data_5V2L # _model_server_result.job_id YQK9WQV2xJmQz2qgLUq1cg _model_server_result.datetime_utc '2025-08-31 15:12:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v2l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5V2L # _exptl.entry_id 5V2L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V2L _cell.length_a 81.953 _cell.length_b 97.684 _cell.length_c 46.307 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V2L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 309 n n P O2 PO4 sing 310 n n P O3 PO4 sing 311 n n P O4 PO4 sing 312 n n # _atom_sites.entry_id 5V2L _atom_sites.fract_transf_matrix[1][1] 0.012202 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 401 1 ATP ATP . C 3 PO4 A 1 402 1 PO4 PO4 . D 4 HOH A 1 501 107 HOH HOH . D 4 HOH A 2 502 70 HOH HOH . D 4 HOH A 3 503 48 HOH HOH . D 4 HOH A 4 504 105 HOH HOH . D 4 HOH A 5 505 98 HOH HOH . D 4 HOH A 6 506 100 HOH HOH . D 4 HOH A 7 507 3 HOH HOH . D 4 HOH A 8 508 97 HOH HOH . D 4 HOH A 9 509 61 HOH HOH . D 4 HOH A 10 510 9 HOH HOH . D 4 HOH A 11 511 109 HOH HOH . D 4 HOH A 12 512 111 HOH HOH . D 4 HOH A 13 513 16 HOH HOH . D 4 HOH A 14 514 8 HOH HOH . D 4 HOH A 15 515 103 HOH HOH . D 4 HOH A 16 516 24 HOH HOH . D 4 HOH A 17 517 13 HOH HOH . D 4 HOH A 18 518 76 HOH HOH . D 4 HOH A 19 519 28 HOH HOH . D 4 HOH A 20 520 68 HOH HOH . D 4 HOH A 21 521 99 HOH HOH . D 4 HOH A 22 522 110 HOH HOH . D 4 HOH A 23 523 34 HOH HOH . D 4 HOH A 24 524 20 HOH HOH . D 4 HOH A 25 525 64 HOH HOH . D 4 HOH A 26 526 78 HOH HOH . D 4 HOH A 27 527 10 HOH HOH . D 4 HOH A 28 528 108 HOH HOH . D 4 HOH A 29 529 73 HOH HOH . D 4 HOH A 30 530 11 HOH HOH . D 4 HOH A 31 531 22 HOH HOH . D 4 HOH A 32 532 43 HOH HOH . D 4 HOH A 33 533 17 HOH HOH . D 4 HOH A 34 534 31 HOH HOH . D 4 HOH A 35 535 15 HOH HOH . D 4 HOH A 36 536 88 HOH HOH . D 4 HOH A 37 537 63 HOH HOH . D 4 HOH A 38 538 66 HOH HOH . D 4 HOH A 39 539 7 HOH HOH . D 4 HOH A 40 540 35 HOH HOH . D 4 HOH A 41 541 14 HOH HOH . D 4 HOH A 42 542 87 HOH HOH . D 4 HOH A 43 543 39 HOH HOH . D 4 HOH A 44 544 90 HOH HOH . D 4 HOH A 45 545 25 HOH HOH . D 4 HOH A 46 546 5 HOH HOH . D 4 HOH A 47 547 38 HOH HOH . D 4 HOH A 48 548 2 HOH HOH . D 4 HOH A 49 549 83 HOH HOH . D 4 HOH A 50 550 69 HOH HOH . D 4 HOH A 51 551 1 HOH HOH . D 4 HOH A 52 552 27 HOH HOH . D 4 HOH A 53 553 12 HOH HOH . D 4 HOH A 54 554 45 HOH HOH . D 4 HOH A 55 555 106 HOH HOH . D 4 HOH A 56 556 93 HOH HOH . D 4 HOH A 57 557 62 HOH HOH . D 4 HOH A 58 558 52 HOH HOH . D 4 HOH A 59 559 6 HOH HOH . D 4 HOH A 60 560 18 HOH HOH . D 4 HOH A 61 561 30 HOH HOH . D 4 HOH A 62 562 47 HOH HOH . D 4 HOH A 63 563 41 HOH HOH . D 4 HOH A 64 564 42 HOH HOH . D 4 HOH A 65 565 36 HOH HOH . D 4 HOH A 66 566 81 HOH HOH . D 4 HOH A 67 567 54 HOH HOH . D 4 HOH A 68 568 29 HOH HOH . D 4 HOH A 69 569 72 HOH HOH . D 4 HOH A 70 570 56 HOH HOH . D 4 HOH A 71 571 40 HOH HOH . D 4 HOH A 72 572 58 HOH HOH . D 4 HOH A 73 573 101 HOH HOH . D 4 HOH A 74 574 4 HOH HOH . D 4 HOH A 75 575 74 HOH HOH . D 4 HOH A 76 576 51 HOH HOH . D 4 HOH A 77 577 89 HOH HOH . D 4 HOH A 78 578 50 HOH HOH . D 4 HOH A 79 579 26 HOH HOH . D 4 HOH A 80 580 60 HOH HOH . D 4 HOH A 81 581 32 HOH HOH . D 4 HOH A 82 582 79 HOH HOH . D 4 HOH A 83 583 59 HOH HOH . D 4 HOH A 84 584 77 HOH HOH . D 4 HOH A 85 585 23 HOH HOH . D 4 HOH A 86 586 67 HOH HOH . D 4 HOH A 87 587 57 HOH HOH . D 4 HOH A 88 588 94 HOH HOH . D 4 HOH A 89 589 19 HOH HOH . D 4 HOH A 90 590 21 HOH HOH . D 4 HOH A 91 591 55 HOH HOH . D 4 HOH A 92 592 37 HOH HOH . D 4 HOH A 93 593 96 HOH HOH . D 4 HOH A 94 594 44 HOH HOH . D 4 HOH A 95 595 49 HOH HOH . D 4 HOH A 96 596 102 HOH HOH . D 4 HOH A 97 597 46 HOH HOH . D 4 HOH A 98 598 33 HOH HOH . D 4 HOH A 99 599 71 HOH HOH . D 4 HOH A 100 600 95 HOH HOH . D 4 HOH A 101 601 91 HOH HOH . D 4 HOH A 102 602 65 HOH HOH . D 4 HOH A 103 603 75 HOH HOH . D 4 HOH A 104 604 86 HOH HOH . D 4 HOH A 105 605 84 HOH HOH . D 4 HOH A 106 606 104 HOH HOH . D 4 HOH A 107 607 82 HOH HOH . D 4 HOH A 108 608 80 HOH HOH . D 4 HOH A 109 609 112 HOH HOH . D 4 HOH A 110 610 53 HOH HOH . D 4 HOH A 111 611 92 HOH HOH . D 4 HOH A 112 612 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . C 3 -15.369 15.294 -19.849 0.8 29.93 ? P PO4 402 A 1 HETATM 2 O O1 PO4 . . . C 3 -16.108 14.816 -21.07 0.8 27.23 ? O1 PO4 402 A 1 HETATM 3 O O2 PO4 . . . C 3 -13.927 15.594 -20.184 0.8 32.42 ? O2 PO4 402 A 1 HETATM 4 O O3 PO4 . . . C 3 -15.389 14.247 -18.763 0.8 30.93 ? O3 PO4 402 A 1 HETATM 5 O O4 PO4 . . . C 3 -16.001 16.567 -19.343 0.8 31.97 ? O4 PO4 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #