data_5V31
#
_model_server_result.job_id            0yVjEKEXVUs7Ljdo6HOAIQ 
_model_server_result.datetime_utc      '2024-11-13 05:49:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v31 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5V31 
#
_exptl.entry_id    5V31 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.209 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ARGININE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V31 
_cell.length_a            48.63 
_cell.length_b            81.91 
_cell.length_c            87.16 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V31 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 191 A HIS 189 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc2 A OD1 ASP 193 A ASP 191 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? 
metalc ? metalc3 A OD2 ASP 193 A ASP 191 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc4 A NE2 HIS 270 A HIS 268 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc5 C MN MN . A MN 402 1_555 D O HOH . A HOH 591 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? 
metalc ? metalc6 C MN MN . A MN 402 1_555 D O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? 
#
_chem_comp.formula           'C6 H15 N4 O2 1' 
_chem_comp.formula_weight    175.209 
_chem_comp.id                ARG 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              ARGININE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ARG sing 13 n n 
N H ARG sing 14 n n 
N H2 ARG sing 15 n n 
CA C ARG sing 16 n n 
CA CB ARG sing 17 n n 
CA HA ARG sing 18 n n 
C O ARG doub 19 n n 
C OXT ARG sing 20 n n 
CB CG ARG sing 21 n n 
CB HB2 ARG sing 22 n n 
CB HB3 ARG sing 23 n n 
CG CD ARG sing 24 n n 
CG HG2 ARG sing 25 n n 
CG HG3 ARG sing 26 n n 
CD NE ARG sing 27 n n 
CD HD2 ARG sing 28 n n 
CD HD3 ARG sing 29 n n 
NE CZ ARG sing 30 n n 
NE HE ARG sing 31 n n 
CZ NH1 ARG sing 32 n n 
CZ NH2 ARG doub 33 n n 
NH1 HH11 ARG sing 34 n n 
NH1 HH12 ARG sing 35 n n 
NH2 HH21 ARG sing 36 n n 
NH2 HH22 ARG sing 37 n n 
OXT HXT ARG sing 38 n n 
#
_atom_sites.entry_id                     5V31 
_atom_sites.fract_transf_matrix[1][1]    0.020563 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012209 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011473 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ARG A 1 401 1 ARG ARG . 
C 3 MN A 1 402 1 MN MN . 
D 4 HOH A 1 501 13 HOH HOH . 
D 4 HOH A 2 502 34 HOH HOH . 
D 4 HOH A 3 503 49 HOH HOH . 
D 4 HOH A 4 504 65 HOH HOH . 
D 4 HOH A 5 505 79 HOH HOH . 
D 4 HOH A 6 506 40 HOH HOH . 
D 4 HOH A 7 507 28 HOH HOH . 
D 4 HOH A 8 508 3 HOH HOH . 
D 4 HOH A 9 509 130 HOH HOH . 
D 4 HOH A 10 510 128 HOH HOH . 
D 4 HOH A 11 511 38 HOH HOH . 
D 4 HOH A 12 512 108 HOH HOH . 
D 4 HOH A 13 513 69 HOH HOH . 
D 4 HOH A 14 514 11 HOH HOH . 
D 4 HOH A 15 515 93 HOH HOH . 
D 4 HOH A 16 516 56 HOH HOH . 
D 4 HOH A 17 517 37 HOH HOH . 
D 4 HOH A 18 518 17 HOH HOH . 
D 4 HOH A 19 519 46 HOH HOH . 
D 4 HOH A 20 520 87 HOH HOH . 
D 4 HOH A 21 521 57 HOH HOH . 
D 4 HOH A 22 522 109 HOH HOH . 
D 4 HOH A 23 523 2 HOH HOH . 
D 4 HOH A 24 524 25 HOH HOH . 
D 4 HOH A 25 525 100 HOH HOH . 
D 4 HOH A 26 526 94 HOH HOH . 
D 4 HOH A 27 527 12 HOH HOH . 
D 4 HOH A 28 528 64 HOH HOH . 
D 4 HOH A 29 529 78 HOH HOH . 
D 4 HOH A 30 530 68 HOH HOH . 
D 4 HOH A 31 531 19 HOH HOH . 
D 4 HOH A 32 532 15 HOH HOH . 
D 4 HOH A 33 533 22 HOH HOH . 
D 4 HOH A 34 534 41 HOH HOH . 
D 4 HOH A 35 535 14 HOH HOH . 
D 4 HOH A 36 536 50 HOH HOH . 
D 4 HOH A 37 537 91 HOH HOH . 
D 4 HOH A 38 538 47 HOH HOH . 
D 4 HOH A 39 539 21 HOH HOH . 
D 4 HOH A 40 540 4 HOH HOH . 
D 4 HOH A 41 541 29 HOH HOH . 
D 4 HOH A 42 542 63 HOH HOH . 
D 4 HOH A 43 543 55 HOH HOH . 
D 4 HOH A 44 544 84 HOH HOH . 
D 4 HOH A 45 545 1 HOH HOH . 
D 4 HOH A 46 546 31 HOH HOH . 
D 4 HOH A 47 547 59 HOH HOH . 
D 4 HOH A 48 548 39 HOH HOH . 
D 4 HOH A 49 549 26 HOH HOH . 
D 4 HOH A 50 550 60 HOH HOH . 
D 4 HOH A 51 551 83 HOH HOH . 
D 4 HOH A 52 552 10 HOH HOH . 
D 4 HOH A 53 553 42 HOH HOH . 
D 4 HOH A 54 554 96 HOH HOH . 
D 4 HOH A 55 555 18 HOH HOH . 
D 4 HOH A 56 556 67 HOH HOH . 
D 4 HOH A 57 557 76 HOH HOH . 
D 4 HOH A 58 558 27 HOH HOH . 
D 4 HOH A 59 559 20 HOH HOH . 
D 4 HOH A 60 560 7 HOH HOH . 
D 4 HOH A 61 561 16 HOH HOH . 
D 4 HOH A 62 562 86 HOH HOH . 
D 4 HOH A 63 563 52 HOH HOH . 
D 4 HOH A 64 564 112 HOH HOH . 
D 4 HOH A 65 565 124 HOH HOH . 
D 4 HOH A 66 566 103 HOH HOH . 
D 4 HOH A 67 567 9 HOH HOH . 
D 4 HOH A 68 568 88 HOH HOH . 
D 4 HOH A 69 569 30 HOH HOH . 
D 4 HOH A 70 570 32 HOH HOH . 
D 4 HOH A 71 571 6 HOH HOH . 
D 4 HOH A 72 572 24 HOH HOH . 
D 4 HOH A 73 573 23 HOH HOH . 
D 4 HOH A 74 574 121 HOH HOH . 
D 4 HOH A 75 575 35 HOH HOH . 
D 4 HOH A 76 576 123 HOH HOH . 
D 4 HOH A 77 577 110 HOH HOH . 
D 4 HOH A 78 578 58 HOH HOH . 
D 4 HOH A 79 579 51 HOH HOH . 
D 4 HOH A 80 580 104 HOH HOH . 
D 4 HOH A 81 581 48 HOH HOH . 
D 4 HOH A 82 582 74 HOH HOH . 
D 4 HOH A 83 583 44 HOH HOH . 
D 4 HOH A 84 584 36 HOH HOH . 
D 4 HOH A 85 585 66 HOH HOH . 
D 4 HOH A 86 586 53 HOH HOH . 
D 4 HOH A 87 587 81 HOH HOH . 
D 4 HOH A 88 588 127 HOH HOH . 
D 4 HOH A 89 589 73 HOH HOH . 
D 4 HOH A 90 590 62 HOH HOH . 
D 4 HOH A 91 591 129 HOH HOH . 
D 4 HOH A 92 592 85 HOH HOH . 
D 4 HOH A 93 593 77 HOH HOH . 
D 4 HOH A 94 594 101 HOH HOH . 
D 4 HOH A 95 595 95 HOH HOH . 
D 4 HOH A 96 596 43 HOH HOH . 
D 4 HOH A 97 597 8 HOH HOH . 
D 4 HOH A 98 598 61 HOH HOH . 
D 4 HOH A 99 599 125 HOH HOH . 
D 4 HOH A 100 600 111 HOH HOH . 
D 4 HOH A 101 601 89 HOH HOH . 
D 4 HOH A 102 602 99 HOH HOH . 
D 4 HOH A 103 603 102 HOH HOH . 
D 4 HOH A 104 604 119 HOH HOH . 
D 4 HOH A 105 605 92 HOH HOH . 
D 4 HOH A 106 606 105 HOH HOH . 
D 4 HOH A 107 607 80 HOH HOH . 
D 4 HOH A 108 608 70 HOH HOH . 
D 4 HOH A 109 609 107 HOH HOH . 
D 4 HOH A 110 610 98 HOH HOH . 
D 4 HOH A 111 611 134 HOH HOH . 
D 4 HOH A 112 612 72 HOH HOH . 
D 4 HOH A 113 613 131 HOH HOH . 
D 4 HOH A 114 614 82 HOH HOH . 
D 4 HOH A 115 615 115 HOH HOH . 
D 4 HOH A 116 616 126 HOH HOH . 
D 4 HOH A 117 617 120 HOH HOH . 
D 4 HOH A 118 618 133 HOH HOH . 
D 4 HOH A 119 619 118 HOH HOH . 
D 4 HOH A 120 620 97 HOH HOH . 
D 4 HOH A 121 621 122 HOH HOH . 
D 4 HOH A 122 622 113 HOH HOH . 
D 4 HOH A 123 623 106 HOH HOH . 
D 4 HOH A 124 624 135 HOH HOH . 
D 4 HOH A 125 625 116 HOH HOH . 
D 4 HOH A 126 626 33 HOH HOH . 
D 4 HOH A 127 627 114 HOH HOH . 
D 4 HOH A 128 628 71 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ARG . . . B 2 8.847 -5.95 5.418 1 32.46 ? N ARG 401 A 1 
HETATM 2 C CA ARG . . . B 2 7.659 -6.418 4.712 1 30.87 ? CA ARG 401 A 1 
HETATM 3 C C ARG . . . B 2 7.845 -7.881 4.321 1 33.01 ? C ARG 401 A 1 
HETATM 4 O O ARG . . . B 2 6.925 -8.545 3.843 1 31.06 ? O ARG 401 A 1 
HETATM 5 C CB ARG . . . B 2 7.365 -5.541 3.483 1 28.77 ? CB ARG 401 A 1 
HETATM 6 C CG ARG . . . B 2 6.963 -4.086 3.83 1 27.65 ? CG ARG 401 A 1 
HETATM 7 C CD ARG . . . B 2 5.458 -3.94 4.152 1 29.44 ? CD ARG 401 A 1 
HETATM 8 N NE ARG . . . B 2 5.1 -4.433 5.486 1 26.79 ? NE ARG 401 A 1 
HETATM 9 C CZ ARG . . . B 2 3.858 -4.48 5.952 1 26.66 ? CZ ARG 401 A 1 
HETATM 10 N NH1 ARG . . . B 2 3.616 -4.949 7.162 1 26.85 ? NH1 ARG 401 A 1 
HETATM 11 N NH2 ARG . . . B 2 2.856 -4.072 5.192 1 38.04 ? NH2 ARG 401 A 1 
HETATM 12 O OXT ARG . . . B 2 8.928 -8.443 4.507 1 36.26 ? OXT ARG 401 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           12 
#