data_5V28 # _model_server_result.job_id LCLAGdoWiTi9R0DxO1DKTw _model_server_result.datetime_utc '2024-11-17 04:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v28 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5V28 # _exptl.entry_id 5V28 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5V28 _cell.length_a 58.602 _cell.length_b 58.602 _cell.length_c 231.523 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V28 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 78 A HIS 51 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc2 A OE1 GLU 84 A GLU 57 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc3 A OE2 GLU 84 A GLU 57 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc4 A NE2 HIS 122 A HIS 95 1_555 B FE FE2 . A FE2 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 A SG CYS 152 A CYS 125 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc6 A SG CYS 155 A CYS 128 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc7 A SG CYS 189 A CYS 162 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc8 A SG CYS 192 A CYS 165 1_555 C FE FE2 . A FE2 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 B FE FE2 . A FE2 201 1_555 E O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 5V28 _atom_sites.fract_transf_matrix[1][1] 0.017064 _atom_sites.fract_transf_matrix[1][2] 0.009852 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE2 A 1 201 1 FE2 FE . C 2 FE2 A 1 202 2 FE2 FE . D 3 TRS A 1 203 1 TRS TRS . E 4 HOH A 1 301 1 HOH HOH . E 4 HOH A 2 302 9 HOH HOH . E 4 HOH A 3 303 2 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 8 HOH HOH . E 4 HOH A 6 306 10 HOH HOH . E 4 HOH A 7 307 3 HOH HOH . E 4 HOH A 8 308 6 HOH HOH . E 4 HOH A 9 309 7 HOH HOH . E 4 HOH A 10 310 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 3 16.7 9.275 -11.223 1 59.02 ? C TRS 203 A 1 HETATM 2 C C1 TRS . . . D 3 16.643 10.212 -10.031 1 48.41 ? C1 TRS 203 A 1 HETATM 3 C C2 TRS . . . D 3 15.327 8.74 -11.528 1 55.08 ? C2 TRS 203 A 1 HETATM 4 C C3 TRS . . . D 3 17.608 8.086 -10.927 1 60.31 ? C3 TRS 203 A 1 HETATM 5 N N TRS . . . D 3 17.079 10.005 -12.446 1 54.53 ? N TRS 203 A 1 HETATM 6 O O1 TRS . . . D 3 17.837 10.962 -9.921 1 49.88 ? O1 TRS 203 A 1 HETATM 7 O O2 TRS . . . D 3 15.458 8.146 -12.806 1 59.54 ? O2 TRS 203 A 1 HETATM 8 O O3 TRS . . . D 3 17.047 7.377 -9.84 1 55.59 ? O3 TRS 203 A 1 HETATM 9 H H11 TRS . . . D 3 16.492 9.633 -9.12 1 58.38 ? H11 TRS 203 A 1 HETATM 10 H H12 TRS . . . D 3 15.797 10.89 -10.142 1 58.38 ? H12 TRS 203 A 1 HETATM 11 H H21 TRS . . . D 3 14.593 9.546 -11.549 1 66.38 ? H21 TRS 203 A 1 HETATM 12 H H22 TRS . . . D 3 15.027 7.999 -10.786 1 66.38 ? H22 TRS 203 A 1 HETATM 13 H H31 TRS . . . D 3 17.676 7.439 -11.801 1 72.66 ? H31 TRS 203 A 1 HETATM 14 H H32 TRS . . . D 3 18.609 8.433 -10.672 1 72.66 ? H32 TRS 203 A 1 HETATM 15 H HN1 TRS . . . D 3 18.018 10.39 -12.421 1 65.72 ? HN1 TRS 203 A 1 HETATM 16 H HN2 TRS . . . D 3 16.374 10.662 -12.768 1 65.72 ? HN2 TRS 203 A 1 HETATM 17 H HN3 TRS . . . D 3 17.113 9.297 -13.164 1 65.72 ? HN3 TRS 203 A 1 HETATM 18 H HO1 TRS . . . D 3 18.448 10.712 -10.645 1 60.14 ? HO1 TRS 203 A 1 HETATM 19 H HO2 TRS . . . D 3 14.596 7.768 -13.081 1 71.74 ? HO2 TRS 203 A 1 HETATM 20 H HO3 TRS . . . D 3 17.612 6.605 -9.627 1 67 ? HO3 TRS 203 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 63 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 550 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #