data_5V0I # _model_server_result.job_id 7H2R4vFvc_gkC2H7YROgcA _model_server_result.datetime_utc '2024-11-18 21:47:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v0i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 5V0I # _exptl.entry_id 5V0I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V0I _cell.length_a 46.745 _cell.length_b 110.807 _cell.length_c 128.599 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V0I _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 349 n n N H TRP sing 350 n n N H2 TRP sing 351 n n CA C TRP sing 352 n n CA CB TRP sing 353 n n CA HA TRP sing 354 n n C O TRP doub 355 n n C OXT TRP sing 356 n n CB CG TRP sing 357 n n CB HB2 TRP sing 358 n n CB HB3 TRP sing 359 n n CG CD1 TRP doub 360 n y CG CD2 TRP sing 361 n y CD1 NE1 TRP sing 362 n y CD1 HD1 TRP sing 363 n n CD2 CE2 TRP doub 364 n y CD2 CE3 TRP sing 365 n y NE1 CE2 TRP sing 366 n y NE1 HE1 TRP sing 367 n n CE2 CZ2 TRP sing 368 n y CE3 CZ3 TRP doub 369 n y CE3 HE3 TRP sing 370 n n CZ2 CH2 TRP doub 371 n y CZ2 HZ2 TRP sing 372 n n CZ3 CH2 TRP sing 373 n y CZ3 HZ3 TRP sing 374 n n CH2 HH2 TRP sing 375 n n OXT HXT TRP sing 376 n n # _atom_sites.entry_id 5V0I _atom_sites.fract_transf_matrix[1][1] 0.021393 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009025 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMP A 1 401 340 AMP AMP . D 3 TRP A 1 402 341 TRP TRP . E 4 FMT A 1 403 342 FMT FMT . F 4 FMT A 1 404 343 FMT FMT . G 2 AMP B 1 401 340 AMP AMP . H 3 TRP B 1 402 341 TRP TRP . I 4 FMT B 1 403 342 FMT FMT . J 4 FMT B 1 404 343 FMT FMT . K 5 HOH A 1 501 124 HOH HOH . K 5 HOH A 2 502 121 HOH HOH . K 5 HOH A 3 503 99 HOH HOH . K 5 HOH A 4 504 89 HOH HOH . K 5 HOH A 5 505 19 HOH HOH . K 5 HOH A 6 506 84 HOH HOH . K 5 HOH A 7 507 73 HOH HOH . K 5 HOH A 8 508 57 HOH HOH . K 5 HOH A 9 509 111 HOH HOH . K 5 HOH A 10 510 65 HOH HOH . K 5 HOH A 11 511 58 HOH HOH . K 5 HOH A 12 512 95 HOH HOH . K 5 HOH A 13 513 110 HOH HOH . K 5 HOH A 14 514 2 HOH HOH . K 5 HOH A 15 515 18 HOH HOH . K 5 HOH A 16 516 12 HOH HOH . K 5 HOH A 17 517 74 HOH HOH . K 5 HOH A 18 518 75 HOH HOH . K 5 HOH A 19 519 123 HOH HOH . K 5 HOH A 20 520 120 HOH HOH . K 5 HOH A 21 521 21 HOH HOH . K 5 HOH A 22 522 23 HOH HOH . K 5 HOH A 23 523 4 HOH HOH . K 5 HOH A 24 524 77 HOH HOH . K 5 HOH A 25 525 41 HOH HOH . K 5 HOH A 26 526 114 HOH HOH . K 5 HOH A 27 527 49 HOH HOH . K 5 HOH A 28 528 9 HOH HOH . K 5 HOH A 29 529 35 HOH HOH . K 5 HOH A 30 530 37 HOH HOH . K 5 HOH A 31 531 33 HOH HOH . K 5 HOH A 32 532 85 HOH HOH . K 5 HOH A 33 533 43 HOH HOH . K 5 HOH A 34 534 14 HOH HOH . K 5 HOH A 35 535 3 HOH HOH . K 5 HOH A 36 536 7 HOH HOH . K 5 HOH A 37 537 68 HOH HOH . K 5 HOH A 38 538 109 HOH HOH . K 5 HOH A 39 539 98 HOH HOH . K 5 HOH A 40 540 112 HOH HOH . K 5 HOH A 41 541 82 HOH HOH . K 5 HOH A 42 542 39 HOH HOH . K 5 HOH A 43 543 52 HOH HOH . K 5 HOH A 44 544 34 HOH HOH . K 5 HOH A 45 545 113 HOH HOH . K 5 HOH A 46 546 45 HOH HOH . K 5 HOH A 47 547 88 HOH HOH . K 5 HOH A 48 548 11 HOH HOH . K 5 HOH A 49 549 106 HOH HOH . K 5 HOH A 50 550 20 HOH HOH . K 5 HOH A 51 551 53 HOH HOH . K 5 HOH A 52 552 103 HOH HOH . K 5 HOH A 53 553 55 HOH HOH . K 5 HOH A 54 554 40 HOH HOH . K 5 HOH A 55 555 80 HOH HOH . K 5 HOH A 56 556 87 HOH HOH . K 5 HOH A 57 557 101 HOH HOH . K 5 HOH A 58 558 46 HOH HOH . K 5 HOH A 59 559 100 HOH HOH . K 5 HOH A 60 560 102 HOH HOH . K 5 HOH A 61 561 119 HOH HOH . K 5 HOH A 62 562 86 HOH HOH . K 5 HOH A 63 563 107 HOH HOH . K 5 HOH A 64 564 122 HOH HOH . K 5 HOH A 65 565 56 HOH HOH . K 5 HOH A 66 566 96 HOH HOH . K 5 HOH A 67 567 116 HOH HOH . K 5 HOH A 68 568 78 HOH HOH . L 5 HOH B 1 501 97 HOH HOH . L 5 HOH B 2 502 50 HOH HOH . L 5 HOH B 3 503 6 HOH HOH . L 5 HOH B 4 504 108 HOH HOH . L 5 HOH B 5 505 8 HOH HOH . L 5 HOH B 6 506 129 HOH HOH . L 5 HOH B 7 507 10 HOH HOH . L 5 HOH B 8 508 93 HOH HOH . L 5 HOH B 9 509 17 HOH HOH . L 5 HOH B 10 510 70 HOH HOH . L 5 HOH B 11 511 30 HOH HOH . L 5 HOH B 12 512 62 HOH HOH . L 5 HOH B 13 513 5 HOH HOH . L 5 HOH B 14 514 22 HOH HOH . L 5 HOH B 15 515 92 HOH HOH . L 5 HOH B 16 516 105 HOH HOH . L 5 HOH B 17 517 54 HOH HOH . L 5 HOH B 18 518 81 HOH HOH . L 5 HOH B 19 519 125 HOH HOH . L 5 HOH B 20 520 117 HOH HOH . L 5 HOH B 21 521 29 HOH HOH . L 5 HOH B 22 522 127 HOH HOH . L 5 HOH B 23 523 28 HOH HOH . L 5 HOH B 24 524 115 HOH HOH . L 5 HOH B 25 525 66 HOH HOH . L 5 HOH B 26 526 128 HOH HOH . L 5 HOH B 27 527 26 HOH HOH . L 5 HOH B 28 528 132 HOH HOH . L 5 HOH B 29 529 48 HOH HOH . L 5 HOH B 30 530 31 HOH HOH . L 5 HOH B 31 531 15 HOH HOH . L 5 HOH B 32 532 44 HOH HOH . L 5 HOH B 33 533 16 HOH HOH . L 5 HOH B 34 534 67 HOH HOH . L 5 HOH B 35 535 24 HOH HOH . L 5 HOH B 36 536 83 HOH HOH . L 5 HOH B 37 537 32 HOH HOH . L 5 HOH B 38 538 131 HOH HOH . L 5 HOH B 39 539 76 HOH HOH . L 5 HOH B 40 540 90 HOH HOH . L 5 HOH B 41 541 59 HOH HOH . L 5 HOH B 42 542 51 HOH HOH . L 5 HOH B 43 543 118 HOH HOH . L 5 HOH B 44 544 13 HOH HOH . L 5 HOH B 45 545 27 HOH HOH . L 5 HOH B 46 546 38 HOH HOH . L 5 HOH B 47 547 61 HOH HOH . L 5 HOH B 48 548 47 HOH HOH . L 5 HOH B 49 549 94 HOH HOH . L 5 HOH B 50 550 69 HOH HOH . L 5 HOH B 51 551 104 HOH HOH . L 5 HOH B 52 552 71 HOH HOH . L 5 HOH B 53 553 60 HOH HOH . L 5 HOH B 54 554 36 HOH HOH . L 5 HOH B 55 555 126 HOH HOH . L 5 HOH B 56 556 25 HOH HOH . L 5 HOH B 57 557 130 HOH HOH . L 5 HOH B 58 558 79 HOH HOH . L 5 HOH B 59 559 1 HOH HOH . L 5 HOH B 60 560 63 HOH HOH . L 5 HOH B 61 561 91 HOH HOH . L 5 HOH B 62 562 42 HOH HOH . L 5 HOH B 63 563 64 HOH HOH . L 5 HOH B 64 564 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . H 3 4.959 26.576 39.047 1 56.68 ? N TRP 402 B 1 HETATM 2 C CA TRP . . . H 3 4.301 27.844 39.336 1 54.22 ? CA TRP 402 B 1 HETATM 3 C C TRP . . . H 3 2.924 27.659 39.955 1 53.22 ? C TRP 402 B 1 HETATM 4 O O TRP . . . H 3 2.217 26.688 39.651 1 42.67 ? O TRP 402 B 1 HETATM 5 C CB TRP . . . H 3 4.172 28.677 38.066 1 49.55 ? CB TRP 402 B 1 HETATM 6 C CG TRP . . . H 3 5.485 29.054 37.476 1 53.95 ? CG TRP 402 B 1 HETATM 7 C CD1 TRP . . . H 3 5.963 28.693 36.256 1 56.29 ? CD1 TRP 402 B 1 HETATM 8 C CD2 TRP . . . H 3 6.501 29.865 38.088 1 57.14 ? CD2 TRP 402 B 1 HETATM 9 N NE1 TRP . . . H 3 7.228 29.239 36.057 1 60.74 ? NE1 TRP 402 B 1 HETATM 10 C CE2 TRP . . . H 3 7.572 29.964 37.167 1 62.09 ? CE2 TRP 402 B 1 HETATM 11 C CE3 TRP . . . H 3 6.605 30.528 39.318 1 57.39 ? CE3 TRP 402 B 1 HETATM 12 C CZ2 TRP . . . H 3 8.741 30.683 37.446 1 65.64 ? CZ2 TRP 402 B 1 HETATM 13 C CZ3 TRP . . . H 3 7.772 31.247 39.593 1 61.81 ? CZ3 TRP 402 B 1 HETATM 14 C CH2 TRP . . . H 3 8.818 31.319 38.656 1 65.81 ? CH2 TRP 402 B 1 HETATM 15 O OXT TRP . . . H 3 2.498 28.507 40.746 1 50.43 ? OXT TRP 402 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #