data_5V0E # _model_server_result.job_id MhROmKT-XayuQoOcCg7Y7Q _model_server_result.datetime_utc '2024-12-13 13:01:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 5V0E # _exptl.entry_id 5V0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V0E _cell.length_a 72.776 _cell.length_b 72.776 _cell.length_c 181.201 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O SER 222 Z SER 222 1_555 D NA NA . Z NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc2 A OG SER 229 Z SER 229 1_555 D NA NA . Z NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc3 A O ILE 233 Z ILE 233 1_555 D NA NA . Z NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 D NA NA . Z NA 401 1_555 B OP2 DA 5 A DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc5 D NA NA . Z NA 401 1_555 F O HOH . A HOH 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 A DC 1 1_555 C N1 DG 14 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 A DC 1 1_555 C O6 DG 14 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 A DC 1 1_555 C N2 DG 14 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 A DG 2 1_555 C N3 DC 13 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 A DG 2 1_555 C O2 DC 13 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 A DG 2 1_555 C N4 DC 13 B DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N3 DC 3 A DC 3 1_555 C N1 DG 12 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N4 DC 3 A DC 3 1_555 C O6 DG 12 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O2 DC 3 A DC 3 1_555 C N2 DG 12 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DT 4 A DT 4 1_555 C N1 DA 11 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O4 DT 4 A DT 4 1_555 C N6 DA 11 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 DA 5 A DA 5 1_555 C N3 DT 10 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 DA 5 A DA 5 1_555 C O4 DT 10 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N1 DG 6 A DG 6 1_555 C N3 DC 9 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N2 DG 6 A DG 6 1_555 C O2 DC 9 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O6 DG 6 A DG 6 1_555 C N4 DC 9 B DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DT 7 A DT 7 1_555 C N1 DA 8 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 DT 7 A DT 7 1_555 C N6 DA 8 B DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N1 DG 8 A DG 8 1_555 C N3 DC 7 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N2 DG 8 A DG 8 1_555 C O2 DC 7 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O6 DG 8 A DG 8 1_555 C N4 DC 7 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 DA 9 A DA 9 1_555 C N3 DT 6 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N6 DA 9 A DA 9 1_555 C O4 DT 6 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog24 B N3 DT 10 A DT 10 1_555 C O6 DG 5 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog25 B O2 DT 10 A DT 10 1_555 C N1 DG 5 B DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5V0E _atom_sites.fract_transf_matrix[1][1] 0.013741 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005519 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA Z 1 401 1 NA NA . E 5 HOH Z 1 501 43 HOH HOH . E 5 HOH Z 2 502 7 HOH HOH . E 5 HOH Z 3 503 19 HOH HOH . E 5 HOH Z 4 504 32 HOH HOH . E 5 HOH Z 5 505 49 HOH HOH . E 5 HOH Z 6 506 22 HOH HOH . E 5 HOH Z 7 507 14 HOH HOH . E 5 HOH Z 8 508 42 HOH HOH . E 5 HOH Z 9 509 53 HOH HOH . E 5 HOH Z 10 510 23 HOH HOH . E 5 HOH Z 11 511 30 HOH HOH . E 5 HOH Z 12 512 3 HOH HOH . E 5 HOH Z 13 513 15 HOH HOH . E 5 HOH Z 14 514 6 HOH HOH . E 5 HOH Z 15 515 24 HOH HOH . E 5 HOH Z 16 516 1 HOH HOH . E 5 HOH Z 17 517 8 HOH HOH . E 5 HOH Z 18 518 54 HOH HOH . E 5 HOH Z 19 519 12 HOH HOH . E 5 HOH Z 20 520 36 HOH HOH . E 5 HOH Z 21 521 41 HOH HOH . E 5 HOH Z 22 522 11 HOH HOH . E 5 HOH Z 23 523 48 HOH HOH . E 5 HOH Z 24 524 27 HOH HOH . E 5 HOH Z 25 525 21 HOH HOH . E 5 HOH Z 26 526 52 HOH HOH . E 5 HOH Z 27 527 33 HOH HOH . E 5 HOH Z 28 528 10 HOH HOH . E 5 HOH Z 29 529 18 HOH HOH . E 5 HOH Z 30 530 20 HOH HOH . E 5 HOH Z 31 531 4 HOH HOH . E 5 HOH Z 32 532 47 HOH HOH . E 5 HOH Z 33 533 44 HOH HOH . E 5 HOH Z 34 534 26 HOH HOH . E 5 HOH Z 35 535 16 HOH HOH . E 5 HOH Z 36 536 51 HOH HOH . E 5 HOH Z 37 537 39 HOH HOH . E 5 HOH Z 38 538 29 HOH HOH . E 5 HOH Z 39 539 2 HOH HOH . E 5 HOH Z 40 540 25 HOH HOH . E 5 HOH Z 41 541 45 HOH HOH . E 5 HOH Z 42 542 28 HOH HOH . E 5 HOH Z 43 543 35 HOH HOH . F 5 HOH A 1 101 9 HOH HOH . F 5 HOH A 2 102 31 HOH HOH . F 5 HOH A 3 103 34 HOH HOH . F 5 HOH A 4 104 40 HOH HOH . F 5 HOH A 5 105 37 HOH HOH . F 5 HOH A 6 106 5 HOH HOH . G 5 HOH B 1 101 46 HOH HOH . G 5 HOH B 2 102 38 HOH HOH . G 5 HOH B 3 103 13 HOH HOH . G 5 HOH B 4 104 50 HOH HOH . G 5 HOH B 5 105 17 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -20.354 _atom_site.Cartn_y 45.146 _atom_site.Cartn_z -12.82 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 62.78 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id Z _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #