data_5V0I
#
_model_server_result.job_id            KvyrwSAVDNdA4aO6QmKlYg 
_model_server_result.datetime_utc      '2024-11-18 21:47:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v0i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    5V0I 
#
_exptl.entry_id    5V0I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V0I 
_cell.length_a            46.745 
_cell.length_b            110.807 
_cell.length_c            128.599 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V0I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     5V0I 
_atom_sites.fract_transf_matrix[1][1]    0.021393 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009025 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007776 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 401 340 AMP AMP . 
D 3 TRP A 1 402 341 TRP TRP . 
E 4 FMT A 1 403 342 FMT FMT . 
F 4 FMT A 1 404 343 FMT FMT . 
G 2 AMP B 1 401 340 AMP AMP . 
H 3 TRP B 1 402 341 TRP TRP . 
I 4 FMT B 1 403 342 FMT FMT . 
J 4 FMT B 1 404 343 FMT FMT . 
K 5 HOH A 1 501 124 HOH HOH . 
K 5 HOH A 2 502 121 HOH HOH . 
K 5 HOH A 3 503 99 HOH HOH . 
K 5 HOH A 4 504 89 HOH HOH . 
K 5 HOH A 5 505 19 HOH HOH . 
K 5 HOH A 6 506 84 HOH HOH . 
K 5 HOH A 7 507 73 HOH HOH . 
K 5 HOH A 8 508 57 HOH HOH . 
K 5 HOH A 9 509 111 HOH HOH . 
K 5 HOH A 10 510 65 HOH HOH . 
K 5 HOH A 11 511 58 HOH HOH . 
K 5 HOH A 12 512 95 HOH HOH . 
K 5 HOH A 13 513 110 HOH HOH . 
K 5 HOH A 14 514 2 HOH HOH . 
K 5 HOH A 15 515 18 HOH HOH . 
K 5 HOH A 16 516 12 HOH HOH . 
K 5 HOH A 17 517 74 HOH HOH . 
K 5 HOH A 18 518 75 HOH HOH . 
K 5 HOH A 19 519 123 HOH HOH . 
K 5 HOH A 20 520 120 HOH HOH . 
K 5 HOH A 21 521 21 HOH HOH . 
K 5 HOH A 22 522 23 HOH HOH . 
K 5 HOH A 23 523 4 HOH HOH . 
K 5 HOH A 24 524 77 HOH HOH . 
K 5 HOH A 25 525 41 HOH HOH . 
K 5 HOH A 26 526 114 HOH HOH . 
K 5 HOH A 27 527 49 HOH HOH . 
K 5 HOH A 28 528 9 HOH HOH . 
K 5 HOH A 29 529 35 HOH HOH . 
K 5 HOH A 30 530 37 HOH HOH . 
K 5 HOH A 31 531 33 HOH HOH . 
K 5 HOH A 32 532 85 HOH HOH . 
K 5 HOH A 33 533 43 HOH HOH . 
K 5 HOH A 34 534 14 HOH HOH . 
K 5 HOH A 35 535 3 HOH HOH . 
K 5 HOH A 36 536 7 HOH HOH . 
K 5 HOH A 37 537 68 HOH HOH . 
K 5 HOH A 38 538 109 HOH HOH . 
K 5 HOH A 39 539 98 HOH HOH . 
K 5 HOH A 40 540 112 HOH HOH . 
K 5 HOH A 41 541 82 HOH HOH . 
K 5 HOH A 42 542 39 HOH HOH . 
K 5 HOH A 43 543 52 HOH HOH . 
K 5 HOH A 44 544 34 HOH HOH . 
K 5 HOH A 45 545 113 HOH HOH . 
K 5 HOH A 46 546 45 HOH HOH . 
K 5 HOH A 47 547 88 HOH HOH . 
K 5 HOH A 48 548 11 HOH HOH . 
K 5 HOH A 49 549 106 HOH HOH . 
K 5 HOH A 50 550 20 HOH HOH . 
K 5 HOH A 51 551 53 HOH HOH . 
K 5 HOH A 52 552 103 HOH HOH . 
K 5 HOH A 53 553 55 HOH HOH . 
K 5 HOH A 54 554 40 HOH HOH . 
K 5 HOH A 55 555 80 HOH HOH . 
K 5 HOH A 56 556 87 HOH HOH . 
K 5 HOH A 57 557 101 HOH HOH . 
K 5 HOH A 58 558 46 HOH HOH . 
K 5 HOH A 59 559 100 HOH HOH . 
K 5 HOH A 60 560 102 HOH HOH . 
K 5 HOH A 61 561 119 HOH HOH . 
K 5 HOH A 62 562 86 HOH HOH . 
K 5 HOH A 63 563 107 HOH HOH . 
K 5 HOH A 64 564 122 HOH HOH . 
K 5 HOH A 65 565 56 HOH HOH . 
K 5 HOH A 66 566 96 HOH HOH . 
K 5 HOH A 67 567 116 HOH HOH . 
K 5 HOH A 68 568 78 HOH HOH . 
L 5 HOH B 1 501 97 HOH HOH . 
L 5 HOH B 2 502 50 HOH HOH . 
L 5 HOH B 3 503 6 HOH HOH . 
L 5 HOH B 4 504 108 HOH HOH . 
L 5 HOH B 5 505 8 HOH HOH . 
L 5 HOH B 6 506 129 HOH HOH . 
L 5 HOH B 7 507 10 HOH HOH . 
L 5 HOH B 8 508 93 HOH HOH . 
L 5 HOH B 9 509 17 HOH HOH . 
L 5 HOH B 10 510 70 HOH HOH . 
L 5 HOH B 11 511 30 HOH HOH . 
L 5 HOH B 12 512 62 HOH HOH . 
L 5 HOH B 13 513 5 HOH HOH . 
L 5 HOH B 14 514 22 HOH HOH . 
L 5 HOH B 15 515 92 HOH HOH . 
L 5 HOH B 16 516 105 HOH HOH . 
L 5 HOH B 17 517 54 HOH HOH . 
L 5 HOH B 18 518 81 HOH HOH . 
L 5 HOH B 19 519 125 HOH HOH . 
L 5 HOH B 20 520 117 HOH HOH . 
L 5 HOH B 21 521 29 HOH HOH . 
L 5 HOH B 22 522 127 HOH HOH . 
L 5 HOH B 23 523 28 HOH HOH . 
L 5 HOH B 24 524 115 HOH HOH . 
L 5 HOH B 25 525 66 HOH HOH . 
L 5 HOH B 26 526 128 HOH HOH . 
L 5 HOH B 27 527 26 HOH HOH . 
L 5 HOH B 28 528 132 HOH HOH . 
L 5 HOH B 29 529 48 HOH HOH . 
L 5 HOH B 30 530 31 HOH HOH . 
L 5 HOH B 31 531 15 HOH HOH . 
L 5 HOH B 32 532 44 HOH HOH . 
L 5 HOH B 33 533 16 HOH HOH . 
L 5 HOH B 34 534 67 HOH HOH . 
L 5 HOH B 35 535 24 HOH HOH . 
L 5 HOH B 36 536 83 HOH HOH . 
L 5 HOH B 37 537 32 HOH HOH . 
L 5 HOH B 38 538 131 HOH HOH . 
L 5 HOH B 39 539 76 HOH HOH . 
L 5 HOH B 40 540 90 HOH HOH . 
L 5 HOH B 41 541 59 HOH HOH . 
L 5 HOH B 42 542 51 HOH HOH . 
L 5 HOH B 43 543 118 HOH HOH . 
L 5 HOH B 44 544 13 HOH HOH . 
L 5 HOH B 45 545 27 HOH HOH . 
L 5 HOH B 46 546 38 HOH HOH . 
L 5 HOH B 47 547 61 HOH HOH . 
L 5 HOH B 48 548 47 HOH HOH . 
L 5 HOH B 49 549 94 HOH HOH . 
L 5 HOH B 50 550 69 HOH HOH . 
L 5 HOH B 51 551 104 HOH HOH . 
L 5 HOH B 52 552 71 HOH HOH . 
L 5 HOH B 53 553 60 HOH HOH . 
L 5 HOH B 54 554 36 HOH HOH . 
L 5 HOH B 55 555 126 HOH HOH . 
L 5 HOH B 56 556 25 HOH HOH . 
L 5 HOH B 57 557 130 HOH HOH . 
L 5 HOH B 58 558 79 HOH HOH . 
L 5 HOH B 59 559 1 HOH HOH . 
L 5 HOH B 60 560 63 HOH HOH . 
L 5 HOH B 61 561 91 HOH HOH . 
L 5 HOH B 62 562 42 HOH HOH . 
L 5 HOH B 63 563 64 HOH HOH . 
L 5 HOH B 64 564 72 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 2 20.751 4.16 10.32 1 88.93 ? P AMP 401 A 1 
HETATM 2 O O1P AMP . . . C 2 22.227 4.498 10.258 1 84.93 ? O1P AMP 401 A 1 
HETATM 3 O O2P AMP . . . C 2 20.439 2.848 11.005 1 88.64 ? O2P AMP 401 A 1 
HETATM 4 O O3P AMP . . . C 2 19.854 5.315 10.706 1 89.48 ? O3P AMP 401 A 1 
HETATM 5 O O5' AMP . . . C 2 20.328 3.854 8.819 1 86.13 ? O5' AMP 401 A 1 
HETATM 6 C C5' AMP . . . C 2 19.207 3.024 8.536 1 86.09 ? C5' AMP 401 A 1 
HETATM 7 C C4' AMP . . . C 2 18.798 3.142 7.091 1 88.09 ? C4' AMP 401 A 1 
HETATM 8 O O4' AMP . . . C 2 19.979 3.12 6.266 1 88.29 ? O4' AMP 401 A 1 
HETATM 9 C C3' AMP . . . C 2 17.876 2.057 6.561 1 89.74 ? C3' AMP 401 A 1 
HETATM 10 O O3' AMP . . . C 2 16.99 2.617 5.594 1 88.41 ? O3' AMP 401 A 1 
HETATM 11 C C2' AMP . . . C 2 18.822 1.059 5.881 1 92.6 ? C2' AMP 401 A 1 
HETATM 12 O O2' AMP . . . C 2 18.309 0.496 4.689 1 97.35 ? O2' AMP 401 A 1 
HETATM 13 C C1' AMP . . . C 2 20.1 1.873 5.607 1 87.08 ? C1' AMP 401 A 1 
HETATM 14 N N9 AMP . . . C 2 21.33 1.223 6.086 1 77.46 ? N9 AMP 401 A 1 
HETATM 15 C C8 AMP . . . C 2 21.979 1.477 7.247 1 65.19 ? C8 AMP 401 A 1 
HETATM 16 N N7 AMP . . . C 2 23.082 0.697 7.376 1 61.28 ? N7 AMP 401 A 1 
HETATM 17 C C5 AMP . . . C 2 23.162 -0.079 6.276 1 58.47 ? C5 AMP 401 A 1 
HETATM 18 C C6 AMP . . . C 2 24.089 -1.12 5.763 1 57.5 ? C6 AMP 401 A 1 
HETATM 19 N N6 AMP . . . C 2 25.189 -1.521 6.457 1 47.86 ? N6 AMP 401 A 1 
HETATM 20 N N1 AMP . . . C 2 23.788 -1.674 4.565 1 65 ? N1 AMP 401 A 1 
HETATM 21 C C2 AMP . . . C 2 22.706 -1.302 3.85 1 65.13 ? C2 AMP 401 A 1 
HETATM 22 N N3 AMP . . . C 2 21.828 -0.359 4.248 1 62.57 ? N3 AMP 401 A 1 
HETATM 23 C C4 AMP . . . C 2 22.005 0.275 5.431 1 65.64 ? C4 AMP 401 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#