data_5V2K
#
_model_server_result.job_id            lK23y6UpHAeg6xL2JqJZbg 
_model_server_result.datetime_utc      '2024-10-18 16:22:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v2k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":501}' 
#
_entry.id    5V2K 
#
_exptl.entry_id    5V2K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V2K 
_cell.length_a            65.122 
_cell.length_b            87.27 
_cell.length_c            162.674 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V2K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,G,K 1 1 
B,D,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 H N N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
_pdbx_entity_branch_link.link_id                     1 
_pdbx_entity_branch_link.details                     ? 
_pdbx_entity_branch_link.entity_id                   2 
_pdbx_entity_branch_link.entity_branch_list_num_1    2 
_pdbx_entity_branch_link.entity_branch_list_num_2    1 
_pdbx_entity_branch_link.comp_id_1                   BGC 
_pdbx_entity_branch_link.comp_id_2                   BGC 
_pdbx_entity_branch_link.atom_id_1                   C1 
_pdbx_entity_branch_link.leaving_atom_id_1           O1 
_pdbx_entity_branch_link.atom_stereo_config_1        . 
_pdbx_entity_branch_link.atom_id_2                   O3 
_pdbx_entity_branch_link.leaving_atom_id_2           HO3 
_pdbx_entity_branch_link.atom_stereo_config_2        . 
_pdbx_entity_branch_link.value_order                 sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n C BGC 1 C 1 BGC D 2 LB2 
2 n C BGC 2 C 2 BGC D 2 LB2 
2 n D BGC 1 D 1 BGC D 4 LB2 
2 n D BGC 2 D 2 BGC D 4 LB2 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OH TYR 177 A TYR 177 1_555 E C1 BGC . A BGC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale2 A OH TYR 180 A TYR 180 1_555 C C1 BGC . C BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale3 B OH TYR 177 B TYR 177 1_555 H C1 BGC . B BGC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? 
covale ? covale4 B OH TYR 180 B TYR 180 1_555 D C1 BGC . D BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
covale ? covale5 C O3 BGC . C BGC 1 1_555 C C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 sing 
covale ? covale6 D O3 BGC . D BGC 1 1_555 D C1 BGC . D BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 sing 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                BGC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     beta-D-glucose;D-glucose;glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C3 BGC sing 85 n n 
C2 C1 BGC sing 86 n n 
C2 O2 BGC sing 87 n n 
C2 H2 BGC sing 88 n n 
C3 C4 BGC sing 89 n n 
C3 O3 BGC sing 90 n n 
C3 H3 BGC sing 91 n n 
C4 C5 BGC sing 92 n n 
C4 O4 BGC sing 93 n n 
C4 H4 BGC sing 94 n n 
C5 C6 BGC sing 95 n n 
C5 O5 BGC sing 96 n n 
C5 H5 BGC sing 97 n n 
C6 O6 BGC sing 98 n n 
C6 H61 BGC sing 99 n n 
C6 H62 BGC sing 100 n n 
C1 O1 BGC sing 101 n n 
C1 O5 BGC sing 102 n n 
C1 H1 BGC sing 103 n n 
O1 HO1 BGC sing 104 n n 
O2 HO2 BGC sing 105 n n 
O3 HO3 BGC sing 106 n n 
O4 HO4 BGC sing 107 n n 
O6 HO6 BGC sing 108 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
BGC b-D-glucopyranose 'COMMON NAME' GMML 1 
BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5V2K 
_atom_sites.fract_transf_matrix[1][1]    0.015356 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006147 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 BGC A 1 501 1 BGC BGC . 
F 4 UDP A 1 503 5 UDP UDP . 
G 5 7WV A 1 504 7 7WV OBA . 
H 3 BGC B 1 501 3 BGC BGC . 
I 4 UDP B 1 503 6 UDP UDP . 
J 5 7WV B 1 504 8 7WV OBA . 
K 6 HOH A 1 601 65 HOH HOH . 
K 6 HOH A 2 602 88 HOH HOH . 
K 6 HOH A 3 603 100 HOH HOH . 
K 6 HOH A 4 604 6 HOH HOH . 
K 6 HOH A 5 605 1 HOH HOH . 
K 6 HOH A 6 606 69 HOH HOH . 
K 6 HOH A 7 607 54 HOH HOH . 
K 6 HOH A 8 608 86 HOH HOH . 
K 6 HOH A 9 609 105 HOH HOH . 
K 6 HOH A 10 610 23 HOH HOH . 
K 6 HOH A 11 611 108 HOH HOH . 
K 6 HOH A 12 612 5 HOH HOH . 
K 6 HOH A 13 613 92 HOH HOH . 
K 6 HOH A 14 614 115 HOH HOH . 
K 6 HOH A 15 615 82 HOH HOH . 
K 6 HOH A 16 616 53 HOH HOH . 
K 6 HOH A 17 617 24 HOH HOH . 
K 6 HOH A 18 618 77 HOH HOH . 
K 6 HOH A 19 619 104 HOH HOH . 
K 6 HOH A 20 620 106 HOH HOH . 
K 6 HOH A 21 621 61 HOH HOH . 
K 6 HOH A 22 622 90 HOH HOH . 
K 6 HOH A 23 623 44 HOH HOH . 
K 6 HOH A 24 624 22 HOH HOH . 
K 6 HOH A 25 625 94 HOH HOH . 
K 6 HOH A 26 626 29 HOH HOH . 
K 6 HOH A 27 627 12 HOH HOH . 
K 6 HOH A 28 628 15 HOH HOH . 
K 6 HOH A 29 629 31 HOH HOH . 
K 6 HOH A 30 630 27 HOH HOH . 
K 6 HOH A 31 631 8 HOH HOH . 
K 6 HOH A 32 632 40 HOH HOH . 
K 6 HOH A 33 633 43 HOH HOH . 
K 6 HOH A 34 634 2 HOH HOH . 
K 6 HOH A 35 635 87 HOH HOH . 
K 6 HOH A 36 636 74 HOH HOH . 
K 6 HOH A 37 637 72 HOH HOH . 
K 6 HOH A 38 638 30 HOH HOH . 
K 6 HOH A 39 639 89 HOH HOH . 
K 6 HOH A 40 640 50 HOH HOH . 
K 6 HOH A 41 641 48 HOH HOH . 
K 6 HOH A 42 642 3 HOH HOH . 
K 6 HOH A 43 643 67 HOH HOH . 
K 6 HOH A 44 644 62 HOH HOH . 
K 6 HOH A 45 645 16 HOH HOH . 
K 6 HOH A 46 646 75 HOH HOH . 
K 6 HOH A 47 647 107 HOH HOH . 
K 6 HOH A 48 648 55 HOH HOH . 
K 6 HOH A 49 649 99 HOH HOH . 
K 6 HOH A 50 650 25 HOH HOH . 
K 6 HOH A 51 651 81 HOH HOH . 
K 6 HOH A 52 652 95 HOH HOH . 
K 6 HOH A 53 653 34 HOH HOH . 
K 6 HOH A 54 654 49 HOH HOH . 
K 6 HOH A 55 655 98 HOH HOH . 
K 6 HOH A 56 656 38 HOH HOH . 
K 6 HOH A 57 657 63 HOH HOH . 
K 6 HOH A 58 658 84 HOH HOH . 
K 6 HOH A 59 659 39 HOH HOH . 
K 6 HOH A 60 660 80 HOH HOH . 
K 6 HOH A 61 661 83 HOH HOH . 
K 6 HOH A 62 662 47 HOH HOH . 
K 6 HOH A 63 663 64 HOH HOH . 
K 6 HOH A 64 664 79 HOH HOH . 
K 6 HOH A 65 665 113 HOH HOH . 
K 6 HOH A 66 666 42 HOH HOH . 
K 6 HOH A 67 667 114 HOH HOH . 
K 6 HOH A 68 668 103 HOH HOH . 
K 6 HOH A 69 669 41 HOH HOH . 
K 6 HOH A 70 670 17 HOH HOH . 
K 6 HOH A 71 671 33 HOH HOH . 
K 6 HOH A 72 672 91 HOH HOH . 
K 6 HOH A 73 673 93 HOH HOH . 
K 6 HOH A 74 674 97 HOH HOH . 
K 6 HOH A 75 675 56 HOH HOH . 
K 6 HOH A 76 676 96 HOH HOH . 
L 6 HOH B 1 601 18 HOH HOH . 
L 6 HOH B 2 602 13 HOH HOH . 
L 6 HOH B 3 603 21 HOH HOH . 
L 6 HOH B 4 604 58 HOH HOH . 
L 6 HOH B 5 605 14 HOH HOH . 
L 6 HOH B 6 606 101 HOH HOH . 
L 6 HOH B 7 607 51 HOH HOH . 
L 6 HOH B 8 608 102 HOH HOH . 
L 6 HOH B 9 609 78 HOH HOH . 
L 6 HOH B 10 610 20 HOH HOH . 
L 6 HOH B 11 611 36 HOH HOH . 
L 6 HOH B 12 612 10 HOH HOH . 
L 6 HOH B 13 613 7 HOH HOH . 
L 6 HOH B 14 614 11 HOH HOH . 
L 6 HOH B 15 615 19 HOH HOH . 
L 6 HOH B 16 616 60 HOH HOH . 
L 6 HOH B 17 617 32 HOH HOH . 
L 6 HOH B 18 618 57 HOH HOH . 
L 6 HOH B 19 619 37 HOH HOH . 
L 6 HOH B 20 620 52 HOH HOH . 
L 6 HOH B 21 621 26 HOH HOH . 
L 6 HOH B 22 622 45 HOH HOH . 
L 6 HOH B 23 623 4 HOH HOH . 
L 6 HOH B 24 624 76 HOH HOH . 
L 6 HOH B 25 625 109 HOH HOH . 
L 6 HOH B 26 626 28 HOH HOH . 
L 6 HOH B 27 627 68 HOH HOH . 
L 6 HOH B 28 628 85 HOH HOH . 
L 6 HOH B 29 629 9 HOH HOH . 
L 6 HOH B 30 630 46 HOH HOH . 
L 6 HOH B 31 631 71 HOH HOH . 
L 6 HOH B 32 632 35 HOH HOH . 
L 6 HOH B 33 633 111 HOH HOH . 
L 6 HOH B 34 634 66 HOH HOH . 
L 6 HOH B 35 635 59 HOH HOH . 
L 6 HOH B 36 636 73 HOH HOH . 
L 6 HOH B 37 637 116 HOH HOH . 
L 6 HOH B 38 638 70 HOH HOH . 
L 6 HOH B 39 639 112 HOH HOH . 
L 6 HOH B 40 640 110 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 BGC . . . H 3 3.5 -32.72 42.397 1 66.29 ? C2 BGC 501 B 1 
HETATM 2 C C3 BGC . . . H 3 4.38 -31.59 41.9 1 68.37 ? C3 BGC 501 B 1 
HETATM 3 C C4 BGC . . . H 3 5.349 -32.109 40.786 1 71.33 ? C4 BGC 501 B 1 
HETATM 4 C C5 BGC . . . H 3 4.513 -32.91 39.768 1 65.22 ? C5 BGC 501 B 1 
HETATM 5 C C6 BGC . . . H 3 5.299 -33.481 38.518 1 58.2 ? C6 BGC 501 B 1 
HETATM 6 C C1 BGC . . . H 3 2.946 -33.609 41.341 1 62.57 ? C1 BGC 501 B 1 
HETATM 7 O O2 BGC . . . H 3 2.465 -32.119 43.217 1 56.6 ? O2 BGC 501 B 1 
HETATM 8 O O3 BGC . . . H 3 5.112 -30.998 42.955 1 70.72 ? O3 BGC 501 B 1 
HETATM 9 O O4 BGC . . . H 3 5.951 -31.009 40.098 1 70.32 ? O4 BGC 501 B 1 
HETATM 10 O O5 BGC . . . H 3 3.963 -34.015 40.453 1 59.06 ? O5 BGC 501 B 1 
HETATM 11 O O6 BGC . . . H 3 6.54 -33.952 38.853 1 63.54 ? O6 BGC 501 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           11 
#