data_5V3Q # _model_server_result.job_id iqA1doPvxHekX-4Yh9lziw _model_server_result.datetime_utc '2024-11-12 20:12:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v3q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":801}' # _entry.id 5V3Q # _exptl.entry_id 5V3Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.708 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{3-[(2-chloro-acetyl)-(4-nitro-phenyl)-amino]-propyl}-2,2,2-trifluoro-acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5V3Q _cell.length_a 57.103 _cell.length_b 57.103 _cell.length_c 139.613 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V3Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.537667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 32 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 32 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C03 _struct_conn.ptnr2_label_comp_id MLX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MLX _struct_conn.ptnr2_auth_seq_id 801 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.712 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H13 Cl F3 N3 O4' _chem_comp.formula_weight 367.708 _chem_comp.id MLX _chem_comp.mon_nstd_flag . _chem_comp.name N-{3-[(2-chloro-acetyl)-(4-nitro-phenyl)-amino]-propyl}-2,2,2-trifluoro-acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 N21 MLX sing 237 n n O22 N21 MLX doub 238 n n N21 C20 MLX sing 239 n n C20 C24 MLX doub 240 n y C20 C19 MLX sing 241 n y C24 C25 MLX sing 242 n y C19 C18 MLX doub 243 n y C25 C17 MLX doub 244 n y C03 C04 MLX sing 245 n n C18 C17 MLX sing 246 n y C17 N06 MLX sing 247 n n C04 N06 MLX sing 248 n n C04 O05 MLX doub 249 n n N06 C07 MLX sing 250 n n C07 C08 MLX sing 251 n n C08 C09 MLX sing 252 n n F16 C13 MLX sing 253 n n O12 C11 MLX doub 254 n n C09 N10 MLX sing 255 n n C11 N10 MLX sing 256 n n C11 C13 MLX sing 257 n n F15 C13 MLX sing 258 n n C13 F14 MLX sing 259 n n C03 H1 MLX sing 260 n n C03 H2 MLX sing 261 n n C07 H4 MLX sing 262 n n C07 H5 MLX sing 263 n n C08 H6 MLX sing 264 n n C08 H7 MLX sing 265 n n C09 H8 MLX sing 266 n n C09 H9 MLX sing 267 n n N10 H10 MLX sing 268 n n C18 H11 MLX sing 269 n n C19 H12 MLX sing 270 n n C24 H13 MLX sing 271 n n C25 H14 MLX sing 272 n n C03 CL1 MLX sing 273 n n # _atom_sites.entry_id 5V3Q _atom_sites.fract_transf_matrix[1][1] 0.017512 _atom_sites.fract_transf_matrix[1][2] 0.010111 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020221 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLX A 1 801 801 MLX MLX . C 3 SO4 A 1 802 901 SO4 SO4 . D 3 SO4 A 1 803 902 SO4 SO4 . E 4 HOH A 1 901 8 HOH HOH . E 4 HOH A 2 902 88 HOH HOH . E 4 HOH A 3 903 19 HOH HOH . E 4 HOH A 4 904 83 HOH HOH . E 4 HOH A 5 905 89 HOH HOH . E 4 HOH A 6 906 97 HOH HOH . E 4 HOH A 7 907 25 HOH HOH . E 4 HOH A 8 908 106 HOH HOH . E 4 HOH A 9 909 30 HOH HOH . E 4 HOH A 10 910 34 HOH HOH . E 4 HOH A 11 911 36 HOH HOH . E 4 HOH A 12 912 124 HOH HOH . E 4 HOH A 13 913 123 HOH HOH . E 4 HOH A 14 914 48 HOH HOH . E 4 HOH A 15 915 91 HOH HOH . E 4 HOH A 16 916 65 HOH HOH . E 4 HOH A 17 917 50 HOH HOH . E 4 HOH A 18 918 9 HOH HOH . E 4 HOH A 19 919 82 HOH HOH . E 4 HOH A 20 920 40 HOH HOH . E 4 HOH A 21 921 59 HOH HOH . E 4 HOH A 22 922 23 HOH HOH . E 4 HOH A 23 923 37 HOH HOH . E 4 HOH A 24 924 26 HOH HOH . E 4 HOH A 25 925 156 HOH HOH . E 4 HOH A 26 926 28 HOH HOH . E 4 HOH A 27 927 4 HOH HOH . E 4 HOH A 28 928 78 HOH HOH . E 4 HOH A 29 929 53 HOH HOH . E 4 HOH A 30 930 99 HOH HOH . E 4 HOH A 31 931 6 HOH HOH . E 4 HOH A 32 932 39 HOH HOH . E 4 HOH A 33 933 20 HOH HOH . E 4 HOH A 34 934 69 HOH HOH . E 4 HOH A 35 935 16 HOH HOH . E 4 HOH A 36 936 18 HOH HOH . E 4 HOH A 37 937 5 HOH HOH . E 4 HOH A 38 938 29 HOH HOH . E 4 HOH A 39 939 130 HOH HOH . E 4 HOH A 40 940 35 HOH HOH . E 4 HOH A 41 941 45 HOH HOH . E 4 HOH A 42 942 10 HOH HOH . E 4 HOH A 43 943 1 HOH HOH . E 4 HOH A 44 944 153 HOH HOH . E 4 HOH A 45 945 27 HOH HOH . E 4 HOH A 46 946 63 HOH HOH . E 4 HOH A 47 947 85 HOH HOH . E 4 HOH A 48 948 107 HOH HOH . E 4 HOH A 49 949 105 HOH HOH . E 4 HOH A 50 950 70 HOH HOH . E 4 HOH A 51 951 84 HOH HOH . E 4 HOH A 52 952 21 HOH HOH . E 4 HOH A 53 953 137 HOH HOH . E 4 HOH A 54 954 32 HOH HOH . E 4 HOH A 55 955 117 HOH HOH . E 4 HOH A 56 956 66 HOH HOH . E 4 HOH A 57 957 61 HOH HOH . E 4 HOH A 58 958 98 HOH HOH . E 4 HOH A 59 959 94 HOH HOH . E 4 HOH A 60 960 42 HOH HOH . E 4 HOH A 61 961 49 HOH HOH . E 4 HOH A 62 962 52 HOH HOH . E 4 HOH A 63 963 33 HOH HOH . E 4 HOH A 64 964 43 HOH HOH . E 4 HOH A 65 965 113 HOH HOH . E 4 HOH A 66 966 102 HOH HOH . E 4 HOH A 67 967 114 HOH HOH . E 4 HOH A 68 968 96 HOH HOH . E 4 HOH A 69 969 2 HOH HOH . E 4 HOH A 70 970 92 HOH HOH . E 4 HOH A 71 971 38 HOH HOH . E 4 HOH A 72 972 13 HOH HOH . E 4 HOH A 73 973 14 HOH HOH . E 4 HOH A 74 974 17 HOH HOH . E 4 HOH A 75 975 7 HOH HOH . E 4 HOH A 76 976 24 HOH HOH . E 4 HOH A 77 977 51 HOH HOH . E 4 HOH A 78 978 31 HOH HOH . E 4 HOH A 79 979 71 HOH HOH . E 4 HOH A 80 980 11 HOH HOH . E 4 HOH A 81 981 138 HOH HOH . E 4 HOH A 82 982 140 HOH HOH . E 4 HOH A 83 983 87 HOH HOH . E 4 HOH A 84 984 73 HOH HOH . E 4 HOH A 85 985 90 HOH HOH . E 4 HOH A 86 986 149 HOH HOH . E 4 HOH A 87 987 64 HOH HOH . E 4 HOH A 88 988 115 HOH HOH . E 4 HOH A 89 989 22 HOH HOH . E 4 HOH A 90 990 12 HOH HOH . E 4 HOH A 91 991 62 HOH HOH . E 4 HOH A 92 992 122 HOH HOH . E 4 HOH A 93 993 68 HOH HOH . E 4 HOH A 94 994 76 HOH HOH . E 4 HOH A 95 995 104 HOH HOH . E 4 HOH A 96 996 79 HOH HOH . E 4 HOH A 97 997 74 HOH HOH . E 4 HOH A 98 998 44 HOH HOH . E 4 HOH A 99 999 155 HOH HOH . E 4 HOH A 100 1000 54 HOH HOH . E 4 HOH A 101 1001 60 HOH HOH . E 4 HOH A 102 1002 72 HOH HOH . E 4 HOH A 103 1003 125 HOH HOH . E 4 HOH A 104 1004 58 HOH HOH . E 4 HOH A 105 1005 154 HOH HOH . E 4 HOH A 106 1006 75 HOH HOH . E 4 HOH A 107 1007 15 HOH HOH . E 4 HOH A 108 1008 145 HOH HOH . E 4 HOH A 109 1009 103 HOH HOH . E 4 HOH A 110 1010 47 HOH HOH . E 4 HOH A 111 1011 152 HOH HOH . E 4 HOH A 112 1012 57 HOH HOH . E 4 HOH A 113 1013 100 HOH HOH . E 4 HOH A 114 1014 127 HOH HOH . E 4 HOH A 115 1015 56 HOH HOH . E 4 HOH A 116 1016 46 HOH HOH . E 4 HOH A 117 1017 150 HOH HOH . E 4 HOH A 118 1018 93 HOH HOH . E 4 HOH A 119 1019 139 HOH HOH . E 4 HOH A 120 1020 55 HOH HOH . E 4 HOH A 121 1021 80 HOH HOH . E 4 HOH A 122 1022 101 HOH HOH . E 4 HOH A 123 1023 95 HOH HOH . E 4 HOH A 124 1024 136 HOH HOH . E 4 HOH A 125 1025 108 HOH HOH . E 4 HOH A 126 1026 134 HOH HOH . E 4 HOH A 127 1027 77 HOH HOH . E 4 HOH A 128 1028 109 HOH HOH . E 4 HOH A 129 1029 132 HOH HOH . E 4 HOH A 130 1030 120 HOH HOH . E 4 HOH A 131 1031 112 HOH HOH . E 4 HOH A 132 1032 135 HOH HOH . E 4 HOH A 133 1033 141 HOH HOH . E 4 HOH A 134 1034 151 HOH HOH . E 4 HOH A 135 1035 67 HOH HOH . E 4 HOH A 136 1036 126 HOH HOH . E 4 HOH A 137 1037 81 HOH HOH . E 4 HOH A 138 1038 133 HOH HOH . E 4 HOH A 139 1039 121 HOH HOH . E 4 HOH A 140 1040 131 HOH HOH . E 4 HOH A 141 1041 157 HOH HOH . E 4 HOH A 142 1042 148 HOH HOH . E 4 HOH A 143 1043 116 HOH HOH . E 4 HOH A 144 1044 146 HOH HOH . E 4 HOH A 145 1045 119 HOH HOH . E 4 HOH A 146 1046 142 HOH HOH . E 4 HOH A 147 1047 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C03 MLX . . . B 2 19.073 -6.948 13.735 0.8 32.71 ? C03 MLX 801 A 1 HETATM 2 C C04 MLX . . . B 2 18.544 -6.693 15.093 0.8 35.65 ? C04 MLX 801 A 1 HETATM 3 O O05 MLX . . . B 2 18.812 -7.328 16.078 0.8 36.59 ? O05 MLX 801 A 1 HETATM 4 N N06 MLX . . . B 2 17.603 -5.702 15.163 0.8 39.34 ? N06 MLX 801 A 1 HETATM 5 C C07 MLX . . . B 2 17.004 -5.325 16.475 0.8 42.8 ? C07 MLX 801 A 1 HETATM 6 C C08 MLX . . . B 2 17.335 -3.866 16.8 0.8 44.94 ? C08 MLX 801 A 1 HETATM 7 C C09 MLX . . . B 2 17.009 -3.456 18.24 0.8 48.89 ? C09 MLX 801 A 1 HETATM 8 N N10 MLX . . . B 2 17.428 -2.072 18.383 0.8 50.99 ? N10 MLX 801 A 1 HETATM 9 C C11 MLX . . . B 2 18.76 -1.795 18.282 0.8 53.45 ? C11 MLX 801 A 1 HETATM 10 O O12 MLX . . . B 2 19.699 -2.536 18.147 0.8 49.32 ? O12 MLX 801 A 1 HETATM 11 C C13 MLX . . . B 2 19.234 -0.338 18.452 0.8 60.79 ? C13 MLX 801 A 1 HETATM 12 F F14 MLX . . . B 2 19.904 -0.217 19.628 0.8 60.66 ? F14 MLX 801 A 1 HETATM 13 F F15 MLX . . . B 2 18.267 0.705 18.362 0.8 57.78 ? F15 MLX 801 A 1 HETATM 14 F F16 MLX . . . B 2 20.137 -0.109 17.481 0.8 65.32 ? F16 MLX 801 A 1 HETATM 15 C C17 MLX . . . B 2 17.484 -4.901 14.011 0.8 37.43 ? C17 MLX 801 A 1 HETATM 16 C C18 MLX . . . B 2 18.58 -4.067 13.742 0.8 36.99 ? C18 MLX 801 A 1 HETATM 17 C C19 MLX . . . B 2 18.574 -3.215 12.649 0.8 38.81 ? C19 MLX 801 A 1 HETATM 18 C C20 MLX . . . B 2 17.466 -3.177 11.818 0.8 39.51 ? C20 MLX 801 A 1 HETATM 19 N N21 MLX . . . B 2 17.481 -2.252 10.7 0.8 42.65 ? N21 MLX 801 A 1 HETATM 20 O O22 MLX . . . B 2 18.566 -1.635 10.432 0.8 46.64 ? O22 MLX 801 A 1 HETATM 21 O O23 MLX . . . B 2 16.438 -1.999 10.082 0.8 43.85 ? O23 MLX 801 A 1 HETATM 22 C C24 MLX . . . B 2 16.332 -3.946 12.106 0.8 40.24 ? C24 MLX 801 A 1 HETATM 23 C C25 MLX . . . B 2 16.351 -4.818 13.208 0.8 39.41 ? C25 MLX 801 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 161 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #