data_5V2K # _model_server_result.job_id VeyfI17zTPrvrOHuQ5RPHQ _model_server_result.datetime_utc '2024-10-18 16:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v2k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":504}' # _entry.id 5V2K # _exptl.entry_id 5V2K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 201.017 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-bromobenzoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V2K _cell.length_a 65.122 _cell.length_b 87.27 _cell.length_c 162.674 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V2K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,K 1 1 B,D,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 BGC _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O3 _pdbx_entity_branch_link.leaving_atom_id_2 HO3 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC D 2 LB2 2 n C BGC 2 C 2 BGC D 2 LB2 2 n D BGC 1 D 1 BGC D 4 LB2 2 n D BGC 2 D 2 BGC D 4 LB2 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OH TYR 177 A TYR 177 1_555 E C1 BGC . A BGC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale2 A OH TYR 180 A TYR 180 1_555 C C1 BGC . C BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? covale ? covale3 B OH TYR 177 B TYR 177 1_555 H C1 BGC . B BGC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale4 B OH TYR 180 B TYR 180 1_555 D C1 BGC . D BGC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale5 C O3 BGC . C BGC 1 1_555 C C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 sing covale ? covale6 D O3 BGC . D BGC 1 1_555 D C1 BGC . D BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 sing # _chem_comp.formula 'C7 H5 Br O2' _chem_comp.formula_weight 201.017 _chem_comp.id 7WV _chem_comp.mon_nstd_flag . _chem_comp.name '2-bromobenzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O08 C07 7WV doub 1 n n BR1 C04 7WV sing 2 n n C07 O09 7WV sing 3 n n C07 C05 7WV sing 4 n n C05 C04 7WV doub 5 n y C05 C06 7WV sing 6 n y C04 C03 7WV sing 7 n y C06 C01 7WV doub 8 n y C03 C02 7WV doub 9 n y C01 C02 7WV sing 10 n y C01 H1 7WV sing 11 n n C02 H2 7WV sing 12 n n C03 H3 7WV sing 13 n n C06 H4 7WV sing 14 n n O09 H5 7WV sing 15 n n # _atom_sites.entry_id 5V2K _atom_sites.fract_transf_matrix[1][1] 0.015356 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011459 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BGC A 1 501 1 BGC BGC . F 4 UDP A 1 503 5 UDP UDP . G 5 7WV A 1 504 7 7WV OBA . H 3 BGC B 1 501 3 BGC BGC . I 4 UDP B 1 503 6 UDP UDP . J 5 7WV B 1 504 8 7WV OBA . K 6 HOH A 1 601 65 HOH HOH . K 6 HOH A 2 602 88 HOH HOH . K 6 HOH A 3 603 100 HOH HOH . K 6 HOH A 4 604 6 HOH HOH . K 6 HOH A 5 605 1 HOH HOH . K 6 HOH A 6 606 69 HOH HOH . K 6 HOH A 7 607 54 HOH HOH . K 6 HOH A 8 608 86 HOH HOH . K 6 HOH A 9 609 105 HOH HOH . K 6 HOH A 10 610 23 HOH HOH . K 6 HOH A 11 611 108 HOH HOH . K 6 HOH A 12 612 5 HOH HOH . K 6 HOH A 13 613 92 HOH HOH . K 6 HOH A 14 614 115 HOH HOH . K 6 HOH A 15 615 82 HOH HOH . K 6 HOH A 16 616 53 HOH HOH . K 6 HOH A 17 617 24 HOH HOH . K 6 HOH A 18 618 77 HOH HOH . K 6 HOH A 19 619 104 HOH HOH . K 6 HOH A 20 620 106 HOH HOH . K 6 HOH A 21 621 61 HOH HOH . K 6 HOH A 22 622 90 HOH HOH . K 6 HOH A 23 623 44 HOH HOH . K 6 HOH A 24 624 22 HOH HOH . K 6 HOH A 25 625 94 HOH HOH . K 6 HOH A 26 626 29 HOH HOH . K 6 HOH A 27 627 12 HOH HOH . K 6 HOH A 28 628 15 HOH HOH . K 6 HOH A 29 629 31 HOH HOH . K 6 HOH A 30 630 27 HOH HOH . K 6 HOH A 31 631 8 HOH HOH . K 6 HOH A 32 632 40 HOH HOH . K 6 HOH A 33 633 43 HOH HOH . K 6 HOH A 34 634 2 HOH HOH . K 6 HOH A 35 635 87 HOH HOH . K 6 HOH A 36 636 74 HOH HOH . K 6 HOH A 37 637 72 HOH HOH . K 6 HOH A 38 638 30 HOH HOH . K 6 HOH A 39 639 89 HOH HOH . K 6 HOH A 40 640 50 HOH HOH . K 6 HOH A 41 641 48 HOH HOH . K 6 HOH A 42 642 3 HOH HOH . K 6 HOH A 43 643 67 HOH HOH . K 6 HOH A 44 644 62 HOH HOH . K 6 HOH A 45 645 16 HOH HOH . K 6 HOH A 46 646 75 HOH HOH . K 6 HOH A 47 647 107 HOH HOH . K 6 HOH A 48 648 55 HOH HOH . K 6 HOH A 49 649 99 HOH HOH . K 6 HOH A 50 650 25 HOH HOH . K 6 HOH A 51 651 81 HOH HOH . K 6 HOH A 52 652 95 HOH HOH . K 6 HOH A 53 653 34 HOH HOH . K 6 HOH A 54 654 49 HOH HOH . K 6 HOH A 55 655 98 HOH HOH . K 6 HOH A 56 656 38 HOH HOH . K 6 HOH A 57 657 63 HOH HOH . K 6 HOH A 58 658 84 HOH HOH . K 6 HOH A 59 659 39 HOH HOH . K 6 HOH A 60 660 80 HOH HOH . K 6 HOH A 61 661 83 HOH HOH . K 6 HOH A 62 662 47 HOH HOH . K 6 HOH A 63 663 64 HOH HOH . K 6 HOH A 64 664 79 HOH HOH . K 6 HOH A 65 665 113 HOH HOH . K 6 HOH A 66 666 42 HOH HOH . K 6 HOH A 67 667 114 HOH HOH . K 6 HOH A 68 668 103 HOH HOH . K 6 HOH A 69 669 41 HOH HOH . K 6 HOH A 70 670 17 HOH HOH . K 6 HOH A 71 671 33 HOH HOH . K 6 HOH A 72 672 91 HOH HOH . K 6 HOH A 73 673 93 HOH HOH . K 6 HOH A 74 674 97 HOH HOH . K 6 HOH A 75 675 56 HOH HOH . K 6 HOH A 76 676 96 HOH HOH . L 6 HOH B 1 601 18 HOH HOH . L 6 HOH B 2 602 13 HOH HOH . L 6 HOH B 3 603 21 HOH HOH . L 6 HOH B 4 604 58 HOH HOH . L 6 HOH B 5 605 14 HOH HOH . L 6 HOH B 6 606 101 HOH HOH . L 6 HOH B 7 607 51 HOH HOH . L 6 HOH B 8 608 102 HOH HOH . L 6 HOH B 9 609 78 HOH HOH . L 6 HOH B 10 610 20 HOH HOH . L 6 HOH B 11 611 36 HOH HOH . L 6 HOH B 12 612 10 HOH HOH . L 6 HOH B 13 613 7 HOH HOH . L 6 HOH B 14 614 11 HOH HOH . L 6 HOH B 15 615 19 HOH HOH . L 6 HOH B 16 616 60 HOH HOH . L 6 HOH B 17 617 32 HOH HOH . L 6 HOH B 18 618 57 HOH HOH . L 6 HOH B 19 619 37 HOH HOH . L 6 HOH B 20 620 52 HOH HOH . L 6 HOH B 21 621 26 HOH HOH . L 6 HOH B 22 622 45 HOH HOH . L 6 HOH B 23 623 4 HOH HOH . L 6 HOH B 24 624 76 HOH HOH . L 6 HOH B 25 625 109 HOH HOH . L 6 HOH B 26 626 28 HOH HOH . L 6 HOH B 27 627 68 HOH HOH . L 6 HOH B 28 628 85 HOH HOH . L 6 HOH B 29 629 9 HOH HOH . L 6 HOH B 30 630 46 HOH HOH . L 6 HOH B 31 631 71 HOH HOH . L 6 HOH B 32 632 35 HOH HOH . L 6 HOH B 33 633 111 HOH HOH . L 6 HOH B 34 634 66 HOH HOH . L 6 HOH B 35 635 59 HOH HOH . L 6 HOH B 36 636 73 HOH HOH . L 6 HOH B 37 637 116 HOH HOH . L 6 HOH B 38 638 70 HOH HOH . L 6 HOH B 39 639 112 HOH HOH . L 6 HOH B 40 640 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 7WV . . . J 5 -3.713 -27.546 43.047 1 45.35 ? C01 7WV 504 B 1 HETATM 2 C C02 7WV . . . J 5 -4.002 -28.904 43.198 1 43.4 ? C02 7WV 504 B 1 HETATM 3 C C03 7WV . . . J 5 -4.293 -29.693 42.082 1 44.73 ? C03 7WV 504 B 1 HETATM 4 C C04 7WV . . . J 5 -4.288 -29.078 40.82 1 50.76 ? C04 7WV 504 B 1 HETATM 5 C C05 7WV . . . J 5 -4.003 -27.724 40.629 1 47.1 ? C05 7WV 504 B 1 HETATM 6 C C06 7WV . . . J 5 -3.718 -26.959 41.783 1 47.79 ? C06 7WV 504 B 1 HETATM 7 C C07 7WV . . . J 5 -3.995 -26.974 39.246 1 56.7 ? C07 7WV 504 B 1 HETATM 8 O O08 7WV . . . J 5 -3.74 -27.68 38.246 1 59.7 ? O08 7WV 504 B 1 HETATM 9 O O09 7WV . . . J 5 -4.225 -25.739 39.252 1 53.12 -1 O09 7WV 504 B 1 HETATM 10 BR BR1 7WV . . . J 5 -4.719 -30.295 39.267 1 62.08 ? BR1 7WV 504 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #