data_5V3H
#
_model_server_result.job_id            3s5ZYVh8p52NXvdyVNqMLw 
_model_server_result.datetime_utc      '2024-11-24 19:24:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v3h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":510}' 
#
_entry.id    5V3H 
#
_exptl.entry_id    5V3H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          114.22 
_cell.angle_gamma         90 
_cell.entry_id            5V3H 
_cell.length_a            157.56 
_cell.length_b            54.775 
_cell.length_c            79.702 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V3H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 K N N 
? 7 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 63 A CYS 52 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc2 A SG CYS 66 A CYS 55 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc3 A SG CYS 76 A CYS 65 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc4 A SG CYS 79 A CYS 68 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? 
metalc ? metalc5 A SG CYS 85 A CYS 74 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc6 A SG CYS 89 A CYS 78 1_555 D ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc7 A NE2 HIS 97 A HIS 86 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc8 A SG CYS 101 A CYS 90 1_555 E ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc9 A SG CYS 220 A CYS 209 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc10 A SG CYS 273 A CYS 262 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc11 A SG CYS 275 A CYS 264 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc12 A SG CYS 278 A CYS 267 1_555 C ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 193 n n 
C1 C2 GOL sing 194 n n 
C1 H11 GOL sing 195 n n 
C1 H12 GOL sing 196 n n 
O1 HO1 GOL sing 197 n n 
C2 O2 GOL sing 198 n n 
C2 C3 GOL sing 199 n n 
C2 H2 GOL sing 200 n n 
O2 HO2 GOL sing 201 n n 
C3 O3 GOL sing 202 n n 
C3 H31 GOL sing 203 n n 
C3 H32 GOL sing 204 n n 
O3 HO3 GOL sing 205 n n 
#
_atom_sites.entry_id                     5V3H 
_atom_sites.fract_transf_matrix[1][1]    0.006347 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002855 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018257 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013757 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAM A 1 501 1 SAM SAM . 
C 3 ZN A 1 502 1 ZN ZN . 
D 3 ZN A 1 503 2 ZN ZN . 
E 3 ZN A 1 504 3 ZN ZN . 
F 4 8WG A 1 505 1 8WG EPZ . 
G 4 8WG A 1 506 2 8WG EPZ . 
H 5 PEG A 1 507 1 PEG PEG . 
I 5 PEG A 1 508 2 PEG PEG . 
J 6 EDO A 1 509 3 EDO EDO . 
K 7 GOL A 1 510 1 GOL GOL . 
L 7 GOL A 1 511 2 GOL GOL . 
M 8 HOH A 1 601 74 HOH HOH . 
M 8 HOH A 2 602 1 HOH HOH . 
M 8 HOH A 3 603 96 HOH HOH . 
M 8 HOH A 4 604 105 HOH HOH . 
M 8 HOH A 5 605 43 HOH HOH . 
M 8 HOH A 6 606 110 HOH HOH . 
M 8 HOH A 7 607 23 HOH HOH . 
M 8 HOH A 8 608 16 HOH HOH . 
M 8 HOH A 9 609 13 HOH HOH . 
M 8 HOH A 10 610 68 HOH HOH . 
M 8 HOH A 11 611 115 HOH HOH . 
M 8 HOH A 12 612 93 HOH HOH . 
M 8 HOH A 13 613 41 HOH HOH . 
M 8 HOH A 14 614 129 HOH HOH . 
M 8 HOH A 15 615 106 HOH HOH . 
M 8 HOH A 16 616 114 HOH HOH . 
M 8 HOH A 17 617 73 HOH HOH . 
M 8 HOH A 18 618 11 HOH HOH . 
M 8 HOH A 19 619 17 HOH HOH . 
M 8 HOH A 20 620 33 HOH HOH . 
M 8 HOH A 21 621 6 HOH HOH . 
M 8 HOH A 22 622 15 HOH HOH . 
M 8 HOH A 23 623 85 HOH HOH . 
M 8 HOH A 24 624 51 HOH HOH . 
M 8 HOH A 25 625 80 HOH HOH . 
M 8 HOH A 26 626 4 HOH HOH . 
M 8 HOH A 27 627 22 HOH HOH . 
M 8 HOH A 28 628 52 HOH HOH . 
M 8 HOH A 29 629 10 HOH HOH . 
M 8 HOH A 30 630 25 HOH HOH . 
M 8 HOH A 31 631 39 HOH HOH . 
M 8 HOH A 32 632 18 HOH HOH . 
M 8 HOH A 33 633 5 HOH HOH . 
M 8 HOH A 34 634 77 HOH HOH . 
M 8 HOH A 35 635 29 HOH HOH . 
M 8 HOH A 36 636 59 HOH HOH . 
M 8 HOH A 37 637 53 HOH HOH . 
M 8 HOH A 38 638 48 HOH HOH . 
M 8 HOH A 39 639 32 HOH HOH . 
M 8 HOH A 40 640 55 HOH HOH . 
M 8 HOH A 41 641 66 HOH HOH . 
M 8 HOH A 42 642 58 HOH HOH . 
M 8 HOH A 43 643 30 HOH HOH . 
M 8 HOH A 44 644 79 HOH HOH . 
M 8 HOH A 45 645 37 HOH HOH . 
M 8 HOH A 46 646 14 HOH HOH . 
M 8 HOH A 47 647 2 HOH HOH . 
M 8 HOH A 48 648 83 HOH HOH . 
M 8 HOH A 49 649 8 HOH HOH . 
M 8 HOH A 50 650 71 HOH HOH . 
M 8 HOH A 51 651 119 HOH HOH . 
M 8 HOH A 52 652 81 HOH HOH . 
M 8 HOH A 53 653 98 HOH HOH . 
M 8 HOH A 54 654 12 HOH HOH . 
M 8 HOH A 55 655 95 HOH HOH . 
M 8 HOH A 56 656 126 HOH HOH . 
M 8 HOH A 57 657 40 HOH HOH . 
M 8 HOH A 58 658 94 HOH HOH . 
M 8 HOH A 59 659 122 HOH HOH . 
M 8 HOH A 60 660 24 HOH HOH . 
M 8 HOH A 61 661 19 HOH HOH . 
M 8 HOH A 62 662 102 HOH HOH . 
M 8 HOH A 63 663 118 HOH HOH . 
M 8 HOH A 64 664 50 HOH HOH . 
M 8 HOH A 65 665 63 HOH HOH . 
M 8 HOH A 66 666 113 HOH HOH . 
M 8 HOH A 67 667 46 HOH HOH . 
M 8 HOH A 68 668 125 HOH HOH . 
M 8 HOH A 69 669 107 HOH HOH . 
M 8 HOH A 70 670 60 HOH HOH . 
M 8 HOH A 71 671 86 HOH HOH . 
M 8 HOH A 72 672 3 HOH HOH . 
M 8 HOH A 73 673 111 HOH HOH . 
M 8 HOH A 74 674 75 HOH HOH . 
M 8 HOH A 75 675 67 HOH HOH . 
M 8 HOH A 76 676 127 HOH HOH . 
M 8 HOH A 77 677 20 HOH HOH . 
M 8 HOH A 78 678 21 HOH HOH . 
M 8 HOH A 79 679 26 HOH HOH . 
M 8 HOH A 80 680 56 HOH HOH . 
M 8 HOH A 81 681 7 HOH HOH . 
M 8 HOH A 82 682 45 HOH HOH . 
M 8 HOH A 83 683 57 HOH HOH . 
M 8 HOH A 84 684 44 HOH HOH . 
M 8 HOH A 85 685 84 HOH HOH . 
M 8 HOH A 86 686 61 HOH HOH . 
M 8 HOH A 87 687 34 HOH HOH . 
M 8 HOH A 88 688 78 HOH HOH . 
M 8 HOH A 89 689 128 HOH HOH . 
M 8 HOH A 90 690 35 HOH HOH . 
M 8 HOH A 91 691 36 HOH HOH . 
M 8 HOH A 92 692 116 HOH HOH . 
M 8 HOH A 93 693 120 HOH HOH . 
M 8 HOH A 94 694 72 HOH HOH . 
M 8 HOH A 95 695 76 HOH HOH . 
M 8 HOH A 96 696 62 HOH HOH . 
M 8 HOH A 97 697 9 HOH HOH . 
M 8 HOH A 98 698 31 HOH HOH . 
M 8 HOH A 99 699 64 HOH HOH . 
M 8 HOH A 100 700 65 HOH HOH . 
M 8 HOH A 101 701 42 HOH HOH . 
M 8 HOH A 102 702 112 HOH HOH . 
M 8 HOH A 103 703 49 HOH HOH . 
M 8 HOH A 104 704 103 HOH HOH . 
M 8 HOH A 105 705 109 HOH HOH . 
M 8 HOH A 106 706 82 HOH HOH . 
M 8 HOH A 107 707 101 HOH HOH . 
M 8 HOH A 108 708 90 HOH HOH . 
M 8 HOH A 109 709 54 HOH HOH . 
M 8 HOH A 110 710 89 HOH HOH . 
M 8 HOH A 111 711 92 HOH HOH . 
M 8 HOH A 112 712 108 HOH HOH . 
M 8 HOH A 113 713 27 HOH HOH . 
M 8 HOH A 114 714 87 HOH HOH . 
M 8 HOH A 115 715 47 HOH HOH . 
M 8 HOH A 116 716 97 HOH HOH . 
M 8 HOH A 117 717 104 HOH HOH . 
M 8 HOH A 118 718 100 HOH HOH . 
M 8 HOH A 119 719 91 HOH HOH . 
M 8 HOH A 120 720 99 HOH HOH . 
M 8 HOH A 121 721 28 HOH HOH . 
M 8 HOH A 122 722 38 HOH HOH . 
M 8 HOH A 123 723 124 HOH HOH . 
M 8 HOH A 124 724 117 HOH HOH . 
M 8 HOH A 125 725 69 HOH HOH . 
M 8 HOH A 126 726 121 HOH HOH . 
M 8 HOH A 127 727 123 HOH HOH . 
M 8 HOH A 128 728 70 HOH HOH . 
M 8 HOH A 129 729 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 7 -30.777 -23.426 21.886 1 61.35 ? C1 GOL 510 A 1 
HETATM 2 O O1 GOL . . . K 7 -31.202 -22.933 23.16 1 61.39 ? O1 GOL 510 A 1 
HETATM 3 C C2 GOL . . . K 7 -29.473 -22.752 21.463 1 61.89 ? C2 GOL 510 A 1 
HETATM 4 O O2 GOL . . . K 7 -28.864 -23.57 20.453 1 61.93 ? O2 GOL 510 A 1 
HETATM 5 C C3 GOL . . . K 7 -29.716 -21.332 20.931 1 61.03 ? C3 GOL 510 A 1 
HETATM 6 O O3 GOL . . . K 7 -28.745 -20.404 21.444 1 59.4 ? O3 GOL 510 A 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           878 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           6 
#