data_5V3O
#
_model_server_result.job_id            DH0w0UrUbTUo4GzhK8bJ-Q 
_model_server_result.datetime_utc      '2024-11-08 16:36:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v3o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    5V3O 
#
_exptl.entry_id    5V3O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              449.499 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V3O 
_cell.length_a            111.029 
_cell.length_b            126.886 
_cell.length_c            172.487 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V3O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 18 A CYS 18 1_555 A SG CYS 313 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc1 B SG CYS 287 C CYS 323 1_555 D ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc2 B SG CYS 290 C CYS 326 1_555 D ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc3 B SG CYS 358 C CYS 394 1_555 D ZN ZN . C ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
#
_chem_comp.formula           'C25 H27 N3 O5' 
_chem_comp.formula_weight    449.499 
_chem_comp.id                8W7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5V3O 
_atom_sites.fract_transf_matrix[1][1]    0.009007 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007881 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005798 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 8W7 C 1 501 1 8W7 MOL . 
D 4 ZN C 1 502 1 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 8W7 . . . C 3 46.852 57.264 -37.745 1 86.55 ? C1 8W7 501 C 1 
HETATM 2 C C2 8W7 . . . C 3 48.184 56.909 -37.929 1 89.71 ? C2 8W7 501 C 1 
HETATM 3 C C3 8W7 . . . C 3 48.536 55.584 -38.181 1 90.04 ? C3 8W7 501 C 1 
HETATM 4 C C4 8W7 . . . C 3 45.85 56.301 -37.811 1 82.76 ? C4 8W7 501 C 1 
HETATM 5 C C5 8W7 . . . C 3 46.189 54.974 -38.067 1 85.85 ? C5 8W7 501 C 1 
HETATM 6 C C6 8W7 . . . C 3 47.524 54.639 -38.246 1 88.07 ? C6 8W7 501 C 1 
HETATM 7 N N1 8W7 . . . C 3 46.215 52.745 -38.429 1 84.07 ? N1 8W7 501 C 1 
HETATM 8 N N2 8W7 . . . C 3 46.751 49.123 -37.876 1 76.68 ? N2 8W7 501 C 1 
HETATM 9 N N3 8W7 . . . C 3 52.11 56.375 -31.64 1 156.93 ? N3 8W7 501 C 1 
HETATM 10 O O1 8W7 . . . C 3 44.215 53.752 -38.073 1 82.86 ? O1 8W7 501 C 1 
HETATM 11 C C7 8W7 . . . C 3 47.624 53.143 -38.5 1 89.01 ? C7 8W7 501 C 1 
HETATM 12 C C8 8W7 . . . C 3 45.439 53.803 -38.188 1 85.74 ? C8 8W7 501 C 1 
HETATM 13 C C9 8W7 . . . C 3 45.746 51.361 -38.589 1 79.34 ? C9 8W7 501 C 1 
HETATM 14 C C10 8W7 . . . C 3 46.037 50.876 -40.006 1 78.72 ? C10 8W7 501 C 1 
HETATM 15 C C11 8W7 . . . C 3 45.664 49.402 -40.156 1 78.33 ? C11 8W7 501 C 1 
HETATM 16 C C12 8W7 . . . C 3 46.382 48.56 -39.103 1 75.17 ? C12 8W7 501 C 1 
HETATM 17 C C13 8W7 . . . C 3 46.47 50.464 -37.579 1 77.38 ? C13 8W7 501 C 1 
HETATM 18 C C14 8W7 . . . C 3 50.815 56.111 -37.893 1 110.21 ? C14 8W7 501 C 1 
HETATM 19 C C15 8W7 . . . C 3 51.339 56.006 -36.606 1 116.25 ? C15 8W7 501 C 1 
HETATM 20 O O2 8W7 . . . C 3 46.805 50.921 -36.488 1 76.08 ? O2 8W7 501 C 1 
HETATM 21 C C22 8W7 . . . C 3 52.218 55.738 -30.316 1 162.92 ? C22 8W7 501 C 1 
HETATM 22 C C23 8W7 . . . C 3 51.304 56.472 -29.328 1 167.58 ? C23 8W7 501 C 1 
HETATM 23 O O5 8W7 . . . C 3 51.619 57.881 -29.265 1 166.88 ? O5 8W7 501 C 1 
HETATM 24 C C24 8W7 . . . C 3 51.523 58.492 -30.565 1 158.51 ? C24 8W7 501 C 1 
HETATM 25 C C25 8W7 . . . C 3 52.504 57.787 -31.504 1 157.68 ? C25 8W7 501 C 1 
HETATM 26 C C21 8W7 . . . C 3 52.979 55.688 -32.615 1 142.17 ? C21 8W7 501 C 1 
HETATM 27 C C20 8W7 . . . C 3 52.396 55.795 -34.032 1 124.23 ? C20 8W7 501 C 1 
HETATM 28 C C19 8W7 . . . C 3 52.255 54.66 -34.824 1 118.04 ? C19 8W7 501 C 1 
HETATM 29 C C17 8W7 . . . C 3 51.728 54.763 -36.107 1 117.37 ? C17 8W7 501 C 1 
HETATM 30 C C18 8W7 . . . C 3 52.009 57.032 -34.539 1 121.75 ? C18 8W7 501 C 1 
HETATM 31 C C16 8W7 . . . C 3 51.482 57.146 -35.82 1 118.47 ? C16 8W7 501 C 1 
HETATM 32 O O4 8W7 . . . C 3 49.829 55.182 -38.371 1 98.13 ? O4 8W7 501 C 1 
HETATM 33 O O3 8W7 . . . C 3 46.639 47.381 -39.333 1 75.95 ? O3 8W7 501 C 1 
#
_model_server_stats.io_time_ms              70 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           33 
#