data_5V49
#
_model_server_result.job_id            '_GrhvoeLor2erd0qVGsQDA' 
_model_server_result.datetime_utc      '2024-10-19 11:24:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v49 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":802}' 
#
_entry.id    5V49 
#
_exptl.entry_id    5V49 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V49 
_cell.length_a            87.19 
_cell.length_b            106.2 
_cell.length_c            207.52 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V49 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 178 n n 
C1 C2 GOL sing 179 n n 
C1 H11 GOL sing 180 n n 
C1 H12 GOL sing 181 n n 
O1 HO1 GOL sing 182 n n 
C2 O2 GOL sing 183 n n 
C2 C3 GOL sing 184 n n 
C2 H2 GOL sing 185 n n 
O2 HO2 GOL sing 186 n n 
C3 O3 GOL sing 187 n n 
C3 H31 GOL sing 188 n n 
C3 H32 GOL sing 189 n n 
O3 HO3 GOL sing 190 n n 
#
_atom_sites.entry_id                     5V49 
_atom_sites.fract_transf_matrix[1][1]    0.011469 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004819 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MET A 1 800 800 MET MET . 
D 3 8WA B 1 801 1 8WA 917 . 
E 4 GOL B 1 802 2 GOL GOL . 
F 5 HOH A 1 901 85 HOH HOH . 
F 5 HOH A 2 902 159 HOH HOH . 
F 5 HOH A 3 903 154 HOH HOH . 
F 5 HOH A 4 904 13 HOH HOH . 
F 5 HOH A 5 905 48 HOH HOH . 
F 5 HOH A 6 906 87 HOH HOH . 
F 5 HOH A 7 907 55 HOH HOH . 
F 5 HOH A 8 908 69 HOH HOH . 
F 5 HOH A 9 909 153 HOH HOH . 
F 5 HOH A 10 910 27 HOH HOH . 
F 5 HOH A 11 911 112 HOH HOH . 
F 5 HOH A 12 912 29 HOH HOH . 
F 5 HOH A 13 913 68 HOH HOH . 
F 5 HOH A 14 914 135 HOH HOH . 
F 5 HOH A 15 915 77 HOH HOH . 
F 5 HOH A 16 916 30 HOH HOH . 
F 5 HOH A 17 917 75 HOH HOH . 
F 5 HOH A 18 918 123 HOH HOH . 
F 5 HOH A 19 919 160 HOH HOH . 
F 5 HOH A 20 920 42 HOH HOH . 
F 5 HOH A 21 921 12 HOH HOH . 
F 5 HOH A 22 922 24 HOH HOH . 
F 5 HOH A 23 923 100 HOH HOH . 
F 5 HOH A 24 924 23 HOH HOH . 
F 5 HOH A 25 925 143 HOH HOH . 
F 5 HOH A 26 926 161 HOH HOH . 
F 5 HOH A 27 927 32 HOH HOH . 
F 5 HOH A 28 928 86 HOH HOH . 
F 5 HOH A 29 929 53 HOH HOH . 
F 5 HOH A 30 930 152 HOH HOH . 
F 5 HOH A 31 931 109 HOH HOH . 
F 5 HOH A 32 932 139 HOH HOH . 
F 5 HOH A 33 933 88 HOH HOH . 
F 5 HOH A 34 934 137 HOH HOH . 
F 5 HOH A 35 935 8 HOH HOH . 
F 5 HOH A 36 936 108 HOH HOH . 
F 5 HOH A 37 937 17 HOH HOH . 
F 5 HOH A 38 938 20 HOH HOH . 
F 5 HOH A 39 939 73 HOH HOH . 
F 5 HOH A 40 940 117 HOH HOH . 
F 5 HOH A 41 941 84 HOH HOH . 
F 5 HOH A 42 942 5 HOH HOH . 
F 5 HOH A 43 943 118 HOH HOH . 
F 5 HOH A 44 944 7 HOH HOH . 
F 5 HOH A 45 945 47 HOH HOH . 
F 5 HOH A 46 946 4 HOH HOH . 
F 5 HOH A 47 947 61 HOH HOH . 
F 5 HOH A 48 948 43 HOH HOH . 
F 5 HOH A 49 949 142 HOH HOH . 
F 5 HOH A 50 950 72 HOH HOH . 
F 5 HOH A 51 951 6 HOH HOH . 
F 5 HOH A 52 952 116 HOH HOH . 
F 5 HOH A 53 953 78 HOH HOH . 
F 5 HOH A 54 954 50 HOH HOH . 
F 5 HOH A 55 955 89 HOH HOH . 
F 5 HOH A 56 956 64 HOH HOH . 
F 5 HOH A 57 957 82 HOH HOH . 
F 5 HOH A 58 958 101 HOH HOH . 
F 5 HOH A 59 959 144 HOH HOH . 
F 5 HOH A 60 960 41 HOH HOH . 
F 5 HOH A 61 961 113 HOH HOH . 
F 5 HOH A 62 962 54 HOH HOH . 
F 5 HOH A 63 963 19 HOH HOH . 
F 5 HOH A 64 964 25 HOH HOH . 
F 5 HOH A 65 965 26 HOH HOH . 
F 5 HOH A 66 966 133 HOH HOH . 
F 5 HOH A 67 967 98 HOH HOH . 
F 5 HOH A 68 968 49 HOH HOH . 
F 5 HOH A 69 969 119 HOH HOH . 
F 5 HOH A 70 970 57 HOH HOH . 
F 5 HOH A 71 971 164 HOH HOH . 
F 5 HOH A 72 972 35 HOH HOH . 
F 5 HOH A 73 973 9 HOH HOH . 
F 5 HOH A 74 974 155 HOH HOH . 
F 5 HOH A 75 975 44 HOH HOH . 
F 5 HOH A 76 976 58 HOH HOH . 
F 5 HOH A 77 977 149 HOH HOH . 
F 5 HOH A 78 978 102 HOH HOH . 
F 5 HOH A 79 979 81 HOH HOH . 
F 5 HOH A 80 980 99 HOH HOH . 
G 5 HOH B 1 901 125 HOH HOH . 
G 5 HOH B 2 902 165 HOH HOH . 
G 5 HOH B 3 903 92 HOH HOH . 
G 5 HOH B 4 904 33 HOH HOH . 
G 5 HOH B 5 905 163 HOH HOH . 
G 5 HOH B 6 906 114 HOH HOH . 
G 5 HOH B 7 907 16 HOH HOH . 
G 5 HOH B 8 908 39 HOH HOH . 
G 5 HOH B 9 909 2 HOH HOH . 
G 5 HOH B 10 910 136 HOH HOH . 
G 5 HOH B 11 911 127 HOH HOH . 
G 5 HOH B 12 912 63 HOH HOH . 
G 5 HOH B 13 913 166 HOH HOH . 
G 5 HOH B 14 914 40 HOH HOH . 
G 5 HOH B 15 915 96 HOH HOH . 
G 5 HOH B 16 916 22 HOH HOH . 
G 5 HOH B 17 917 157 HOH HOH . 
G 5 HOH B 18 918 74 HOH HOH . 
G 5 HOH B 19 919 83 HOH HOH . 
G 5 HOH B 20 920 124 HOH HOH . 
G 5 HOH B 21 921 107 HOH HOH . 
G 5 HOH B 22 922 111 HOH HOH . 
G 5 HOH B 23 923 14 HOH HOH . 
G 5 HOH B 24 924 38 HOH HOH . 
G 5 HOH B 25 925 105 HOH HOH . 
G 5 HOH B 26 926 65 HOH HOH . 
G 5 HOH B 27 927 145 HOH HOH . 
G 5 HOH B 28 928 150 HOH HOH . 
G 5 HOH B 29 929 31 HOH HOH . 
G 5 HOH B 30 930 120 HOH HOH . 
G 5 HOH B 31 931 147 HOH HOH . 
G 5 HOH B 32 932 15 HOH HOH . 
G 5 HOH B 33 933 46 HOH HOH . 
G 5 HOH B 34 934 104 HOH HOH . 
G 5 HOH B 35 935 106 HOH HOH . 
G 5 HOH B 36 936 97 HOH HOH . 
G 5 HOH B 37 937 21 HOH HOH . 
G 5 HOH B 38 938 121 HOH HOH . 
G 5 HOH B 39 939 91 HOH HOH . 
G 5 HOH B 40 940 36 HOH HOH . 
G 5 HOH B 41 941 52 HOH HOH . 
G 5 HOH B 42 942 3 HOH HOH . 
G 5 HOH B 43 943 56 HOH HOH . 
G 5 HOH B 44 944 140 HOH HOH . 
G 5 HOH B 45 945 168 HOH HOH . 
G 5 HOH B 46 946 95 HOH HOH . 
G 5 HOH B 47 947 162 HOH HOH . 
G 5 HOH B 48 948 170 HOH HOH . 
G 5 HOH B 49 949 18 HOH HOH . 
G 5 HOH B 50 950 94 HOH HOH . 
G 5 HOH B 51 951 129 HOH HOH . 
G 5 HOH B 52 952 103 HOH HOH . 
G 5 HOH B 53 953 90 HOH HOH . 
G 5 HOH B 54 954 45 HOH HOH . 
G 5 HOH B 55 955 80 HOH HOH . 
G 5 HOH B 56 956 128 HOH HOH . 
G 5 HOH B 57 957 115 HOH HOH . 
G 5 HOH B 58 958 169 HOH HOH . 
G 5 HOH B 59 959 134 HOH HOH . 
G 5 HOH B 60 960 151 HOH HOH . 
G 5 HOH B 61 961 71 HOH HOH . 
G 5 HOH B 62 962 76 HOH HOH . 
G 5 HOH B 63 963 67 HOH HOH . 
G 5 HOH B 64 964 51 HOH HOH . 
G 5 HOH B 65 965 79 HOH HOH . 
G 5 HOH B 66 966 60 HOH HOH . 
G 5 HOH B 67 967 158 HOH HOH . 
G 5 HOH B 68 968 148 HOH HOH . 
G 5 HOH B 69 969 10 HOH HOH . 
G 5 HOH B 70 970 122 HOH HOH . 
G 5 HOH B 71 971 126 HOH HOH . 
G 5 HOH B 72 972 37 HOH HOH . 
G 5 HOH B 73 973 70 HOH HOH . 
G 5 HOH B 74 974 141 HOH HOH . 
G 5 HOH B 75 975 28 HOH HOH . 
G 5 HOH B 76 976 59 HOH HOH . 
G 5 HOH B 77 977 1 HOH HOH . 
G 5 HOH B 78 978 131 HOH HOH . 
G 5 HOH B 79 979 138 HOH HOH . 
G 5 HOH B 80 980 132 HOH HOH . 
G 5 HOH B 81 981 146 HOH HOH . 
G 5 HOH B 82 982 167 HOH HOH . 
G 5 HOH B 83 983 34 HOH HOH . 
G 5 HOH B 84 984 110 HOH HOH . 
G 5 HOH B 85 985 156 HOH HOH . 
G 5 HOH B 86 986 130 HOH HOH . 
G 5 HOH B 87 987 11 HOH HOH . 
G 5 HOH B 88 988 66 HOH HOH . 
G 5 HOH B 89 989 62 HOH HOH . 
G 5 HOH B 90 990 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 30.425 6.165 -16.263 1 56.45 ? C1 GOL 802 B 1 
HETATM 2 O O1 GOL . . . E 4 29.104 6.619 -15.963 1 54.62 ? O1 GOL 802 B 1 
HETATM 3 C C2 GOL . . . E 4 30.319 4.676 -16.084 1 56.02 ? C2 GOL 802 B 1 
HETATM 4 O O2 GOL . . . E 4 29.578 4.141 -17.183 1 60.32 ? O2 GOL 802 B 1 
HETATM 5 C C3 GOL . . . E 4 31.653 3.981 -16.019 1 60.08 ? C3 GOL 802 B 1 
HETATM 6 O O3 GOL . . . E 4 31.38 2.727 -15.38 1 60.71 ? O3 GOL 802 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#