data_5V23
#
_model_server_result.job_id            vS9jLGxrnLyKfOqjVMQOoA 
_model_server_result.datetime_utc      '2024-11-04 22:55:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v23 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    5V23 
#
_exptl.entry_id    5V23 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V23 
_cell.length_a            21.794 
_cell.length_b            39.343 
_cell.length_c            109.61 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V23 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 75 A CYS 99 1_555 A SG CYS 94 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
covale ? covale1 A C HIS 3 A HIS 27 1_555 A N MSE 4 A MSE 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C MSE 4 A MSE 28 1_555 A N ARG 5 A ARG 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 A C THR 22 A THR 46 1_555 A N MSE 23 A MSE 47 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C THR 22 A THR 46 1_555 A N MSE 23 A MSE 47 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 A C MSE 23 A MSE 47 1_555 A N GLU 24 A GLU 48 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale6 A C MSE 23 A MSE 47 1_555 A N GLU 24 A GLU 48 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.337 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5V23 
_atom_sites.fract_transf_matrix[1][1]    0.045884 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025417 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009123 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 201 1 GOL GOL . 
C 2 GOL A 1 202 2 GOL GOL . 
D 2 GOL A 1 203 3 GOL GOL . 
E 3 HOH A 1 301 67 HOH HOH . 
E 3 HOH A 2 302 11 HOH HOH . 
E 3 HOH A 3 303 30 HOH HOH . 
E 3 HOH A 4 304 64 HOH HOH . 
E 3 HOH A 5 305 33 HOH HOH . 
E 3 HOH A 6 306 3 HOH HOH . 
E 3 HOH A 7 307 58 HOH HOH . 
E 3 HOH A 8 308 56 HOH HOH . 
E 3 HOH A 9 309 70 HOH HOH . 
E 3 HOH A 10 310 23 HOH HOH . 
E 3 HOH A 11 311 53 HOH HOH . 
E 3 HOH A 12 312 12 HOH HOH . 
E 3 HOH A 13 313 34 HOH HOH . 
E 3 HOH A 14 314 1 HOH HOH . 
E 3 HOH A 15 315 24 HOH HOH . 
E 3 HOH A 16 316 19 HOH HOH . 
E 3 HOH A 17 317 43 HOH HOH . 
E 3 HOH A 18 318 25 HOH HOH . 
E 3 HOH A 19 319 69 HOH HOH . 
E 3 HOH A 20 320 50 HOH HOH . 
E 3 HOH A 21 321 17 HOH HOH . 
E 3 HOH A 22 322 48 HOH HOH . 
E 3 HOH A 23 323 16 HOH HOH . 
E 3 HOH A 24 324 35 HOH HOH . 
E 3 HOH A 25 325 47 HOH HOH . 
E 3 HOH A 26 326 49 HOH HOH . 
E 3 HOH A 27 327 9 HOH HOH . 
E 3 HOH A 28 328 5 HOH HOH . 
E 3 HOH A 29 329 7 HOH HOH . 
E 3 HOH A 30 330 18 HOH HOH . 
E 3 HOH A 31 331 4 HOH HOH . 
E 3 HOH A 32 332 10 HOH HOH . 
E 3 HOH A 33 333 2 HOH HOH . 
E 3 HOH A 34 334 21 HOH HOH . 
E 3 HOH A 35 335 61 HOH HOH . 
E 3 HOH A 36 336 37 HOH HOH . 
E 3 HOH A 37 337 52 HOH HOH . 
E 3 HOH A 38 338 44 HOH HOH . 
E 3 HOH A 39 339 20 HOH HOH . 
E 3 HOH A 40 340 14 HOH HOH . 
E 3 HOH A 41 341 27 HOH HOH . 
E 3 HOH A 42 342 29 HOH HOH . 
E 3 HOH A 43 343 59 HOH HOH . 
E 3 HOH A 44 344 40 HOH HOH . 
E 3 HOH A 45 345 32 HOH HOH . 
E 3 HOH A 46 346 62 HOH HOH . 
E 3 HOH A 47 347 60 HOH HOH . 
E 3 HOH A 48 348 41 HOH HOH . 
E 3 HOH A 49 349 63 HOH HOH . 
E 3 HOH A 50 350 6 HOH HOH . 
E 3 HOH A 51 351 66 HOH HOH . 
E 3 HOH A 52 352 15 HOH HOH . 
E 3 HOH A 53 353 26 HOH HOH . 
E 3 HOH A 54 354 65 HOH HOH . 
E 3 HOH A 55 355 51 HOH HOH . 
E 3 HOH A 56 356 46 HOH HOH . 
E 3 HOH A 57 357 31 HOH HOH . 
E 3 HOH A 58 358 28 HOH HOH . 
E 3 HOH A 59 359 38 HOH HOH . 
E 3 HOH A 60 360 39 HOH HOH . 
E 3 HOH A 61 361 13 HOH HOH . 
E 3 HOH A 62 362 36 HOH HOH . 
E 3 HOH A 63 363 57 HOH HOH . 
E 3 HOH A 64 364 42 HOH HOH . 
E 3 HOH A 65 365 55 HOH HOH . 
E 3 HOH A 66 366 22 HOH HOH . 
E 3 HOH A 67 367 8 HOH HOH . 
E 3 HOH A 68 368 45 HOH HOH . 
E 3 HOH A 69 369 71 HOH HOH . 
E 3 HOH A 70 370 54 HOH HOH . 
E 3 HOH A 71 371 72 HOH HOH . 
E 3 HOH A 72 372 68 HOH HOH . 
E 3 HOH A 73 373 73 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 14.886 26.045 76.176 1 50.46 ? C1 GOL 202 A 1 
HETATM 2 O O1 GOL . . . C 2 15.84 26.264 77.196 1 51.75 ? O1 GOL 202 A 1 
HETATM 3 C C2 GOL . . . C 2 14.453 24.582 76.132 1 46.01 ? C2 GOL 202 A 1 
HETATM 4 O O2 GOL . . . C 2 13.06 24.561 75.92 1 47.79 ? O2 GOL 202 A 1 
HETATM 5 C C3 GOL . . . C 2 15.16 23.867 74.977 1 38.74 ? C3 GOL 202 A 1 
HETATM 6 O O3 GOL . . . C 2 15.243 22.468 75.173 1 30.05 ? O3 GOL 202 A 1 
#
_model_server_stats.io_time_ms              66 
_model_server_stats.parse_time_ms           29 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#