data_5V0R # _model_server_result.job_id IoL-QXMGoqutPpfT04PU5A _model_server_result.datetime_utc '2025-03-12 19:59:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v0r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5V0R # _exptl.entry_id 5V0R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V0R _cell.length_a 52.36 _cell.length_b 85.24 _cell.length_c 33.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V0R _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 106 A ILE 98 1_555 A N CSA 107 A CSA 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C CSA 107 A CSA 99 1_555 A N LEU 108 A LEU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 B MG MG . A MG 201 1_555 D O HOH . A HOH 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc2 B MG MG . A MG 201 1_555 D O HOH . A HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc3 B MG MG . A MG 201 1_555 D O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 B MG MG . A MG 201 1_555 D O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 B MG MG . A MG 201 1_555 D O HOH . A HOH 490 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc6 B MG MG . A MG 201 1_555 D O HOH . A HOH 482 4_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5V0R _atom_sites.fract_transf_matrix[1][1] 0.019099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011732 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029542 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 201 MG MG . C 3 CL A 1 202 202 CL CL . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 303 HOH HOH . D 4 HOH A 3 303 304 HOH HOH . D 4 HOH A 4 304 305 HOH HOH . D 4 HOH A 5 305 308 HOH HOH . D 4 HOH A 6 306 309 HOH HOH . D 4 HOH A 7 307 307 HOH HOH . D 4 HOH A 8 308 311 HOH HOH . D 4 HOH A 9 309 310 HOH HOH . D 4 HOH A 10 310 313 HOH HOH . D 4 HOH A 11 311 314 HOH HOH . D 4 HOH A 12 312 315 HOH HOH . D 4 HOH A 13 313 335 HOH HOH . D 4 HOH A 14 314 317 HOH HOH . D 4 HOH A 15 315 320 HOH HOH . D 4 HOH A 16 316 312 HOH HOH . D 4 HOH A 17 317 321 HOH HOH . D 4 HOH A 18 318 328 HOH HOH . D 4 HOH A 19 319 319 HOH HOH . D 4 HOH A 20 320 318 HOH HOH . D 4 HOH A 21 321 325 HOH HOH . D 4 HOH A 22 322 326 HOH HOH . D 4 HOH A 23 323 323 HOH HOH . D 4 HOH A 24 324 316 HOH HOH . D 4 HOH A 25 325 343 HOH HOH . D 4 HOH A 26 326 333 HOH HOH . D 4 HOH A 27 327 324 HOH HOH . D 4 HOH A 28 328 327 HOH HOH . D 4 HOH A 29 329 346 HOH HOH . D 4 HOH A 30 330 332 HOH HOH . D 4 HOH A 31 331 331 HOH HOH . D 4 HOH A 32 332 339 HOH HOH . D 4 HOH A 33 333 345 HOH HOH . D 4 HOH A 34 334 329 HOH HOH . D 4 HOH A 35 335 336 HOH HOH . D 4 HOH A 36 336 338 HOH HOH . D 4 HOH A 37 337 334 HOH HOH . D 4 HOH A 38 338 340 HOH HOH . D 4 HOH A 39 339 347 HOH HOH . D 4 HOH A 40 340 344 HOH HOH . D 4 HOH A 41 341 351 HOH HOH . D 4 HOH A 42 342 342 HOH HOH . D 4 HOH A 43 343 341 HOH HOH . D 4 HOH A 44 344 349 HOH HOH . D 4 HOH A 45 345 368 HOH HOH . D 4 HOH A 46 346 352 HOH HOH . D 4 HOH A 47 347 322 HOH HOH . D 4 HOH A 48 348 348 HOH HOH . D 4 HOH A 49 349 354 HOH HOH . D 4 HOH A 50 350 337 HOH HOH . D 4 HOH A 51 351 355 HOH HOH . D 4 HOH A 52 352 330 HOH HOH . D 4 HOH A 53 353 350 HOH HOH . D 4 HOH A 54 354 358 HOH HOH . D 4 HOH A 55 355 371 HOH HOH . D 4 HOH A 56 356 356 HOH HOH . D 4 HOH A 57 357 362 HOH HOH . D 4 HOH A 58 358 360 HOH HOH . D 4 HOH A 59 359 357 HOH HOH . D 4 HOH A 60 360 353 HOH HOH . D 4 HOH A 61 361 363 HOH HOH . D 4 HOH A 62 362 361 HOH HOH . D 4 HOH A 63 363 372 HOH HOH . D 4 HOH A 64 364 391 HOH HOH . D 4 HOH A 65 365 359 HOH HOH . D 4 HOH A 66 366 367 HOH HOH . D 4 HOH A 67 367 365 HOH HOH . D 4 HOH A 68 368 369 HOH HOH . D 4 HOH A 69 369 373 HOH HOH . D 4 HOH A 70 370 364 HOH HOH . D 4 HOH A 71 371 378 HOH HOH . D 4 HOH A 72 372 375 HOH HOH . D 4 HOH A 73 373 388 HOH HOH . D 4 HOH A 74 374 370 HOH HOH . D 4 HOH A 75 375 386 HOH HOH . D 4 HOH A 76 376 382 HOH HOH . D 4 HOH A 77 377 366 HOH HOH . D 4 HOH A 78 378 374 HOH HOH . D 4 HOH A 79 379 381 HOH HOH . D 4 HOH A 80 380 377 HOH HOH . D 4 HOH A 81 381 387 HOH HOH . D 4 HOH A 82 382 380 HOH HOH . D 4 HOH A 83 383 379 HOH HOH . D 4 HOH A 84 384 384 HOH HOH . D 4 HOH A 85 385 385 HOH HOH . D 4 HOH A 86 386 383 HOH HOH . D 4 HOH A 87 387 390 HOH HOH . D 4 HOH A 88 388 376 HOH HOH . D 4 HOH A 89 389 389 HOH HOH . D 4 HOH A 90 390 392 HOH HOH . D 4 HOH A 91 391 394 HOH HOH . D 4 HOH A 92 392 409 HOH HOH . D 4 HOH A 93 393 393 HOH HOH . D 4 HOH A 94 394 397 HOH HOH . D 4 HOH A 95 395 395 HOH HOH . D 4 HOH A 96 396 396 HOH HOH . D 4 HOH A 97 397 398 HOH HOH . D 4 HOH A 98 398 400 HOH HOH . D 4 HOH A 99 399 399 HOH HOH . D 4 HOH A 100 400 402 HOH HOH . D 4 HOH A 101 401 403 HOH HOH . D 4 HOH A 102 402 405 HOH HOH . D 4 HOH A 103 403 406 HOH HOH . D 4 HOH A 104 404 408 HOH HOH . D 4 HOH A 105 405 401 HOH HOH . D 4 HOH A 106 406 413 HOH HOH . D 4 HOH A 107 407 412 HOH HOH . D 4 HOH A 108 408 410 HOH HOH . D 4 HOH A 109 409 416 HOH HOH . D 4 HOH A 110 410 411 HOH HOH . D 4 HOH A 111 411 407 HOH HOH . D 4 HOH A 112 412 417 HOH HOH . D 4 HOH A 113 413 414 HOH HOH . D 4 HOH A 114 414 404 HOH HOH . D 4 HOH A 115 415 415 HOH HOH . D 4 HOH A 116 416 419 HOH HOH . D 4 HOH A 117 417 421 HOH HOH . D 4 HOH A 118 418 418 HOH HOH . D 4 HOH A 119 419 425 HOH HOH . D 4 HOH A 120 420 420 HOH HOH . D 4 HOH A 121 421 422 HOH HOH . D 4 HOH A 122 422 430 HOH HOH . D 4 HOH A 123 423 306 HOH HOH . D 4 HOH A 124 424 424 HOH HOH . D 4 HOH A 125 425 427 HOH HOH . D 4 HOH A 126 426 426 HOH HOH . D 4 HOH A 127 427 429 HOH HOH . D 4 HOH A 128 428 431 HOH HOH . D 4 HOH A 129 429 436 HOH HOH . D 4 HOH A 130 430 439 HOH HOH . D 4 HOH A 131 431 428 HOH HOH . D 4 HOH A 132 432 447 HOH HOH . D 4 HOH A 133 433 435 HOH HOH . D 4 HOH A 134 434 441 HOH HOH . D 4 HOH A 135 435 432 HOH HOH . D 4 HOH A 136 436 442 HOH HOH . D 4 HOH A 137 437 423 HOH HOH . D 4 HOH A 138 438 434 HOH HOH . D 4 HOH A 139 439 433 HOH HOH . D 4 HOH A 140 440 440 HOH HOH . D 4 HOH A 141 441 437 HOH HOH . D 4 HOH A 142 442 438 HOH HOH . D 4 HOH A 143 443 444 HOH HOH . D 4 HOH A 144 444 443 HOH HOH . D 4 HOH A 145 445 446 HOH HOH . D 4 HOH A 146 446 448 HOH HOH . D 4 HOH A 147 447 445 HOH HOH . D 4 HOH A 148 448 449 HOH HOH . D 4 HOH A 149 449 453 HOH HOH . D 4 HOH A 150 450 450 HOH HOH . D 4 HOH A 151 451 451 HOH HOH . D 4 HOH A 152 452 452 HOH HOH . D 4 HOH A 153 453 454 HOH HOH . D 4 HOH A 154 454 456 HOH HOH . D 4 HOH A 155 455 455 HOH HOH . D 4 HOH A 156 456 458 HOH HOH . D 4 HOH A 157 457 457 HOH HOH . D 4 HOH A 158 458 459 HOH HOH . D 4 HOH A 159 459 461 HOH HOH . D 4 HOH A 160 460 460 HOH HOH . D 4 HOH A 161 461 462 HOH HOH . D 4 HOH A 162 462 464 HOH HOH . D 4 HOH A 163 463 463 HOH HOH . D 4 HOH A 164 464 465 HOH HOH . D 4 HOH A 165 465 466 HOH HOH . D 4 HOH A 166 466 470 HOH HOH . D 4 HOH A 167 467 473 HOH HOH . D 4 HOH A 168 468 467 HOH HOH . D 4 HOH A 169 469 475 HOH HOH . D 4 HOH A 170 470 469 HOH HOH . D 4 HOH A 171 471 471 HOH HOH . D 4 HOH A 172 472 468 HOH HOH . D 4 HOH A 173 473 472 HOH HOH . D 4 HOH A 174 474 479 HOH HOH . D 4 HOH A 175 475 476 HOH HOH . D 4 HOH A 176 476 474 HOH HOH . D 4 HOH A 177 477 477 HOH HOH . D 4 HOH A 178 478 478 HOH HOH . D 4 HOH A 179 479 480 HOH HOH . D 4 HOH A 180 480 481 HOH HOH . D 4 HOH A 181 481 482 HOH HOH . D 4 HOH A 182 482 483 HOH HOH . D 4 HOH A 183 483 484 HOH HOH . D 4 HOH A 184 484 485 HOH HOH . D 4 HOH A 185 485 486 HOH HOH . D 4 HOH A 186 486 487 HOH HOH . D 4 HOH A 187 487 488 HOH HOH . D 4 HOH A 188 488 302 HOH HOH . D 4 HOH A 189 489 491 HOH HOH . D 4 HOH A 190 490 489 HOH HOH . D 4 HOH A 191 491 490 HOH HOH . D 4 HOH A 192 492 492 HOH HOH . D 4 HOH A 193 493 494 HOH HOH . D 4 HOH A 194 494 493 HOH HOH . D 4 HOH A 195 495 496 HOH HOH . D 4 HOH A 196 496 495 HOH HOH . D 4 HOH A 197 497 497 HOH HOH . D 4 HOH A 198 498 499 HOH HOH . D 4 HOH A 199 499 503 HOH HOH . D 4 HOH A 200 500 500 HOH HOH . D 4 HOH A 201 501 498 HOH HOH . D 4 HOH A 202 502 504 HOH HOH . D 4 HOH A 203 503 501 HOH HOH . D 4 HOH A 204 504 502 HOH HOH . D 4 HOH A 205 505 506 HOH HOH . D 4 HOH A 206 506 508 HOH HOH . D 4 HOH A 207 507 507 HOH HOH . D 4 HOH A 208 508 505 HOH HOH . D 4 HOH A 209 509 510 HOH HOH . D 4 HOH A 210 510 512 HOH HOH . D 4 HOH A 211 511 511 HOH HOH . D 4 HOH A 212 512 513 HOH HOH . D 4 HOH A 213 513 509 HOH HOH . D 4 HOH A 214 514 515 HOH HOH . D 4 HOH A 215 515 514 HOH HOH . D 4 HOH A 216 516 517 HOH HOH . D 4 HOH A 217 517 516 HOH HOH . D 4 HOH A 218 518 518 HOH HOH . D 4 HOH A 219 519 519 HOH HOH . D 4 HOH A 220 520 523 HOH HOH . D 4 HOH A 221 521 520 HOH HOH . D 4 HOH A 222 522 522 HOH HOH . D 4 HOH A 223 523 525 HOH HOH . D 4 HOH A 224 524 524 HOH HOH . D 4 HOH A 225 525 526 HOH HOH . D 4 HOH A 226 526 527 HOH HOH . D 4 HOH A 227 527 528 HOH HOH . D 4 HOH A 228 528 530 HOH HOH . D 4 HOH A 229 529 533 HOH HOH . D 4 HOH A 230 530 521 HOH HOH . D 4 HOH A 231 531 529 HOH HOH . D 4 HOH A 232 532 531 HOH HOH . D 4 HOH A 233 533 535 HOH HOH . D 4 HOH A 234 534 532 HOH HOH . D 4 HOH A 235 535 536 HOH HOH . D 4 HOH A 236 536 537 HOH HOH . D 4 HOH A 237 537 534 HOH HOH . D 4 HOH A 238 538 538 HOH HOH . D 4 HOH A 239 539 539 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 3.769 _atom_site.Cartn_y -9.103 _atom_site.Cartn_z -21.551 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #