data_5V1M # _model_server_result.job_id BNM8gvjWoL1miLBEOqa-Gw _model_server_result.datetime_utc '2024-12-01 17:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":307}' # _entry.id 5V1M # _exptl.entry_id 5V1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.04 _cell.angle_gamma 90 _cell.entry_id 5V1M _cell.length_a 42.512 _cell.length_b 53.219 _cell.length_c 46.638 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5V1M _atom_sites.fract_transf_matrix[1][1] 0.023523 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007211 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022427 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 301 1 CL CL . C 3 GOL A 1 302 1 GOL GOL . D 3 GOL A 1 303 3 GOL GOL . E 3 GOL A 1 304 4 GOL GOL . F 3 GOL A 1 305 5 GOL GOL . G 3 GOL A 1 306 7 GOL GOL . H 3 GOL A 1 307 8 GOL GOL . I 4 U5P A 1 308 1 U5P U5P . J 5 HOH A 1 401 240 HOH HOH . J 5 HOH A 2 402 156 HOH HOH . J 5 HOH A 3 403 277 HOH HOH . J 5 HOH A 4 404 63 HOH HOH . J 5 HOH A 5 405 263 HOH HOH . J 5 HOH A 6 406 275 HOH HOH . J 5 HOH A 7 407 97 HOH HOH . J 5 HOH A 8 408 123 HOH HOH . J 5 HOH A 9 409 298 HOH HOH . J 5 HOH A 10 410 238 HOH HOH . J 5 HOH A 11 411 130 HOH HOH . J 5 HOH A 12 412 11 HOH HOH . J 5 HOH A 13 413 68 HOH HOH . J 5 HOH A 14 414 168 HOH HOH . J 5 HOH A 15 415 120 HOH HOH . J 5 HOH A 16 416 247 HOH HOH . J 5 HOH A 17 417 291 HOH HOH . J 5 HOH A 18 418 69 HOH HOH . J 5 HOH A 19 419 221 HOH HOH . J 5 HOH A 20 420 248 HOH HOH . J 5 HOH A 21 421 109 HOH HOH . J 5 HOH A 22 422 21 HOH HOH . J 5 HOH A 23 423 170 HOH HOH . J 5 HOH A 24 424 98 HOH HOH . J 5 HOH A 25 425 265 HOH HOH . J 5 HOH A 26 426 155 HOH HOH . J 5 HOH A 27 427 103 HOH HOH . J 5 HOH A 28 428 175 HOH HOH . J 5 HOH A 29 429 299 HOH HOH . J 5 HOH A 30 430 92 HOH HOH . J 5 HOH A 31 431 80 HOH HOH . J 5 HOH A 32 432 111 HOH HOH . J 5 HOH A 33 433 115 HOH HOH . J 5 HOH A 34 434 254 HOH HOH . J 5 HOH A 35 435 8 HOH HOH . J 5 HOH A 36 436 301 HOH HOH . J 5 HOH A 37 437 220 HOH HOH . J 5 HOH A 38 438 87 HOH HOH . J 5 HOH A 39 439 86 HOH HOH . J 5 HOH A 40 440 283 HOH HOH . J 5 HOH A 41 441 116 HOH HOH . J 5 HOH A 42 442 18 HOH HOH . J 5 HOH A 43 443 13 HOH HOH . J 5 HOH A 44 444 236 HOH HOH . J 5 HOH A 45 445 106 HOH HOH . J 5 HOH A 46 446 292 HOH HOH . J 5 HOH A 47 447 269 HOH HOH . J 5 HOH A 48 448 15 HOH HOH . J 5 HOH A 49 449 90 HOH HOH . J 5 HOH A 50 450 70 HOH HOH . J 5 HOH A 51 451 4 HOH HOH . J 5 HOH A 52 452 125 HOH HOH . J 5 HOH A 53 453 10 HOH HOH . J 5 HOH A 54 454 33 HOH HOH . J 5 HOH A 55 455 287 HOH HOH . J 5 HOH A 56 456 47 HOH HOH . J 5 HOH A 57 457 297 HOH HOH . J 5 HOH A 58 458 162 HOH HOH . J 5 HOH A 59 459 124 HOH HOH . J 5 HOH A 60 460 5 HOH HOH . J 5 HOH A 61 461 100 HOH HOH . J 5 HOH A 62 462 294 HOH HOH . J 5 HOH A 63 463 49 HOH HOH . J 5 HOH A 64 464 6 HOH HOH . J 5 HOH A 65 465 64 HOH HOH . J 5 HOH A 66 466 210 HOH HOH . J 5 HOH A 67 467 9 HOH HOH . J 5 HOH A 68 468 258 HOH HOH . J 5 HOH A 69 469 239 HOH HOH . J 5 HOH A 70 470 54 HOH HOH . J 5 HOH A 71 471 57 HOH HOH . J 5 HOH A 72 472 36 HOH HOH . J 5 HOH A 73 473 34 HOH HOH . J 5 HOH A 74 474 136 HOH HOH . J 5 HOH A 75 475 53 HOH HOH . J 5 HOH A 76 476 151 HOH HOH . J 5 HOH A 77 477 60 HOH HOH . J 5 HOH A 78 478 78 HOH HOH . J 5 HOH A 79 479 35 HOH HOH . J 5 HOH A 80 480 32 HOH HOH . J 5 HOH A 81 481 129 HOH HOH . J 5 HOH A 82 482 72 HOH HOH . J 5 HOH A 83 483 62 HOH HOH . J 5 HOH A 84 484 88 HOH HOH . J 5 HOH A 85 485 66 HOH HOH . J 5 HOH A 86 486 82 HOH HOH . J 5 HOH A 87 487 44 HOH HOH . J 5 HOH A 88 488 276 HOH HOH . J 5 HOH A 89 489 171 HOH HOH . J 5 HOH A 90 490 56 HOH HOH . J 5 HOH A 91 491 30 HOH HOH . J 5 HOH A 92 492 14 HOH HOH . J 5 HOH A 93 493 250 HOH HOH . J 5 HOH A 94 494 244 HOH HOH . J 5 HOH A 95 495 110 HOH HOH . J 5 HOH A 96 496 295 HOH HOH . J 5 HOH A 97 497 161 HOH HOH . J 5 HOH A 98 498 38 HOH HOH . J 5 HOH A 99 499 302 HOH HOH . J 5 HOH A 100 500 81 HOH HOH . J 5 HOH A 101 501 160 HOH HOH . J 5 HOH A 102 502 288 HOH HOH . J 5 HOH A 103 503 131 HOH HOH . J 5 HOH A 104 504 256 HOH HOH . J 5 HOH A 105 505 146 HOH HOH . J 5 HOH A 106 506 158 HOH HOH . J 5 HOH A 107 507 284 HOH HOH . J 5 HOH A 108 508 79 HOH HOH . J 5 HOH A 109 509 253 HOH HOH . J 5 HOH A 110 510 52 HOH HOH . J 5 HOH A 111 511 260 HOH HOH . J 5 HOH A 112 512 274 HOH HOH . J 5 HOH A 113 513 303 HOH HOH . J 5 HOH A 114 514 165 HOH HOH . J 5 HOH A 115 515 22 HOH HOH . J 5 HOH A 116 516 252 HOH HOH . J 5 HOH A 117 517 282 HOH HOH . J 5 HOH A 118 518 122 HOH HOH . J 5 HOH A 119 519 50 HOH HOH . J 5 HOH A 120 520 93 HOH HOH . J 5 HOH A 121 521 237 HOH HOH . J 5 HOH A 122 522 285 HOH HOH . J 5 HOH A 123 523 296 HOH HOH . J 5 HOH A 124 524 191 HOH HOH . J 5 HOH A 125 525 83 HOH HOH . J 5 HOH A 126 526 112 HOH HOH . J 5 HOH A 127 527 145 HOH HOH . J 5 HOH A 128 528 150 HOH HOH . J 5 HOH A 129 529 300 HOH HOH . J 5 HOH A 130 530 242 HOH HOH . J 5 HOH A 131 531 272 HOH HOH . J 5 HOH A 132 532 232 HOH HOH . J 5 HOH A 133 533 193 HOH HOH . J 5 HOH A 134 534 172 HOH HOH . J 5 HOH A 135 535 159 HOH HOH . J 5 HOH A 136 536 264 HOH HOH . J 5 HOH A 137 537 147 HOH HOH . J 5 HOH A 138 538 249 HOH HOH . J 5 HOH A 139 539 211 HOH HOH . J 5 HOH A 140 540 197 HOH HOH . J 5 HOH A 141 541 1 HOH HOH . J 5 HOH A 142 542 219 HOH HOH . J 5 HOH A 143 543 279 HOH HOH . J 5 HOH A 144 544 266 HOH HOH . J 5 HOH A 145 545 141 HOH HOH . J 5 HOH A 146 546 243 HOH HOH . J 5 HOH A 147 547 126 HOH HOH . J 5 HOH A 148 548 117 HOH HOH . J 5 HOH A 149 549 290 HOH HOH . J 5 HOH A 150 550 75 HOH HOH . J 5 HOH A 151 551 289 HOH HOH . J 5 HOH A 152 552 67 HOH HOH . J 5 HOH A 153 553 233 HOH HOH . J 5 HOH A 154 554 118 HOH HOH . J 5 HOH A 155 555 142 HOH HOH . J 5 HOH A 156 556 190 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 3 -23.531 15.835 62.163 1 43.16 ? C1 GOL 307 A 1 HETATM 2 O O1 GOL . . . H 3 -22.962 14.861 61.341 1 40.95 ? O1 GOL 307 A 1 HETATM 3 C C2 GOL . . . H 3 -22.923 15.686 63.553 1 44.43 ? C2 GOL 307 A 1 HETATM 4 O O2 GOL . . . H 3 -23.479 16.665 64.392 1 45.29 ? O2 GOL 307 A 1 HETATM 5 C C3 GOL . . . H 3 -21.419 15.86 63.463 1 47.01 ? C3 GOL 307 A 1 HETATM 6 O O3 GOL . . . H 3 -20.877 15.921 64.761 1 50.06 ? O3 GOL 307 A 1 HETATM 7 H H11 GOL . . . H 3 -23.322 16.828 61.767 1 51.79 ? H11 GOL 307 A 1 HETATM 8 H H12 GOL . . . H 3 -24.612 15.701 62.21 1 51.79 ? H12 GOL 307 A 1 HETATM 9 H HO1 GOL . . . H 3 -23.384 14.892 60.457 1 49.14 ? HO1 GOL 307 A 1 HETATM 10 H H2 GOL . . . H 3 -23.146 14.69 63.936 1 53.32 ? H2 GOL 307 A 1 HETATM 11 H HO2 GOL . . . H 3 -23.085 16.592 65.286 1 54.35 ? HO2 GOL 307 A 1 HETATM 12 H H31 GOL . . . H 3 -20.982 15.022 62.919 1 56.41 ? H31 GOL 307 A 1 HETATM 13 H H32 GOL . . . H 3 -21.185 16.777 62.922 1 56.41 ? H32 GOL 307 A 1 HETATM 14 H HO3 GOL . . . H 3 -19.91 16.066 64.704 1 60.07 ? HO3 GOL 307 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #