data_5V4K
#
_model_server_result.job_id            2qIVsTYduEONtvJ5I3qvJw 
_model_server_result.datetime_utc      '2024-11-21 23:41:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v4k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1201}' 
#
_entry.id    5V4K 
#
_exptl.entry_id    5V4K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V4K 
_cell.length_a            69.57 
_cell.length_b            69.57 
_cell.length_c            119.62 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V4K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     5V4K 
_atom_sites.fract_transf_matrix[1][1]    0.014374 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014374 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00836 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 1201 2 GOL GOL . 
D 3 SO4 A 1 1202 2 SO4 SO4 . 
E 2 GOL B 1 1201 3 GOL GOL . 
F 3 SO4 B 1 1202 1 SO4 SO4 . 
G 4 HOH A 1 1301 135 HOH HOH . 
G 4 HOH A 2 1302 77 HOH HOH . 
G 4 HOH A 3 1303 2 HOH HOH . 
G 4 HOH A 4 1304 63 HOH HOH . 
G 4 HOH A 5 1305 100 HOH HOH . 
G 4 HOH A 6 1306 93 HOH HOH . 
G 4 HOH A 7 1307 81 HOH HOH . 
G 4 HOH A 8 1308 98 HOH HOH . 
G 4 HOH A 9 1309 46 HOH HOH . 
G 4 HOH A 10 1310 1 HOH HOH . 
G 4 HOH A 11 1311 83 HOH HOH . 
G 4 HOH A 12 1312 57 HOH HOH . 
G 4 HOH A 13 1313 102 HOH HOH . 
G 4 HOH A 14 1314 61 HOH HOH . 
G 4 HOH A 15 1315 64 HOH HOH . 
G 4 HOH A 16 1316 47 HOH HOH . 
G 4 HOH A 17 1317 53 HOH HOH . 
G 4 HOH A 18 1318 73 HOH HOH . 
G 4 HOH A 19 1319 3 HOH HOH . 
G 4 HOH A 20 1320 107 HOH HOH . 
G 4 HOH A 21 1321 43 HOH HOH . 
G 4 HOH A 22 1322 113 HOH HOH . 
G 4 HOH A 23 1323 49 HOH HOH . 
G 4 HOH A 24 1324 116 HOH HOH . 
G 4 HOH A 25 1325 120 HOH HOH . 
G 4 HOH A 26 1326 9 HOH HOH . 
G 4 HOH A 27 1327 67 HOH HOH . 
G 4 HOH A 28 1328 97 HOH HOH . 
G 4 HOH A 29 1329 32 HOH HOH . 
G 4 HOH A 30 1330 5 HOH HOH . 
G 4 HOH A 31 1331 103 HOH HOH . 
G 4 HOH A 32 1332 4 HOH HOH . 
G 4 HOH A 33 1333 106 HOH HOH . 
G 4 HOH A 34 1334 13 HOH HOH . 
G 4 HOH A 35 1335 109 HOH HOH . 
G 4 HOH A 36 1336 65 HOH HOH . 
G 4 HOH A 37 1337 12 HOH HOH . 
G 4 HOH A 38 1338 115 HOH HOH . 
G 4 HOH A 39 1339 101 HOH HOH . 
G 4 HOH A 40 1340 126 HOH HOH . 
G 4 HOH A 41 1341 51 HOH HOH . 
G 4 HOH A 42 1342 22 HOH HOH . 
G 4 HOH A 43 1343 40 HOH HOH . 
G 4 HOH A 44 1344 27 HOH HOH . 
G 4 HOH A 45 1345 44 HOH HOH . 
G 4 HOH A 46 1346 54 HOH HOH . 
G 4 HOH A 47 1347 85 HOH HOH . 
G 4 HOH A 48 1348 42 HOH HOH . 
G 4 HOH A 49 1349 60 HOH HOH . 
G 4 HOH A 50 1350 82 HOH HOH . 
G 4 HOH A 51 1351 31 HOH HOH . 
G 4 HOH A 52 1352 26 HOH HOH . 
G 4 HOH A 53 1353 139 HOH HOH . 
G 4 HOH A 54 1354 16 HOH HOH . 
G 4 HOH A 55 1355 20 HOH HOH . 
G 4 HOH A 56 1356 41 HOH HOH . 
G 4 HOH A 57 1357 91 HOH HOH . 
G 4 HOH A 58 1358 52 HOH HOH . 
G 4 HOH A 59 1359 90 HOH HOH . 
G 4 HOH A 60 1360 117 HOH HOH . 
G 4 HOH A 61 1361 108 HOH HOH . 
G 4 HOH A 62 1362 138 HOH HOH . 
G 4 HOH A 63 1363 110 HOH HOH . 
G 4 HOH A 64 1364 55 HOH HOH . 
G 4 HOH A 65 1365 75 HOH HOH . 
G 4 HOH A 66 1366 45 HOH HOH . 
G 4 HOH A 67 1367 125 HOH HOH . 
G 4 HOH A 68 1368 127 HOH HOH . 
G 4 HOH A 69 1369 129 HOH HOH . 
G 4 HOH A 70 1370 59 HOH HOH . 
G 4 HOH A 71 1371 74 HOH HOH . 
G 4 HOH A 72 1372 133 HOH HOH . 
G 4 HOH A 73 1373 50 HOH HOH . 
H 4 HOH B 1 1301 92 HOH HOH . 
H 4 HOH B 2 1302 48 HOH HOH . 
H 4 HOH B 3 1303 62 HOH HOH . 
H 4 HOH B 4 1304 35 HOH HOH . 
H 4 HOH B 5 1305 104 HOH HOH . 
H 4 HOH B 6 1306 84 HOH HOH . 
H 4 HOH B 7 1307 7 HOH HOH . 
H 4 HOH B 8 1308 130 HOH HOH . 
H 4 HOH B 9 1309 58 HOH HOH . 
H 4 HOH B 10 1310 86 HOH HOH . 
H 4 HOH B 11 1311 87 HOH HOH . 
H 4 HOH B 12 1312 37 HOH HOH . 
H 4 HOH B 13 1313 72 HOH HOH . 
H 4 HOH B 14 1314 10 HOH HOH . 
H 4 HOH B 15 1315 119 HOH HOH . 
H 4 HOH B 16 1316 19 HOH HOH . 
H 4 HOH B 17 1317 112 HOH HOH . 
H 4 HOH B 18 1318 24 HOH HOH . 
H 4 HOH B 19 1319 33 HOH HOH . 
H 4 HOH B 20 1320 39 HOH HOH . 
H 4 HOH B 21 1321 23 HOH HOH . 
H 4 HOH B 22 1322 8 HOH HOH . 
H 4 HOH B 23 1323 15 HOH HOH . 
H 4 HOH B 24 1324 21 HOH HOH . 
H 4 HOH B 25 1325 30 HOH HOH . 
H 4 HOH B 26 1326 36 HOH HOH . 
H 4 HOH B 27 1327 6 HOH HOH . 
H 4 HOH B 28 1328 70 HOH HOH . 
H 4 HOH B 29 1329 78 HOH HOH . 
H 4 HOH B 30 1330 14 HOH HOH . 
H 4 HOH B 31 1331 34 HOH HOH . 
H 4 HOH B 32 1332 68 HOH HOH . 
H 4 HOH B 33 1333 25 HOH HOH . 
H 4 HOH B 34 1334 88 HOH HOH . 
H 4 HOH B 35 1335 80 HOH HOH . 
H 4 HOH B 36 1336 66 HOH HOH . 
H 4 HOH B 37 1337 18 HOH HOH . 
H 4 HOH B 38 1338 28 HOH HOH . 
H 4 HOH B 39 1339 99 HOH HOH . 
H 4 HOH B 40 1340 29 HOH HOH . 
H 4 HOH B 41 1341 96 HOH HOH . 
H 4 HOH B 42 1342 17 HOH HOH . 
H 4 HOH B 43 1343 136 HOH HOH . 
H 4 HOH B 44 1344 79 HOH HOH . 
H 4 HOH B 45 1345 111 HOH HOH . 
H 4 HOH B 46 1346 114 HOH HOH . 
H 4 HOH B 47 1347 76 HOH HOH . 
H 4 HOH B 48 1348 69 HOH HOH . 
H 4 HOH B 49 1349 118 HOH HOH . 
H 4 HOH B 50 1350 142 HOH HOH . 
H 4 HOH B 51 1351 122 HOH HOH . 
H 4 HOH B 52 1352 123 HOH HOH . 
H 4 HOH B 53 1353 140 HOH HOH . 
H 4 HOH B 54 1354 121 HOH HOH . 
H 4 HOH B 55 1355 95 HOH HOH . 
H 4 HOH B 56 1356 124 HOH HOH . 
H 4 HOH B 57 1357 134 HOH HOH . 
H 4 HOH B 58 1358 38 HOH HOH . 
H 4 HOH B 59 1359 11 HOH HOH . 
H 4 HOH B 60 1360 89 HOH HOH . 
H 4 HOH B 61 1361 56 HOH HOH . 
H 4 HOH B 62 1362 105 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 -36.628 4.746 -15.6 1 57.19 ? C1 GOL 1201 B 1 
HETATM 2 O O1 GOL . . . E 2 -36.794 5.105 -16.957 1 63.82 ? O1 GOL 1201 B 1 
HETATM 3 C C2 GOL . . . E 2 -37.241 5.786 -14.663 1 55.96 ? C2 GOL 1201 B 1 
HETATM 4 O O2 GOL . . . E 2 -38.254 5.243 -13.85 1 64.55 ? O2 GOL 1201 B 1 
HETATM 5 C C3 GOL . . . E 2 -37.785 6.977 -15.424 1 40.21 ? C3 GOL 1201 B 1 
HETATM 6 O O3 GOL . . . E 2 -38.715 7.649 -14.612 1 39.21 ? O3 GOL 1201 B 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#