data_5V2L # _model_server_result.job_id 8uXUnm_ChHzKG9EamAOMvg _model_server_result.datetime_utc '2025-08-31 15:13:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5V2L # _exptl.entry_id 5V2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V2L _cell.length_a 81.953 _cell.length_b 97.684 _cell.length_c 46.307 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 5V2L _atom_sites.fract_transf_matrix[1][1] 0.012202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 PO4 A 1 402 1 PO4 PO4 . D 4 HOH A 1 501 107 HOH HOH . D 4 HOH A 2 502 70 HOH HOH . D 4 HOH A 3 503 48 HOH HOH . D 4 HOH A 4 504 105 HOH HOH . D 4 HOH A 5 505 98 HOH HOH . D 4 HOH A 6 506 100 HOH HOH . D 4 HOH A 7 507 3 HOH HOH . D 4 HOH A 8 508 97 HOH HOH . D 4 HOH A 9 509 61 HOH HOH . D 4 HOH A 10 510 9 HOH HOH . D 4 HOH A 11 511 109 HOH HOH . D 4 HOH A 12 512 111 HOH HOH . D 4 HOH A 13 513 16 HOH HOH . D 4 HOH A 14 514 8 HOH HOH . D 4 HOH A 15 515 103 HOH HOH . D 4 HOH A 16 516 24 HOH HOH . D 4 HOH A 17 517 13 HOH HOH . D 4 HOH A 18 518 76 HOH HOH . D 4 HOH A 19 519 28 HOH HOH . D 4 HOH A 20 520 68 HOH HOH . D 4 HOH A 21 521 99 HOH HOH . D 4 HOH A 22 522 110 HOH HOH . D 4 HOH A 23 523 34 HOH HOH . D 4 HOH A 24 524 20 HOH HOH . D 4 HOH A 25 525 64 HOH HOH . D 4 HOH A 26 526 78 HOH HOH . D 4 HOH A 27 527 10 HOH HOH . D 4 HOH A 28 528 108 HOH HOH . D 4 HOH A 29 529 73 HOH HOH . D 4 HOH A 30 530 11 HOH HOH . D 4 HOH A 31 531 22 HOH HOH . D 4 HOH A 32 532 43 HOH HOH . D 4 HOH A 33 533 17 HOH HOH . D 4 HOH A 34 534 31 HOH HOH . D 4 HOH A 35 535 15 HOH HOH . D 4 HOH A 36 536 88 HOH HOH . D 4 HOH A 37 537 63 HOH HOH . D 4 HOH A 38 538 66 HOH HOH . D 4 HOH A 39 539 7 HOH HOH . D 4 HOH A 40 540 35 HOH HOH . D 4 HOH A 41 541 14 HOH HOH . D 4 HOH A 42 542 87 HOH HOH . D 4 HOH A 43 543 39 HOH HOH . D 4 HOH A 44 544 90 HOH HOH . D 4 HOH A 45 545 25 HOH HOH . D 4 HOH A 46 546 5 HOH HOH . D 4 HOH A 47 547 38 HOH HOH . D 4 HOH A 48 548 2 HOH HOH . D 4 HOH A 49 549 83 HOH HOH . D 4 HOH A 50 550 69 HOH HOH . D 4 HOH A 51 551 1 HOH HOH . D 4 HOH A 52 552 27 HOH HOH . D 4 HOH A 53 553 12 HOH HOH . D 4 HOH A 54 554 45 HOH HOH . D 4 HOH A 55 555 106 HOH HOH . D 4 HOH A 56 556 93 HOH HOH . D 4 HOH A 57 557 62 HOH HOH . D 4 HOH A 58 558 52 HOH HOH . D 4 HOH A 59 559 6 HOH HOH . D 4 HOH A 60 560 18 HOH HOH . D 4 HOH A 61 561 30 HOH HOH . D 4 HOH A 62 562 47 HOH HOH . D 4 HOH A 63 563 41 HOH HOH . D 4 HOH A 64 564 42 HOH HOH . D 4 HOH A 65 565 36 HOH HOH . D 4 HOH A 66 566 81 HOH HOH . D 4 HOH A 67 567 54 HOH HOH . D 4 HOH A 68 568 29 HOH HOH . D 4 HOH A 69 569 72 HOH HOH . D 4 HOH A 70 570 56 HOH HOH . D 4 HOH A 71 571 40 HOH HOH . D 4 HOH A 72 572 58 HOH HOH . D 4 HOH A 73 573 101 HOH HOH . D 4 HOH A 74 574 4 HOH HOH . D 4 HOH A 75 575 74 HOH HOH . D 4 HOH A 76 576 51 HOH HOH . D 4 HOH A 77 577 89 HOH HOH . D 4 HOH A 78 578 50 HOH HOH . D 4 HOH A 79 579 26 HOH HOH . D 4 HOH A 80 580 60 HOH HOH . D 4 HOH A 81 581 32 HOH HOH . D 4 HOH A 82 582 79 HOH HOH . D 4 HOH A 83 583 59 HOH HOH . D 4 HOH A 84 584 77 HOH HOH . D 4 HOH A 85 585 23 HOH HOH . D 4 HOH A 86 586 67 HOH HOH . D 4 HOH A 87 587 57 HOH HOH . D 4 HOH A 88 588 94 HOH HOH . D 4 HOH A 89 589 19 HOH HOH . D 4 HOH A 90 590 21 HOH HOH . D 4 HOH A 91 591 55 HOH HOH . D 4 HOH A 92 592 37 HOH HOH . D 4 HOH A 93 593 96 HOH HOH . D 4 HOH A 94 594 44 HOH HOH . D 4 HOH A 95 595 49 HOH HOH . D 4 HOH A 96 596 102 HOH HOH . D 4 HOH A 97 597 46 HOH HOH . D 4 HOH A 98 598 33 HOH HOH . D 4 HOH A 99 599 71 HOH HOH . D 4 HOH A 100 600 95 HOH HOH . D 4 HOH A 101 601 91 HOH HOH . D 4 HOH A 102 602 65 HOH HOH . D 4 HOH A 103 603 75 HOH HOH . D 4 HOH A 104 604 86 HOH HOH . D 4 HOH A 105 605 84 HOH HOH . D 4 HOH A 106 606 104 HOH HOH . D 4 HOH A 107 607 82 HOH HOH . D 4 HOH A 108 608 80 HOH HOH . D 4 HOH A 109 609 112 HOH HOH . D 4 HOH A 110 610 53 HOH HOH . D 4 HOH A 111 611 92 HOH HOH . D 4 HOH A 112 612 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 -12.582 17.026 -13.144 0.9 102.91 ? PG ATP 401 A 1 HETATM 2 O O1G ATP . . . B 2 -11.367 16.392 -13.863 0.9 79.29 ? O1G ATP 401 A 1 HETATM 3 O O2G ATP . . . B 2 -12.24 17.309 -11.722 0.9 86.92 ? O2G ATP 401 A 1 HETATM 4 O O3G ATP . . . B 2 -12.957 18.349 -13.846 0.9 87.01 ? O3G ATP 401 A 1 HETATM 5 P PB ATP . . . B 2 -14.091 14.493 -12.716 0.9 89.27 ? PB ATP 401 A 1 HETATM 6 O O1B ATP . . . B 2 -14.611 13.648 -13.822 0.9 77.95 ? O1B ATP 401 A 1 HETATM 7 O O2B ATP . . . B 2 -12.733 13.87 -12.107 0.9 89.41 ? O2B ATP 401 A 1 HETATM 8 O O3B ATP . . . B 2 -13.844 16.012 -13.216 0.9 81.18 ? O3B ATP 401 A 1 HETATM 9 P PA ATP . . . B 2 -15.251 15.469 -10.161 0.9 90.41 ? PA ATP 401 A 1 HETATM 10 O O1A ATP . . . B 2 -16.582 15.022 -9.368 0.9 62.25 ? O1A ATP 401 A 1 HETATM 11 O O2A ATP . . . B 2 -14.013 15.249 -9.365 0.9 89.47 ? O2A ATP 401 A 1 HETATM 12 O O3A ATP . . . B 2 -15.218 14.661 -11.563 0.9 69.53 ? O3A ATP 401 A 1 HETATM 13 O O5' ATP . . . B 2 -15.38 16.992 -10.62 0.9 79.94 ? O5' ATP 401 A 1 HETATM 14 C C5' ATP . . . B 2 -16.251 17.311 -11.687 0.9 68.41 ? C5' ATP 401 A 1 HETATM 15 C C4' ATP . . . B 2 -16.591 18.782 -11.67 0.9 68.4 ? C4' ATP 401 A 1 HETATM 16 O O4' ATP . . . B 2 -17.992 18.887 -11.955 0.9 57.08 ? O4' ATP 401 A 1 HETATM 17 C C3' ATP . . . B 2 -16.438 19.398 -10.267 0.9 72.7 ? C3' ATP 401 A 1 HETATM 18 O O3' ATP . . . B 2 -15.107 19.875 -10.042 0.9 83.98 ? O3' ATP 401 A 1 HETATM 19 C C2' ATP . . . B 2 -17.433 20.562 -10.343 0.9 66.29 ? C2' ATP 401 A 1 HETATM 20 O O2' ATP . . . B 2 -16.841 21.696 -10.996 0.9 68.19 ? O2' ATP 401 A 1 HETATM 21 C C1' ATP . . . B 2 -18.572 19.951 -11.19 0.9 63.92 ? C1' ATP 401 A 1 HETATM 22 N N9 ATP . . . B 2 -19.638 19.4 -10.36 0.9 43.14 ? N9 ATP 401 A 1 HETATM 23 C C8 ATP . . . B 2 -19.549 18.512 -9.332 0.9 38.23 ? C8 ATP 401 A 1 HETATM 24 N N7 ATP . . . B 2 -20.708 18.264 -8.778 0.9 33.16 ? N7 ATP 401 A 1 HETATM 25 C C5 ATP . . . B 2 -21.584 19.044 -9.467 0.9 34.13 ? C5 ATP 401 A 1 HETATM 26 C C6 ATP . . . B 2 -22.952 19.282 -9.388 0.9 27.95 ? C6 ATP 401 A 1 HETATM 27 N N6 ATP . . . B 2 -23.754 18.69 -8.482 0.9 23.45 ? N6 ATP 401 A 1 HETATM 28 N N1 ATP . . . B 2 -23.467 20.135 -10.256 0.9 29.19 ? N1 ATP 401 A 1 HETATM 29 C C2 ATP . . . B 2 -22.715 20.738 -11.158 0.9 31.72 ? C2 ATP 401 A 1 HETATM 30 N N3 ATP . . . B 2 -21.425 20.618 -11.326 0.9 32.28 ? N3 ATP 401 A 1 HETATM 31 C C4 ATP . . . B 2 -20.917 19.761 -10.457 0.9 36.76 ? C4 ATP 401 A 1 HETATM 32 H "H5'1" ATP . . . B 2 -17.168 16.73 -11.589 0.9 82.08 ? "H5'1" ATP 401 A 1 HETATM 33 H "H5'2" ATP . . . B 2 -15.768 17.065 -12.632 0.9 82.08 ? "H5'2" ATP 401 A 1 HETATM 34 H H4' ATP . . . B 2 -16 19.329 -12.405 0.9 82.07 ? H4' ATP 401 A 1 HETATM 35 H H3' ATP . . . B 2 -16.73 18.685 -9.496 0.9 87.23 ? H3' ATP 401 A 1 HETATM 36 H HO3' ATP . . . B 2 -14.921 19.75 -9.102 0.9 100.77 ? HO3' ATP 401 A 1 HETATM 37 H H2' ATP . . . B 2 -17.792 20.831 -9.349 0.9 79.55 ? H2' ATP 401 A 1 HETATM 38 H HO2' ATP . . . B 2 -17.498 22.404 -10.978 0.9 81.82 ? HO2' ATP 401 A 1 HETATM 39 H H1' ATP . . . B 2 -18.981 20.708 -11.859 0.9 76.7 ? H1' ATP 401 A 1 HETATM 40 H H8 ATP . . . B 2 -18.624 18.051 -9.018 0.9 45.86 ? H8 ATP 401 A 1 HETATM 41 H HN61 ATP . . . B 2 -23.74 17.726 -8.378 0.9 28.14 ? HN61 ATP 401 A 1 HETATM 42 H HN62 ATP . . . B 2 -24.346 19.228 -7.933 0.9 28.14 ? HN62 ATP 401 A 1 HETATM 43 H H2 ATP . . . B 2 -23.221 21.426 -11.82 0.9 38.06 ? H2 ATP 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #