data_5V4B # _model_server_result.job_id 8uPnAfs1miBA7_GRXfCbQw _model_server_result.datetime_utc '2024-11-14 19:02:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":2810}' # _entry.id 5V4B # _exptl.entry_id 5V4B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V4B _cell.length_a 233.514 _cell.length_b 233.514 _cell.length_c 108.438 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1 0 -1 0 -1 0 0 0 0 -1 0 0 -108.438 3 'crystal symmetry operation' 10_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 4 'crystal symmetry operation' 15_554 y,x,-z-1 0 1 0 1 0 0 0 0 -1 0 0 -108.438 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C PRO 5 C PRO 197 1_555 C N TPO 6 C TPO 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 C C TPO 6 C TPO 198 1_555 C N PRO 7 C PRO 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale3 C C GLY 9 C GLY 201 1_555 C N SEP 10 C SEP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 5V4B _atom_sites.fract_transf_matrix[1][1] 0.004282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009222 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 B 1 2801 1 SO4 SO4 . E 4 SO4 B 1 2802 2 SO4 SO4 . F 4 SO4 B 1 2803 3 SO4 SO4 . G 4 SO4 B 1 2804 4 SO4 SO4 . H 4 SO4 B 1 2805 5 SO4 SO4 . I 4 SO4 B 1 2806 6 SO4 SO4 . J 4 SO4 B 1 2807 7 SO4 SO4 . K 4 SO4 B 1 2808 8 SO4 SO4 . L 4 SO4 B 1 2809 9 SO4 SO4 . M 5 IMD B 1 2810 1 IMD IMD . N 6 HOH A 1 1201 191 HOH HOH . N 6 HOH A 2 1202 159 HOH HOH . N 6 HOH A 3 1203 176 HOH HOH . N 6 HOH A 4 1204 151 HOH HOH . N 6 HOH A 5 1205 162 HOH HOH . N 6 HOH A 6 1206 121 HOH HOH . N 6 HOH A 7 1207 6 HOH HOH . N 6 HOH A 8 1208 119 HOH HOH . O 6 HOH B 1 2901 8 HOH HOH . O 6 HOH B 2 2902 140 HOH HOH . O 6 HOH B 3 2903 183 HOH HOH . O 6 HOH B 4 2904 98 HOH HOH . O 6 HOH B 5 2905 56 HOH HOH . O 6 HOH B 6 2906 10 HOH HOH . O 6 HOH B 7 2907 85 HOH HOH . O 6 HOH B 8 2908 142 HOH HOH . O 6 HOH B 9 2909 11 HOH HOH . O 6 HOH B 10 2910 170 HOH HOH . O 6 HOH B 11 2911 178 HOH HOH . O 6 HOH B 12 2912 86 HOH HOH . O 6 HOH B 13 2913 38 HOH HOH . O 6 HOH B 14 2914 149 HOH HOH . O 6 HOH B 15 2915 107 HOH HOH . O 6 HOH B 16 2916 135 HOH HOH . O 6 HOH B 17 2917 70 HOH HOH . O 6 HOH B 18 2918 179 HOH HOH . O 6 HOH B 19 2919 100 HOH HOH . O 6 HOH B 20 2920 96 HOH HOH . O 6 HOH B 21 2921 113 HOH HOH . O 6 HOH B 22 2922 84 HOH HOH . O 6 HOH B 23 2923 39 HOH HOH . O 6 HOH B 24 2924 34 HOH HOH . O 6 HOH B 25 2925 19 HOH HOH . O 6 HOH B 26 2926 123 HOH HOH . O 6 HOH B 27 2927 103 HOH HOH . O 6 HOH B 28 2928 57 HOH HOH . O 6 HOH B 29 2929 73 HOH HOH . O 6 HOH B 30 2930 69 HOH HOH . O 6 HOH B 31 2931 17 HOH HOH . O 6 HOH B 32 2932 190 HOH HOH . O 6 HOH B 33 2933 182 HOH HOH . O 6 HOH B 34 2934 181 HOH HOH . O 6 HOH B 35 2935 180 HOH HOH . O 6 HOH B 36 2936 64 HOH HOH . O 6 HOH B 37 2937 115 HOH HOH . O 6 HOH B 38 2938 26 HOH HOH . O 6 HOH B 39 2939 146 HOH HOH . O 6 HOH B 40 2940 137 HOH HOH . O 6 HOH B 41 2941 110 HOH HOH . O 6 HOH B 42 2942 48 HOH HOH . O 6 HOH B 43 2943 147 HOH HOH . O 6 HOH B 44 2944 184 HOH HOH . O 6 HOH B 45 2945 66 HOH HOH . O 6 HOH B 46 2946 102 HOH HOH . O 6 HOH B 47 2947 43 HOH HOH . O 6 HOH B 48 2948 188 HOH HOH . O 6 HOH B 49 2949 94 HOH HOH . O 6 HOH B 50 2950 62 HOH HOH . O 6 HOH B 51 2951 172 HOH HOH . O 6 HOH B 52 2952 83 HOH HOH . O 6 HOH B 53 2953 157 HOH HOH . O 6 HOH B 54 2954 81 HOH HOH . O 6 HOH B 55 2955 129 HOH HOH . O 6 HOH B 56 2956 177 HOH HOH . O 6 HOH B 57 2957 130 HOH HOH . O 6 HOH B 58 2958 87 HOH HOH . O 6 HOH B 59 2959 28 HOH HOH . O 6 HOH B 60 2960 78 HOH HOH . O 6 HOH B 61 2961 30 HOH HOH . O 6 HOH B 62 2962 55 HOH HOH . O 6 HOH B 63 2963 14 HOH HOH . O 6 HOH B 64 2964 109 HOH HOH . O 6 HOH B 65 2965 59 HOH HOH . O 6 HOH B 66 2966 80 HOH HOH . O 6 HOH B 67 2967 136 HOH HOH . O 6 HOH B 68 2968 97 HOH HOH . O 6 HOH B 69 2969 124 HOH HOH . O 6 HOH B 70 2970 156 HOH HOH . O 6 HOH B 71 2971 42 HOH HOH . O 6 HOH B 72 2972 161 HOH HOH . O 6 HOH B 73 2973 16 HOH HOH . O 6 HOH B 74 2974 133 HOH HOH . O 6 HOH B 75 2975 168 HOH HOH . O 6 HOH B 76 2976 126 HOH HOH . O 6 HOH B 77 2977 158 HOH HOH . O 6 HOH B 78 2978 15 HOH HOH . O 6 HOH B 79 2979 22 HOH HOH . O 6 HOH B 80 2980 114 HOH HOH . O 6 HOH B 81 2981 77 HOH HOH . O 6 HOH B 82 2982 72 HOH HOH . O 6 HOH B 83 2983 82 HOH HOH . O 6 HOH B 84 2984 99 HOH HOH . O 6 HOH B 85 2985 44 HOH HOH . O 6 HOH B 86 2986 63 HOH HOH . O 6 HOH B 87 2987 68 HOH HOH . O 6 HOH B 88 2988 117 HOH HOH . O 6 HOH B 89 2989 18 HOH HOH . O 6 HOH B 90 2990 127 HOH HOH . O 6 HOH B 91 2991 36 HOH HOH . O 6 HOH B 92 2992 45 HOH HOH . O 6 HOH B 93 2993 139 HOH HOH . O 6 HOH B 94 2994 61 HOH HOH . O 6 HOH B 95 2995 58 HOH HOH . O 6 HOH B 96 2996 141 HOH HOH . O 6 HOH B 97 2997 175 HOH HOH . O 6 HOH B 98 2998 101 HOH HOH . O 6 HOH B 99 2999 169 HOH HOH . O 6 HOH B 100 3000 25 HOH HOH . O 6 HOH B 101 3001 108 HOH HOH . O 6 HOH B 102 3002 75 HOH HOH . O 6 HOH B 103 3003 145 HOH HOH . O 6 HOH B 104 3004 131 HOH HOH . O 6 HOH B 105 3005 173 HOH HOH . O 6 HOH B 106 3006 46 HOH HOH . O 6 HOH B 107 3007 89 HOH HOH . O 6 HOH B 108 3008 105 HOH HOH . O 6 HOH B 109 3009 93 HOH HOH . O 6 HOH B 110 3010 74 HOH HOH . O 6 HOH B 111 3011 186 HOH HOH . O 6 HOH B 112 3012 65 HOH HOH . O 6 HOH B 113 3013 138 HOH HOH . O 6 HOH B 114 3014 163 HOH HOH . O 6 HOH B 115 3015 90 HOH HOH . O 6 HOH B 116 3016 196 HOH HOH . O 6 HOH B 117 3017 13 HOH HOH . O 6 HOH B 118 3018 144 HOH HOH . O 6 HOH B 119 3019 154 HOH HOH . O 6 HOH B 120 3020 88 HOH HOH . O 6 HOH B 121 3021 40 HOH HOH . O 6 HOH B 122 3022 112 HOH HOH . O 6 HOH B 123 3023 166 HOH HOH . O 6 HOH B 124 3024 41 HOH HOH . O 6 HOH B 125 3025 155 HOH HOH . O 6 HOH B 126 3026 165 HOH HOH . O 6 HOH B 127 3027 118 HOH HOH . O 6 HOH B 128 3028 92 HOH HOH . O 6 HOH B 129 3029 132 HOH HOH . O 6 HOH B 130 3030 122 HOH HOH . O 6 HOH B 131 3031 71 HOH HOH . O 6 HOH B 132 3032 194 HOH HOH . O 6 HOH B 133 3033 143 HOH HOH . O 6 HOH B 134 3034 35 HOH HOH . O 6 HOH B 135 3035 12 HOH HOH . O 6 HOH B 136 3036 49 HOH HOH . O 6 HOH B 137 3037 187 HOH HOH . O 6 HOH B 138 3038 189 HOH HOH . O 6 HOH B 139 3039 32 HOH HOH . O 6 HOH B 140 3040 171 HOH HOH . O 6 HOH B 141 3041 174 HOH HOH . O 6 HOH B 142 3042 106 HOH HOH . O 6 HOH B 143 3043 185 HOH HOH . O 6 HOH B 144 3044 27 HOH HOH . O 6 HOH B 145 3045 20 HOH HOH . O 6 HOH B 146 3046 79 HOH HOH . O 6 HOH B 147 3047 31 HOH HOH . O 6 HOH B 148 3048 193 HOH HOH . O 6 HOH B 149 3049 152 HOH HOH . O 6 HOH B 150 3050 160 HOH HOH . O 6 HOH B 151 3051 125 HOH HOH . O 6 HOH B 152 3052 33 HOH HOH . O 6 HOH B 153 3053 197 HOH HOH . O 6 HOH B 154 3054 195 HOH HOH . P 6 HOH C 1 301 167 HOH HOH . P 6 HOH C 2 302 116 HOH HOH . P 6 HOH C 3 303 192 HOH HOH . P 6 HOH C 4 304 111 HOH HOH . P 6 HOH C 5 305 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . M 5 -43.237 -21.175 -31.566 1 86.46 ? N1 IMD 2810 B 1 HETATM 2 C C2 IMD . . . M 5 -43.602 -21.561 -32.838 1 78.43 ? C2 IMD 2810 B 1 HETATM 3 N N3 IMD . . . M 5 -43.467 -20.465 -33.68 1 77.88 ? N3 IMD 2810 B 1 HETATM 4 C C4 IMD . . . M 5 -43.021 -19.384 -32.944 1 69.29 ? C4 IMD 2810 B 1 HETATM 5 C C5 IMD . . . M 5 -42.874 -19.833 -31.613 1 88.58 ? C5 IMD 2810 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #