data_5V39 # _model_server_result.job_id KDnovSecscp4b8z7EIqVhg _model_server_result.datetime_utc '2024-11-22 20:42:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v39 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5V39 # _exptl.entry_id 5V39 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.642 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3-{4-[(2S)-2-hydroxy-3,3-dimethylbutoxy]-3-methylphenyl}pentan-3-yl)-3-methyl-N-(1H-tetrazol-5-yl)thiophene-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V39 _cell.length_a 44 _cell.length_b 52.67 _cell.length_c 105.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V39 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H35 N5 O3 S' _chem_comp.formula_weight 485.642 _chem_comp.id 8VM _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3-{4-[(2S)-2-hydroxy-3,3-dimethylbutoxy]-3-methylphenyl}pentan-3-yl)-3-methyl-N-(1H-tetrazol-5-yl)thiophene-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C33 8VM sing 1 n n N10 N11 8VM sing 2 n y N10 C9 8VM sing 3 n y C30 C27 8VM sing 4 n n N11 N12 8VM doub 5 n y C22 C20 8VM sing 6 n n O26 C25 8VM sing 7 n n O7 C6 8VM doub 8 n n C33 C15 8VM sing 9 n n C9 N8 8VM sing 10 n n C9 N13 8VM doub 11 n y N12 N13 8VM sing 12 n y N8 C6 8VM sing 13 n n C6 C4 8VM sing 14 n n S5 C4 8VM sing 15 n y S5 C1 8VM sing 16 n y C25 C27 8VM sing 17 n n C25 C24 8VM sing 18 n n C20 C21 8VM doub 19 n y C20 C19 8VM sing 20 n y C21 C16 8VM sing 21 n y C4 C3 8VM doub 22 n y C27 C29 8VM sing 23 n n C27 C28 8VM sing 24 n n O23 C19 8VM sing 25 n n O23 C24 8VM sing 26 n n C16 C15 8VM sing 27 n n C16 C17 8VM doub 28 n y C15 C1 8VM sing 29 n n C15 C31 8VM sing 30 n n C19 C18 8VM doub 31 n y C1 C2 8VM doub 32 n y C3 C2 8VM sing 33 n y C3 C14 8VM sing 34 n n C17 C18 8VM sing 35 n y C31 C32 8VM sing 36 n n C2 H1 8VM sing 37 n n C17 H2 8VM sing 38 n n C18 H3 8VM sing 39 n n C21 H4 8VM sing 40 n n C22 H5 8VM sing 41 n n C22 H6 8VM sing 42 n n C22 H7 8VM sing 43 n n C14 H8 8VM sing 44 n n C14 H9 8VM sing 45 n n C14 H10 8VM sing 46 n n C32 H11 8VM sing 47 n n C32 H12 8VM sing 48 n n C32 H13 8VM sing 49 n n C34 H14 8VM sing 50 n n C34 H15 8VM sing 51 n n C34 H16 8VM sing 52 n n C28 H17 8VM sing 53 n n C28 H18 8VM sing 54 n n C28 H19 8VM sing 55 n n C29 H20 8VM sing 56 n n C29 H21 8VM sing 57 n n C29 H22 8VM sing 58 n n C30 H23 8VM sing 59 n n C30 H24 8VM sing 60 n n C30 H25 8VM sing 61 n n C31 H26 8VM sing 62 n n C31 H27 8VM sing 63 n n C33 H28 8VM sing 64 n n C33 H29 8VM sing 65 n n C24 H30 8VM sing 66 n n C24 H31 8VM sing 67 n n C25 H32 8VM sing 68 n n N10 H33 8VM sing 69 n n N8 H34 8VM sing 70 n n O26 H35 8VM sing 71 n n # _atom_sites.entry_id 5V39 _atom_sites.fract_transf_matrix[1][1] 0.022727 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8VM A 1 501 1 8VM SX1 . C 3 HOH A 1 601 18 HOH HOH . C 3 HOH A 2 602 69 HOH HOH . C 3 HOH A 3 603 81 HOH HOH . C 3 HOH A 4 604 24 HOH HOH . C 3 HOH A 5 605 1 HOH HOH . C 3 HOH A 6 606 39 HOH HOH . C 3 HOH A 7 607 41 HOH HOH . C 3 HOH A 8 608 95 HOH HOH . C 3 HOH A 9 609 94 HOH HOH . C 3 HOH A 10 610 22 HOH HOH . C 3 HOH A 11 611 85 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 38 HOH HOH . C 3 HOH A 14 614 83 HOH HOH . C 3 HOH A 15 615 9 HOH HOH . C 3 HOH A 16 616 4 HOH HOH . C 3 HOH A 17 617 26 HOH HOH . C 3 HOH A 18 618 75 HOH HOH . C 3 HOH A 19 619 5 HOH HOH . C 3 HOH A 20 620 17 HOH HOH . C 3 HOH A 21 621 8 HOH HOH . C 3 HOH A 22 622 11 HOH HOH . C 3 HOH A 23 623 6 HOH HOH . C 3 HOH A 24 624 3 HOH HOH . C 3 HOH A 25 625 46 HOH HOH . C 3 HOH A 26 626 15 HOH HOH . C 3 HOH A 27 627 74 HOH HOH . C 3 HOH A 28 628 50 HOH HOH . C 3 HOH A 29 629 35 HOH HOH . C 3 HOH A 30 630 2 HOH HOH . C 3 HOH A 31 631 48 HOH HOH . C 3 HOH A 32 632 16 HOH HOH . C 3 HOH A 33 633 82 HOH HOH . C 3 HOH A 34 634 25 HOH HOH . C 3 HOH A 35 635 76 HOH HOH . C 3 HOH A 36 636 53 HOH HOH . C 3 HOH A 37 637 93 HOH HOH . C 3 HOH A 38 638 59 HOH HOH . C 3 HOH A 39 639 23 HOH HOH . C 3 HOH A 40 640 20 HOH HOH . C 3 HOH A 41 641 92 HOH HOH . C 3 HOH A 42 642 44 HOH HOH . C 3 HOH A 43 643 70 HOH HOH . C 3 HOH A 44 644 51 HOH HOH . C 3 HOH A 45 645 30 HOH HOH . C 3 HOH A 46 646 31 HOH HOH . C 3 HOH A 47 647 14 HOH HOH . C 3 HOH A 48 648 21 HOH HOH . C 3 HOH A 49 649 71 HOH HOH . C 3 HOH A 50 650 78 HOH HOH . C 3 HOH A 51 651 49 HOH HOH . C 3 HOH A 52 652 62 HOH HOH . C 3 HOH A 53 653 90 HOH HOH . C 3 HOH A 54 654 58 HOH HOH . C 3 HOH A 55 655 68 HOH HOH . C 3 HOH A 56 656 40 HOH HOH . C 3 HOH A 57 657 34 HOH HOH . C 3 HOH A 58 658 36 HOH HOH . C 3 HOH A 59 659 47 HOH HOH . C 3 HOH A 60 660 65 HOH HOH . C 3 HOH A 61 661 7 HOH HOH . C 3 HOH A 62 662 66 HOH HOH . C 3 HOH A 63 663 91 HOH HOH . C 3 HOH A 64 664 55 HOH HOH . C 3 HOH A 65 665 61 HOH HOH . C 3 HOH A 66 666 84 HOH HOH . C 3 HOH A 67 667 37 HOH HOH . C 3 HOH A 68 668 77 HOH HOH . C 3 HOH A 69 669 67 HOH HOH . C 3 HOH A 70 670 64 HOH HOH . C 3 HOH A 71 671 79 HOH HOH . C 3 HOH A 72 672 32 HOH HOH . C 3 HOH A 73 673 57 HOH HOH . C 3 HOH A 74 674 10 HOH HOH . C 3 HOH A 75 675 28 HOH HOH . C 3 HOH A 76 676 29 HOH HOH . C 3 HOH A 77 677 19 HOH HOH . C 3 HOH A 78 678 89 HOH HOH . C 3 HOH A 79 679 27 HOH HOH . C 3 HOH A 80 680 42 HOH HOH . C 3 HOH A 81 681 73 HOH HOH . C 3 HOH A 82 682 63 HOH HOH . C 3 HOH A 83 683 33 HOH HOH . C 3 HOH A 84 684 60 HOH HOH . C 3 HOH A 85 685 56 HOH HOH . C 3 HOH A 86 686 43 HOH HOH . C 3 HOH A 87 687 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 8VM . . . B 2 -9.185 -5.329 25.19 1 25.68 ? C6 8VM 501 A 1 HETATM 2 C C1 8VM . . . B 2 -9.059 -9.099 26.081 1 16.04 ? C1 8VM 501 A 1 HETATM 3 C C4 8VM . . . B 2 -8.868 -6.637 25.682 1 20.45 ? C4 8VM 501 A 1 HETATM 4 C C3 8VM . . . B 2 -7.867 -7.102 26.514 1 18.77 ? C3 8VM 501 A 1 HETATM 5 C C2 8VM . . . B 2 -7.989 -8.496 26.698 1 13.89 ? C2 8VM 501 A 1 HETATM 6 C C17 8VM . . . B 2 -11.897 -10.313 26.706 1 16.49 ? C17 8VM 501 A 1 HETATM 7 C C18 8VM . . . B 2 -13.187 -10.813 26.707 1 18.23 ? C18 8VM 501 A 1 HETATM 8 C C21 8VM . . . B 2 -11.206 -12.176 25.407 1 17.89 ? C21 8VM 501 A 1 HETATM 9 C C16 8VM . . . B 2 -10.878 -10.987 26.045 1 17.84 ? C16 8VM 501 A 1 HETATM 10 C C20 8VM . . . B 2 -12.477 -12.699 25.406 1 20.71 ? C20 8VM 501 A 1 HETATM 11 C C19 8VM . . . B 2 -13.477 -12.005 26.062 1 21.93 ? C19 8VM 501 A 1 HETATM 12 C C9 8VM . . . B 2 -8.21 -3.174 24.925 1 31.03 ? C9 8VM 501 A 1 HETATM 13 C C22 8VM . . . B 2 -12.724 -13.982 24.669 1 20.51 ? C22 8VM 501 A 1 HETATM 14 C C14 8VM . . . B 2 -6.767 -6.332 27.136 1 20.13 ? C14 8VM 501 A 1 HETATM 15 C C32 8VM . . . B 2 -9.283 -10.8 28.644 1 15.33 ? C32 8VM 501 A 1 HETATM 16 C C34 8VM . . . B 2 -8.8 -10.593 23.526 1 13.65 ? C34 8VM 501 A 1 HETATM 17 C C28 8VM . . . B 2 -18.08 -9.943 26.706 1 20.37 ? C28 8VM 501 A 1 HETATM 18 C C29 8VM . . . B 2 -19.178 -12.103 26.335 1 18.11 ? C29 8VM 501 A 1 HETATM 19 C C30 8VM . . . B 2 -18.766 -10.586 24.46 1 19.25 ? C30 8VM 501 A 1 HETATM 20 C C31 8VM . . . B 2 -8.802 -11.266 27.28 1 15.72 ? C31 8VM 501 A 1 HETATM 21 C C33 8VM . . . B 2 -8.641 -11.211 24.897 1 14.25 ? C33 8VM 501 A 1 HETATM 22 C C24 8VM . . . B 2 -15.808 -11.806 26.51 1 26.24 ? C24 8VM 501 A 1 HETATM 23 C C25 8VM . . . B 2 -16.837 -11.721 25.393 1 22.9 ? C25 8VM 501 A 1 HETATM 24 C C15 8VM . . . B 2 -9.416 -10.555 26.059 1 16.95 ? C15 8VM 501 A 1 HETATM 25 C C27 8VM . . . B 2 -18.194 -11.112 25.753 1 20.45 ? C27 8VM 501 A 1 HETATM 26 N N10 8VM . . . B 2 -9.173 -2.461 24.377 1 32.87 ? N10 8VM 501 A 1 HETATM 27 N N11 8VM . . . B 2 -8.767 -1.161 24.481 1 32.22 ? N11 8VM 501 A 1 HETATM 28 N N12 8VM . . . B 2 -7.583 -1.086 25.069 1 31.92 ? N12 8VM 501 A 1 HETATM 29 N N13 8VM . . . B 2 -7.222 -2.34 25.354 1 30.58 ? N13 8VM 501 A 1 HETATM 30 N N8 8VM . . . B 2 -8.079 -4.532 25.085 1 26.13 ? N8 8VM 501 A 1 HETATM 31 O O7 8VM . . . B 2 -10.322 -5.011 24.853 1 30.25 ? O7 8VM 501 A 1 HETATM 32 O O26 8VM . . . B 2 -17.01 -13.011 24.816 1 21.64 ? O26 8VM 501 A 1 HETATM 33 O O23 8VM . . . B 2 -14.734 -12.604 26.034 1 26.76 ? O23 8VM 501 A 1 HETATM 34 S S5 8VM . . . B 2 -9.929 -7.902 25.209 1 19.84 ? S5 8VM 501 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 34 #