507 507 HOH HOH . H 7 HOH Z 8 508 508 HOH HOH . H 7 HOH Z 9 509 509 HOH HOH . H 7 HOH Z 10 510 510 HOH HOH . H 7 HOH Z 11 511 511 HOH HOH . H 7 HOH Z 12 512 512 HOH HOH . H 7 HOH Z 13 513 513 HOH HOH . H 7 HOH Z 14 514 514 HOH HOH . H 7 HOH Z 15 515 515 HOH HOH . H 7 HOH Z 16 516 516 HOH HOH . H 7 HOH Z 17 517 517 HOH HOH . H 7 HOH Z 18 518 518 HOH HOH . H 7 HOH Z 19 519 519 HOH HOH . H 7 HOH Z 20 520 520 HOH HOH . H 7 HOH Z 21 521 521 HOH HOH . H 7 HOH Z 22 522 522 HOH HOH . H 7 HOH Z 23 523 523 HOH HOH . H 7 HOH Z 24 524 524 HOH HOH . H 7 HOH Z 25 525 525 HOH HOH . H 7 HOH Z 26 526 526 HOH HOH . H 7 HOH Z 27 527 527 HOH HOH . H 7 HOH Z 28 528 528 HOH HOH . H 7 HOH Z 29 529 529 HOH HOH . H 7 HOH Z 30 530 530 HOH HOH . H 7 HOH Z 31 531 531 HOH HOH . H 7 HOH Z 32 532 532 HOH HOH . H 7 HOH Z 33 533 533 HOH HOH . H 7 HOH Z 34 534 534 HOH HOH . H 7 HOH Z 35 535 535 HOH HOH . H 7 HOH Z 36 536 536 HOH HOH . H 7 HOH Z 37 537 537 HOH HOH . H 7 HOH Z 38 538 538 HOH HOH . H 7 HOH Z 39 539 539 HOH HOH . H 7 HOH Z 40 540 540 HOH HOH . H 7 HOH Z 41 541 541 HOH HOH . H 7 HOH Z 42 542 542 HOH HOH . H 7 HOH Z 43 543 543 HOH HOH . H 7 HOH Z 44 544 544 HOH HOH . H 7 HOH Z 45 545 545 HOH HOH . H 7 HOH Z 46 546 546 HOH HOH . H 7 HOH Z 47 547 547 HOH HOH . H 7 HOH Z 48 548 548 HOH HOH . H 7 HOH Z 49 549 549 HOH HOH . H 7 HOH Z 50 550 550 HOH HOH . H 7 HOH Z 51 551 551 HOH HOH . H 7 HOH Z 52 552 552 HOH HOH . H 7 HOH Z 53 553 553 HOH HOH . H 7 HOH Z 54 554 554 HOH HOH . H 7 HOH Z 55 555 555 HOH HOH . H 7 HOH Z 56 556 556 HOH HOH . H 7 HOH Z 57 557 557 HOH HOH . H 7 HOH Z 58 558 558 HOH HOH . I 7 HOH A 1 101 101 HOH HOH . I 7 HOH A 2 102 102 HOH HOH . I 7 HOH A 3 103 103 HOH HOH . I 7 HOH A 4 104 104 HOH HOH . I 7 HOH A 5 105 105 HOH HOH . J 7 HOH B 1 101 101 HOH HOH . J 7 HOH B 2 102 102 HOH HOH . J 7 HOH B 3 103 103 HOH HOH . J 7 HOH B 4 104 104 HOH HOH . J 7 HOH B 5 105 105 HOH HOH . J 7 HOH B 6 106 106 HOH HOH . J 7 HOH B 7 107 107 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 5 _atom_site.Cartn_x -8.976 _atom_site.Cartn_y 34.451 _atom_site.Cartn_z -3.245 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 69.83 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id Z _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 491 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #