data_5V3C # _model_server_result.job_id ZICuRlnTuJWCRvD07jEg5Q _model_server_result.datetime_utc '2024-11-24 03:51:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v3c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5V3C # _exptl.entry_id 5V3C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.21 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.59 _cell.angle_gamma 90 _cell.entry_id 5V3C _cell.length_a 88.746 _cell.length_b 63.739 _cell.length_c 70.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V3C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -6.365271 0 140.716108 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 309 A CYS 318 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A SG CYS 311 A CYS 320 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 A SG CYS 314 A CYS 323 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc4 A ND1 HIS 340 A HIS 349 1_555 B ZN ZN . A ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? # _chem_comp.formula 'C8 H15 N O2' _chem_comp.formula_weight 157.21 _chem_comp.id AMH _chem_comp.mon_nstd_flag . _chem_comp.name 'TRANS-4-AMINOMETHYLCYCLOHEXANE-1-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AMH sing 13 n n C1 C6 AMH sing 14 n n C1 C8 AMH sing 15 n n C1 H1 AMH sing 16 n n C2 C3 AMH sing 17 n n C2 H21 AMH sing 18 n n C2 H22 AMH sing 19 n n C3 C4 AMH sing 20 n n C3 H31 AMH sing 21 n n C3 H32 AMH sing 22 n n C4 C5 AMH sing 23 n n C4 C7 AMH sing 24 n n C4 H4 AMH sing 25 n n C5 C6 AMH sing 26 n n C5 H51 AMH sing 27 n n C5 H52 AMH sing 28 n n C6 H61 AMH sing 29 n n C6 H62 AMH sing 30 n n C7 N AMH sing 31 n n C7 H71 AMH sing 32 n n C7 H72 AMH sing 33 n n C8 O1 AMH doub 34 n n C8 O2 AMH sing 35 n n N HN1 AMH sing 36 n n N HN2 AMH sing 37 n n O2 HO2 AMH sing 38 n n # _atom_sites.entry_id 5V3C _atom_sites.fract_transf_matrix[1][1] 0.011268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00051 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 401 1 ZN ZN . C 3 AMH A 1 402 1 AMH XXX . D 4 PEG A 1 403 1 PEG PEG . E 4 PEG A 1 404 2 PEG PEG . F 5 DMS A 1 405 4 DMS DMS . G 5 DMS A 1 406 6 DMS DMS . H 6 PGE A 1 407 1 PGE PGE . I 7 HOH A 1 501 94 HOH HOH . I 7 HOH A 2 502 205 HOH HOH . I 7 HOH A 3 503 86 HOH HOH . I 7 HOH A 4 504 79 HOH HOH . I 7 HOH A 5 505 159 HOH HOH . I 7 HOH A 6 506 80 HOH HOH . I 7 HOH A 7 507 44 HOH HOH . I 7 HOH A 8 508 43 HOH HOH . I 7 HOH A 9 509 190 HOH HOH . I 7 HOH A 10 510 91 HOH HOH . I 7 HOH A 11 511 158 HOH HOH . I 7 HOH A 12 512 164 HOH HOH . I 7 HOH A 13 513 28 HOH HOH . I 7 HOH A 14 514 119 HOH HOH . I 7 HOH A 15 515 157 HOH HOH . I 7 HOH A 16 516 152 HOH HOH . I 7 HOH A 17 517 216 HOH HOH . I 7 HOH A 18 518 67 HOH HOH . I 7 HOH A 19 519 88 HOH HOH . I 7 HOH A 20 520 215 HOH HOH . I 7 HOH A 21 521 81 HOH HOH . I 7 HOH A 22 522 47 HOH HOH . I 7 HOH A 23 523 235 HOH HOH . I 7 HOH A 24 524 57 HOH HOH . I 7 HOH A 25 525 2 HOH HOH . I 7 HOH A 26 526 141 HOH HOH . I 7 HOH A 27 527 16 HOH HOH . I 7 HOH A 28 528 39 HOH HOH . I 7 HOH A 29 529 54 HOH HOH . I 7 HOH A 30 530 98 HOH HOH . I 7 HOH A 31 531 19 HOH HOH . I 7 HOH A 32 532 53 HOH HOH . I 7 HOH A 33 533 55 HOH HOH . I 7 HOH A 34 534 178 HOH HOH . I 7 HOH A 35 535 255 HOH HOH . I 7 HOH A 36 536 125 HOH HOH . I 7 HOH A 37 537 105 HOH HOH . I 7 HOH A 38 538 15 HOH HOH . I 7 HOH A 39 539 163 HOH HOH . I 7 HOH A 40 540 173 HOH HOH . I 7 HOH A 41 541 247 HOH HOH . I 7 HOH A 42 542 74 HOH HOH . I 7 HOH A 43 543 128 HOH HOH . I 7 HOH A 44 544 117 HOH HOH . I 7 HOH A 45 545 32 HOH HOH . I 7 HOH A 46 546 95 HOH HOH . I 7 HOH A 47 547 202 HOH HOH . I 7 HOH A 48 548 90 HOH HOH . I 7 HOH A 49 549 23 HOH HOH . I 7 HOH A 50 550 41 HOH HOH . I 7 HOH A 51 551 38 HOH HOH . I 7 HOH A 52 552 144 HOH HOH . I 7 HOH A 53 553 135 HOH HOH . I 7 HOH A 54 554 21 HOH HOH . I 7 HOH A 55 555 138 HOH HOH . I 7 HOH A 56 556 254 HOH HOH . I 7 HOH A 57 557 180 HOH HOH . I 7 HOH A 58 558 64 HOH HOH . I 7 HOH A 59 559 181 HOH HOH . I 7 HOH A 60 560 82 HOH HOH . I 7 HOH A 61 561 179 HOH HOH . I 7 HOH A 62 562 108 HOH HOH . I 7 HOH A 63 563 140 HOH HOH . I 7 HOH A 64 564 24 HOH HOH . I 7 HOH A 65 565 106 HOH HOH . I 7 HOH A 66 566 34 HOH HOH . I 7 HOH A 67 567 22 HOH HOH . I 7 HOH A 68 568 56 HOH HOH . I 7 HOH A 69 569 136 HOH HOH . I 7 HOH A 70 570 120 HOH HOH . I 7 HOH A 71 571 101 HOH HOH . I 7 HOH A 72 572 228 HOH HOH . I 7 HOH A 73 573 18 HOH HOH . I 7 HOH A 74 574 93 HOH HOH . I 7 HOH A 75 575 115 HOH HOH . I 7 HOH A 76 576 73 HOH HOH . I 7 HOH A 77 577 75 HOH HOH . I 7 HOH A 78 578 10 HOH HOH . I 7 HOH A 79 579 63 HOH HOH . I 7 HOH A 80 580 185 HOH HOH . I 7 HOH A 81 581 7 HOH HOH . I 7 HOH A 82 582 204 HOH HOH . I 7 HOH A 83 583 49 HOH HOH . I 7 HOH A 84 584 27 HOH HOH . I 7 HOH A 85 585 123 HOH HOH . I 7 HOH A 86 586 40 HOH HOH . I 7 HOH A 87 587 33 HOH HOH . I 7 HOH A 88 588 224 HOH HOH . I 7 HOH A 89 589 26 HOH HOH . I 7 HOH A 90 590 203 HOH HOH . I 7 HOH A 91 591 85 HOH HOH . I 7 HOH A 92 592 8 HOH HOH . I 7 HOH A 93 593 29 HOH HOH . I 7 HOH A 94 594 5 HOH HOH . I 7 HOH A 95 595 223 HOH HOH . I 7 HOH A 96 596 13 HOH HOH . I 7 HOH A 97 597 58 HOH HOH . I 7 HOH A 98 598 42 HOH HOH . I 7 HOH A 99 599 151 HOH HOH . I 7 HOH A 100 600 83 HOH HOH . I 7 HOH A 101 601 9 HOH HOH . I 7 HOH A 102 602 11 HOH HOH . I 7 HOH A 103 603 165 HOH HOH . I 7 HOH A 104 604 45 HOH HOH . I 7 HOH A 105 605 31 HOH HOH . I 7 HOH A 106 606 68 HOH HOH . I 7 HOH A 107 607 256 HOH HOH . I 7 HOH A 108 608 134 HOH HOH . I 7 HOH A 109 609 48 HOH HOH . I 7 HOH A 110 610 51 HOH HOH . I 7 HOH A 111 611 60 HOH HOH . I 7 HOH A 112 612 182 HOH HOH . I 7 HOH A 113 613 148 HOH HOH . I 7 HOH A 114 614 244 HOH HOH . I 7 HOH A 115 615 131 HOH HOH . I 7 HOH A 116 616 96 HOH HOH . I 7 HOH A 117 617 217 HOH HOH . I 7 HOH A 118 618 126 HOH HOH . I 7 HOH A 119 619 37 HOH HOH . I 7 HOH A 120 620 84 HOH HOH . I 7 HOH A 121 621 137 HOH HOH . I 7 HOH A 122 622 30 HOH HOH . I 7 HOH A 123 623 225 HOH HOH . I 7 HOH A 124 624 87 HOH HOH . I 7 HOH A 125 625 160 HOH HOH . I 7 HOH A 126 626 77 HOH HOH . I 7 HOH A 127 627 46 HOH HOH . I 7 HOH A 128 628 76 HOH HOH . I 7 HOH A 129 629 175 HOH HOH . I 7 HOH A 130 630 156 HOH HOH . I 7 HOH A 131 631 100 HOH HOH . I 7 HOH A 132 632 129 HOH HOH . I 7 HOH A 133 633 69 HOH HOH . I 7 HOH A 134 634 113 HOH HOH . I 7 HOH A 135 635 65 HOH HOH . I 7 HOH A 136 636 97 HOH HOH . I 7 HOH A 137 637 231 HOH HOH . I 7 HOH A 138 638 172 HOH HOH . I 7 HOH A 139 639 20 HOH HOH . I 7 HOH A 140 640 78 HOH HOH . I 7 HOH A 141 641 36 HOH HOH . I 7 HOH A 142 642 191 HOH HOH . I 7 HOH A 143 643 121 HOH HOH . I 7 HOH A 144 644 25 HOH HOH . I 7 HOH A 145 645 177 HOH HOH . I 7 HOH A 146 646 230 HOH HOH . I 7 HOH A 147 647 201 HOH HOH . I 7 HOH A 148 648 155 HOH HOH . I 7 HOH A 149 649 112 HOH HOH . I 7 HOH A 150 650 104 HOH HOH . I 7 HOH A 151 651 52 HOH HOH . I 7 HOH A 152 652 184 HOH HOH . I 7 HOH A 153 653 99 HOH HOH . I 7 HOH A 154 654 166 HOH HOH . I 7 HOH A 155 655 212 HOH HOH . I 7 HOH A 156 656 218 HOH HOH . I 7 HOH A 157 657 200 HOH HOH . I 7 HOH A 158 658 167 HOH HOH . I 7 HOH A 159 659 153 HOH HOH . I 7 HOH A 160 660 35 HOH HOH . I 7 HOH A 161 661 143 HOH HOH . I 7 HOH A 162 662 127 HOH HOH . I 7 HOH A 163 663 66 HOH HOH . I 7 HOH A 164 664 89 HOH HOH . I 7 HOH A 165 665 154 HOH HOH . I 7 HOH A 166 666 196 HOH HOH . I 7 HOH A 167 667 195 HOH HOH . I 7 HOH A 168 668 241 HOH HOH . I 7 HOH A 169 669 213 HOH HOH . I 7 HOH A 170 670 132 HOH HOH . I 7 HOH A 171 671 198 HOH HOH . I 7 HOH A 172 672 162 HOH HOH . I 7 HOH A 173 673 170 HOH HOH . I 7 HOH A 174 674 237 HOH HOH . I 7 HOH A 175 675 133 HOH HOH . I 7 HOH A 176 676 70 HOH HOH . I 7 HOH A 177 677 176 HOH HOH . I 7 HOH A 178 678 109 HOH HOH . I 7 HOH A 179 679 17 HOH HOH . I 7 HOH A 180 680 187 HOH HOH . I 7 HOH A 181 681 161 HOH HOH . I 7 HOH A 182 682 243 HOH HOH . I 7 HOH A 183 683 3 HOH HOH . I 7 HOH A 184 684 188 HOH HOH . I 7 HOH A 185 685 102 HOH HOH . I 7 HOH A 186 686 257 HOH HOH . I 7 HOH A 187 687 183 HOH HOH . I 7 HOH A 188 688 171 HOH HOH . I 7 HOH A 189 689 72 HOH HOH . I 7 HOH A 190 690 234 HOH HOH . I 7 HOH A 191 691 220 HOH HOH . I 7 HOH A 192 692 239 HOH HOH . I 7 HOH A 193 693 62 HOH HOH . I 7 HOH A 194 694 208 HOH HOH . I 7 HOH A 195 695 259 HOH HOH . I 7 HOH A 196 696 240 HOH HOH . I 7 HOH A 197 697 186 HOH HOH . I 7 HOH A 198 698 193 HOH HOH . I 7 HOH A 199 699 207 HOH HOH . I 7 HOH A 200 700 139 HOH HOH . I 7 HOH A 201 701 221 HOH HOH . I 7 HOH A 202 702 227 HOH HOH . I 7 HOH A 203 703 242 HOH HOH . I 7 HOH A 204 704 192 HOH HOH . I 7 HOH A 205 705 214 HOH HOH . I 7 HOH A 206 706 211 HOH HOH . I 7 HOH A 207 707 145 HOH HOH . I 7 HOH A 208 708 258 HOH HOH . I 7 HOH A 209 709 233 HOH HOH . I 7 HOH A 210 710 50 HOH HOH . I 7 HOH A 211 711 169 HOH HOH . I 7 HOH A 212 712 194 HOH HOH . I 7 HOH A 213 713 107 HOH HOH . I 7 HOH A 214 714 245 HOH HOH . I 7 HOH A 215 715 189 HOH HOH . I 7 HOH A 216 716 253 HOH HOH . I 7 HOH A 217 717 232 HOH HOH . I 7 HOH A 218 718 209 HOH HOH . I 7 HOH A 219 719 210 HOH HOH . I 7 HOH A 220 720 103 HOH HOH . I 7 HOH A 221 721 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AMH . . . C 3 14.234 23.851 91.921 1 24.5 ? C1 AMH 402 A 1 HETATM 2 C C2 AMH . . . C 3 15.03 25.036 91.351 1 25.62 ? C2 AMH 402 A 1 HETATM 3 C C3 AMH . . . C 3 14.911 25.093 89.824 1 26.63 ? C3 AMH 402 A 1 HETATM 4 C C4 AMH . . . C 3 15.375 23.803 89.161 1 27.09 ? C4 AMH 402 A 1 HETATM 5 C C5 AMH . . . C 3 14.592 22.637 89.744 1 25.7 ? C5 AMH 402 A 1 HETATM 6 C C6 AMH . . . C 3 14.722 22.557 91.263 1 24.49 ? C6 AMH 402 A 1 HETATM 7 C C7 AMH . . . C 3 15.137 23.84 87.632 1 29.21 ? C7 AMH 402 A 1 HETATM 8 C C8 AMH . . . C 3 14.356 23.747 93.44 1 25.88 ? C8 AMH 402 A 1 HETATM 9 N N AMH . . . C 3 16.12 24.776 87.031 1 32 1 N AMH 402 A 1 HETATM 10 O O1 AMH . . . C 3 15.504 23.897 93.917 1 26.6 ? O1 AMH 402 A 1 HETATM 11 O O2 AMH . . . C 3 13.319 23.522 94.112 1 26.6 -1 O2 AMH 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 11 #