data_5V0V # _model_server_result.job_id 2MZOV4zslxdt3dtEWGJrcw _model_server_result.datetime_utc '2024-11-18 15:46:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5V0V # _exptl.entry_id 5V0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5V0V _cell.length_a 94.209 _cell.length_b 94.209 _cell.length_c 141.819 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 123 A CYS 123 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 A SG CYS 167 A CYS 167 1_555 A SG CYS 176 A CYS 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 A SG CYS 199 A CYS 199 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 A SG CYS 244 A CYS 244 1_555 A SG CYS 252 A CYS 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf8 A SG CYS 264 A CYS 264 1_555 A SG CYS 278 A CYS 278 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 A SG CYS 277 A CYS 277 1_555 A SG CYS 288 A CYS 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf10 A SG CYS 315 A CYS 315 1_555 A SG CYS 360 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf11 A SG CYS 359 A CYS 359 1_555 A SG CYS 368 A CYS 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf12 A SG CYS 391 A CYS 391 1_555 A SG CYS 437 A CYS 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf13 A SG CYS 436 A CYS 436 1_555 A SG CYS 447 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf14 A SG CYS 460 A CYS 460 1_555 A SG CYS 476 A CYS 476 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf15 A SG CYS 475 A CYS 475 1_555 A SG CYS 486 A CYS 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf16 A SG CYS 513 A CYS 513 1_555 A SG CYS 558 A CYS 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf17 A SG CYS 557 A CYS 557 1_555 A SG CYS 566 A CYS 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 407 n n C C2 TRS sing 408 n n C C3 TRS sing 409 n n C N TRS sing 410 n n C1 O1 TRS sing 411 n n C1 H11 TRS sing 412 n n C1 H12 TRS sing 413 n n C2 O2 TRS sing 414 n n C2 H21 TRS sing 415 n n C2 H22 TRS sing 416 n n C3 O3 TRS sing 417 n n C3 H31 TRS sing 418 n n C3 H32 TRS sing 419 n n N HN1 TRS sing 420 n n N HN2 TRS sing 421 n n N HN3 TRS sing 422 n n O1 HO1 TRS sing 423 n n O2 HO2 TRS sing 424 n n O3 HO3 TRS sing 425 n n # _atom_sites.entry_id 5V0V _atom_sites.fract_transf_matrix[1][1] 0.010615 _atom_sites.fract_transf_matrix[1][2] 0.006128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TRS A 1 601 1 TRS TRS . C 2 TRS A 1 602 3 TRS TRS . D 2 TRS A 1 603 4 TRS TRS . E 2 TRS A 1 604 6 TRS TRS . F 3 SO4 A 1 605 1 SO4 SO4 . G 3 SO4 A 1 606 2 SO4 SO4 . H 3 SO4 A 1 607 3 SO4 SO4 . I 3 SO4 A 1 608 4 SO4 SO4 . J 3 SO4 A 1 609 6 SO4 SO4 . K 3 SO4 A 1 610 8 SO4 SO4 . L 3 SO4 A 1 611 9 SO4 SO4 . M 4 8QP A 1 612 1 8QP ETS . N 4 8QP A 1 613 2 8QP ETS . O 5 8QS A 1 614 1 8QS ETD . P 5 8QS A 1 615 3 8QS ETD . Q 6 HOH A 1 701 296 HOH HOH . Q 6 HOH A 2 702 181 HOH HOH . Q 6 HOH A 3 703 39 HOH HOH . Q 6 HOH A 4 704 110 HOH HOH . Q 6 HOH A 5 705 272 HOH HOH . Q 6 HOH A 6 706 206 HOH HOH . Q 6 HOH A 7 707 21 HOH HOH . Q 6 HOH A 8 708 255 HOH HOH . Q 6 HOH A 9 709 61 HOH HOH . Q 6 HOH A 10 710 123 HOH HOH . Q 6 HOH A 11 711 106 HOH HOH . Q 6 HOH A 12 712 115 HOH HOH . Q 6 HOH A 13 713 15 HOH HOH . Q 6 HOH A 14 714 263 HOH HOH . Q 6 HOH A 15 715 234 HOH HOH . Q 6 HOH A 16 716 270 HOH HOH . Q 6 HOH A 17 717 165 HOH HOH . Q 6 HOH A 18 718 89 HOH HOH . Q 6 HOH A 19 719 46 HOH HOH . Q 6 HOH A 20 720 246 HOH HOH . Q 6 HOH A 21 721 218 HOH HOH . Q 6 HOH A 22 722 149 HOH HOH . Q 6 HOH A 23 723 96 HOH HOH . Q 6 HOH A 24 724 201 HOH HOH . Q 6 HOH A 25 725 276 HOH HOH . Q 6 HOH A 26 726 214 HOH HOH . Q 6 HOH A 27 727 14 HOH HOH . Q 6 HOH A 28 728 183 HOH HOH . Q 6 HOH A 29 729 94 HOH HOH . Q 6 HOH A 30 730 294 HOH HOH . Q 6 HOH A 31 731 293 HOH HOH . Q 6 HOH A 32 732 132 HOH HOH . Q 6 HOH A 33 733 17 HOH HOH . Q 6 HOH A 34 734 159 HOH HOH . Q 6 HOH A 35 735 157 HOH HOH . Q 6 HOH A 36 736 98 HOH HOH . Q 6 HOH A 37 737 161 HOH HOH . Q 6 HOH A 38 738 109 HOH HOH . Q 6 HOH A 39 739 101 HOH HOH . Q 6 HOH A 40 740 16 HOH HOH . Q 6 HOH A 41 741 213 HOH HOH . Q 6 HOH A 42 742 271 HOH HOH . Q 6 HOH A 43 743 35 HOH HOH . Q 6 HOH A 44 744 141 HOH HOH . Q 6 HOH A 45 745 284 HOH HOH . Q 6 HOH A 46 746 277 HOH HOH . Q 6 HOH A 47 747 97 HOH HOH . Q 6 HOH A 48 748 260 HOH HOH . Q 6 HOH A 49 749 23 HOH HOH . Q 6 HOH A 50 750 186 HOH HOH . Q 6 HOH A 51 751 135 HOH HOH . Q 6 HOH A 52 752 74 HOH HOH . Q 6 HOH A 53 753 76 HOH HOH . Q 6 HOH A 54 754 169 HOH HOH . Q 6 HOH A 55 755 78 HOH HOH . Q 6 HOH A 56 756 163 HOH HOH . Q 6 HOH A 57 757 208 HOH HOH . Q 6 HOH A 58 758 125 HOH HOH . Q 6 HOH A 59 759 256 HOH HOH . Q 6 HOH A 60 760 281 HOH HOH . Q 6 HOH A 61 761 138 HOH HOH . Q 6 HOH A 62 762 53 HOH HOH . Q 6 HOH A 63 763 113 HOH HOH . Q 6 HOH A 64 764 38 HOH HOH . Q 6 HOH A 65 765 221 HOH HOH . Q 6 HOH A 66 766 152 HOH HOH . Q 6 HOH A 67 767 225 HOH HOH . Q 6 HOH A 68 768 182 HOH HOH . Q 6 HOH A 69 769 238 HOH HOH . Q 6 HOH A 70 770 63 HOH HOH . Q 6 HOH A 71 771 10 HOH HOH . Q 6 HOH A 72 772 45 HOH HOH . Q 6 HOH A 73 773 168 HOH HOH . Q 6 HOH A 74 774 100 HOH HOH . Q 6 HOH A 75 775 178 HOH HOH . Q 6 HOH A 76 776 144 HOH HOH . Q 6 HOH A 77 777 280 HOH HOH . Q 6 HOH A 78 778 133 HOH HOH . Q 6 HOH A 79 779 237 HOH HOH . Q 6 HOH A 80 780 79 HOH HOH . Q 6 HOH A 81 781 162 HOH HOH . Q 6 HOH A 82 782 233 HOH HOH . Q 6 HOH A 83 783 262 HOH HOH . Q 6 HOH A 84 784 91 HOH HOH . Q 6 HOH A 85 785 275 HOH HOH . Q 6 HOH A 86 786 241 HOH HOH . Q 6 HOH A 87 787 75 HOH HOH . Q 6 HOH A 88 788 257 HOH HOH . Q 6 HOH A 89 789 29 HOH HOH . Q 6 HOH A 90 790 32 HOH HOH . Q 6 HOH A 91 791 164 HOH HOH . Q 6 HOH A 92 792 200 HOH HOH . Q 6 HOH A 93 793 188 HOH HOH . Q 6 HOH A 94 794 18 HOH HOH . Q 6 HOH A 95 795 28 HOH HOH . Q 6 HOH A 96 796 90 HOH HOH . Q 6 HOH A 97 797 288 HOH HOH . Q 6 HOH A 98 798 31 HOH HOH . Q 6 HOH A 99 799 5 HOH HOH . Q 6 HOH A 100 800 116 HOH HOH . Q 6 HOH A 101 801 279 HOH HOH . Q 6 HOH A 102 802 285 HOH HOH . Q 6 HOH A 103 803 107 HOH HOH . Q 6 HOH A 104 804 259 HOH HOH . Q 6 HOH A 105 805 247 HOH HOH . Q 6 HOH A 106 806 291 HOH HOH . Q 6 HOH A 107 807 216 HOH HOH . Q 6 HOH A 108 808 119 HOH HOH . Q 6 HOH A 109 809 9 HOH HOH . Q 6 HOH A 110 810 7 HOH HOH . Q 6 HOH A 111 811 43 HOH HOH . Q 6 HOH A 112 812 112 HOH HOH . Q 6 HOH A 113 813 88 HOH HOH . Q 6 HOH A 114 814 274 HOH HOH . Q 6 HOH A 115 815 64 HOH HOH . Q 6 HOH A 116 816 121 HOH HOH . Q 6 HOH A 117 817 273 HOH HOH . Q 6 HOH A 118 818 93 HOH HOH . Q 6 HOH A 119 819 58 HOH HOH . Q 6 HOH A 120 820 111 HOH HOH . Q 6 HOH A 121 821 34 HOH HOH . Q 6 HOH A 122 822 295 HOH HOH . Q 6 HOH A 123 823 139 HOH HOH . Q 6 HOH A 124 824 176 HOH HOH . Q 6 HOH A 125 825 166 HOH HOH . Q 6 HOH A 126 826 283 HOH HOH . Q 6 HOH A 127 827 205 HOH HOH . Q 6 HOH A 128 828 258 HOH HOH . Q 6 HOH A 129 829 239 HOH HOH . Q 6 HOH A 130 830 292 HOH HOH . Q 6 HOH A 131 831 250 HOH HOH . Q 6 HOH A 132 832 248 HOH HOH . Q 6 HOH A 133 833 254 HOH HOH . Q 6 HOH A 134 834 219 HOH HOH . Q 6 HOH A 135 835 202 HOH HOH . Q 6 HOH A 136 836 99 HOH HOH . Q 6 HOH A 137 837 289 HOH HOH . Q 6 HOH A 138 838 126 HOH HOH . Q 6 HOH A 139 839 67 HOH HOH . Q 6 HOH A 140 840 118 HOH HOH . Q 6 HOH A 141 841 151 HOH HOH . Q 6 HOH A 142 842 127 HOH HOH . Q 6 HOH A 143 843 282 HOH HOH . Q 6 HOH A 144 844 278 HOH HOH . Q 6 HOH A 145 845 290 HOH HOH . Q 6 HOH A 146 846 244 HOH HOH . Q 6 HOH A 147 847 269 HOH HOH . Q 6 HOH A 148 848 158 HOH HOH . Q 6 HOH A 149 849 198 HOH HOH . Q 6 HOH A 150 850 86 HOH HOH . Q 6 HOH A 151 851 175 HOH HOH . Q 6 HOH A 152 852 194 HOH HOH . Q 6 HOH A 153 853 136 HOH HOH . Q 6 HOH A 154 854 266 HOH HOH . Q 6 HOH A 155 855 286 HOH HOH . Q 6 HOH A 156 856 287 HOH HOH . Q 6 HOH A 157 857 190 HOH HOH . Q 6 HOH A 158 858 265 HOH HOH . Q 6 HOH A 159 859 268 HOH HOH . Q 6 HOH A 160 860 193 HOH HOH . Q 6 HOH A 161 861 173 HOH HOH . Q 6 HOH A 162 862 150 HOH HOH . Q 6 HOH A 163 863 267 HOH HOH . Q 6 HOH A 164 864 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . C 2 38.821 54.885 36.761 1 70.29 ? C TRS 602 A 1 HETATM 2 C C1 TRS . . . C 2 39.44 56.286 36.651 1 76.32 ? C1 TRS 602 A 1 HETATM 3 C C2 TRS . . . C 2 37.391 54.97 37.318 1 69.13 ? C2 TRS 602 A 1 HETATM 4 C C3 TRS . . . C 2 39.681 53.951 37.62 1 61.23 ? C3 TRS 602 A 1 HETATM 5 N N TRS . . . C 2 38.727 54.286 35.395 1 74.98 ? N TRS 602 A 1 HETATM 6 O O1 TRS . . . C 2 39.997 56.723 37.899 1 76.49 ? O1 TRS 602 A 1 HETATM 7 O O2 TRS . . . C 2 36.486 54.093 36.632 1 80.18 ? O2 TRS 602 A 1 HETATM 8 O O3 TRS . . . C 2 41.052 53.781 37.216 1 68.91 ? O3 TRS 602 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #