data_5V4W # _model_server_result.job_id FHQM0sYf1TYH6yBFjeXWgw _model_server_result.datetime_utc '2024-12-22 11:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 5V4W # _exptl.entry_id 5V4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V4W _cell.length_a 49.709 _cell.length_b 78.873 _cell.length_c 120.333 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5V4W _atom_sites.fract_transf_matrix[1][1] 0.020117 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLC A 1 500 500 GLC AGC . C 3 8WM A 1 501 501 8WM LIG . D 4 IOD A 1 502 502 IOD IOD . E 5 HOH A 1 601 545 HOH HOH . E 5 HOH A 2 602 510 HOH HOH . E 5 HOH A 3 603 540 HOH HOH . E 5 HOH A 4 604 721 HOH HOH . E 5 HOH A 5 605 569 HOH HOH . E 5 HOH A 6 606 629 HOH HOH . E 5 HOH A 7 607 528 HOH HOH . E 5 HOH A 8 608 515 HOH HOH . E 5 HOH A 9 609 646 HOH HOH . E 5 HOH A 10 610 687 HOH HOH . E 5 HOH A 11 611 667 HOH HOH . E 5 HOH A 12 612 604 HOH HOH . E 5 HOH A 13 613 688 HOH HOH . E 5 HOH A 14 614 532 HOH HOH . E 5 HOH A 15 615 567 HOH HOH . E 5 HOH A 16 616 575 HOH HOH . E 5 HOH A 17 617 544 HOH HOH . E 5 HOH A 18 618 631 HOH HOH . E 5 HOH A 19 619 713 HOH HOH . E 5 HOH A 20 620 656 HOH HOH . E 5 HOH A 21 621 619 HOH HOH . E 5 HOH A 22 622 591 HOH HOH . E 5 HOH A 23 623 516 HOH HOH . E 5 HOH A 24 624 518 HOH HOH . E 5 HOH A 25 625 517 HOH HOH . E 5 HOH A 26 626 503 HOH HOH . E 5 HOH A 27 627 652 HOH HOH . E 5 HOH A 28 628 549 HOH HOH . E 5 HOH A 29 629 543 HOH HOH . E 5 HOH A 30 630 534 HOH HOH . E 5 HOH A 31 631 536 HOH HOH . E 5 HOH A 32 632 640 HOH HOH . E 5 HOH A 33 633 579 HOH HOH . E 5 HOH A 34 634 677 HOH HOH . E 5 HOH A 35 635 537 HOH HOH . E 5 HOH A 36 636 641 HOH HOH . E 5 HOH A 37 637 653 HOH HOH . E 5 HOH A 38 638 546 HOH HOH . E 5 HOH A 39 639 681 HOH HOH . E 5 HOH A 40 640 538 HOH HOH . E 5 HOH A 41 641 521 HOH HOH . E 5 HOH A 42 642 514 HOH HOH . E 5 HOH A 43 643 593 HOH HOH . E 5 HOH A 44 644 504 HOH HOH . E 5 HOH A 45 645 585 HOH HOH . E 5 HOH A 46 646 644 HOH HOH . E 5 HOH A 47 647 552 HOH HOH . E 5 HOH A 48 648 627 HOH HOH . E 5 HOH A 49 649 649 HOH HOH . E 5 HOH A 50 650 547 HOH HOH . E 5 HOH A 51 651 509 HOH HOH . E 5 HOH A 52 652 508 HOH HOH . E 5 HOH A 53 653 599 HOH HOH . E 5 HOH A 54 654 594 HOH HOH . E 5 HOH A 55 655 623 HOH HOH . E 5 HOH A 56 656 694 HOH HOH . E 5 HOH A 57 657 686 HOH HOH . E 5 HOH A 58 658 597 HOH HOH . E 5 HOH A 59 659 533 HOH HOH . E 5 HOH A 60 660 676 HOH HOH . E 5 HOH A 61 661 683 HOH HOH . E 5 HOH A 62 662 527 HOH HOH . E 5 HOH A 63 663 647 HOH HOH . E 5 HOH A 64 664 634 HOH HOH . E 5 HOH A 65 665 507 HOH HOH . E 5 HOH A 66 666 530 HOH HOH . E 5 HOH A 67 667 661 HOH HOH . E 5 HOH A 68 668 566 HOH HOH . E 5 HOH A 69 669 710 HOH HOH . E 5 HOH A 70 670 608 HOH HOH . E 5 HOH A 71 671 553 HOH HOH . E 5 HOH A 72 672 672 HOH HOH . E 5 HOH A 73 673 525 HOH HOH . E 5 HOH A 74 674 526 HOH HOH . E 5 HOH A 75 675 520 HOH HOH . E 5 HOH A 76 676 662 HOH HOH . E 5 HOH A 77 677 564 HOH HOH . E 5 HOH A 78 678 665 HOH HOH . E 5 HOH A 79 679 674 HOH HOH . E 5 HOH A 80 680 535 HOH HOH . E 5 HOH A 81 681 602 HOH HOH . E 5 HOH A 82 682 632 HOH HOH . E 5 HOH A 83 683 561 HOH HOH . E 5 HOH A 84 684 705 HOH HOH . E 5 HOH A 85 685 580 HOH HOH . E 5 HOH A 86 686 557 HOH HOH . E 5 HOH A 87 687 622 HOH HOH . E 5 HOH A 88 688 612 HOH HOH . E 5 HOH A 89 689 620 HOH HOH . E 5 HOH A 90 690 524 HOH HOH . E 5 HOH A 91 691 610 HOH HOH . E 5 HOH A 92 692 578 HOH HOH . E 5 HOH A 93 693 668 HOH HOH . E 5 HOH A 94 694 720 HOH HOH . E 5 HOH A 95 695 637 HOH HOH . E 5 HOH A 96 696 657 HOH HOH . E 5 HOH A 97 697 711 HOH HOH . E 5 HOH A 98 698 581 HOH HOH . E 5 HOH A 99 699 706 HOH HOH . E 5 HOH A 100 700 702 HOH HOH . E 5 HOH A 101 701 512 HOH HOH . E 5 HOH A 102 702 666 HOH HOH . E 5 HOH A 103 703 659 HOH HOH . E 5 HOH A 104 704 550 HOH HOH . E 5 HOH A 105 705 583 HOH HOH . E 5 HOH A 106 706 573 HOH HOH . E 5 HOH A 107 707 555 HOH HOH . E 5 HOH A 108 708 670 HOH HOH . E 5 HOH A 109 709 664 HOH HOH . E 5 HOH A 110 710 613 HOH HOH . E 5 HOH A 111 711 621 HOH HOH . E 5 HOH A 112 712 560 HOH HOH . E 5 HOH A 113 713 589 HOH HOH . E 5 HOH A 114 714 571 HOH HOH . E 5 HOH A 115 715 513 HOH HOH . E 5 HOH A 116 716 592 HOH HOH . E 5 HOH A 117 717 625 HOH HOH . E 5 HOH A 118 718 699 HOH HOH . E 5 HOH A 119 719 636 HOH HOH . E 5 HOH A 120 720 658 HOH HOH . E 5 HOH A 121 721 690 HOH HOH . E 5 HOH A 122 722 660 HOH HOH . E 5 HOH A 123 723 696 HOH HOH . E 5 HOH A 124 724 654 HOH HOH . E 5 HOH A 125 725 554 HOH HOH . E 5 HOH A 126 726 559 HOH HOH . E 5 HOH A 127 727 609 HOH HOH . E 5 HOH A 128 728 693 HOH HOH . E 5 HOH A 129 729 506 HOH HOH . E 5 HOH A 130 730 680 HOH HOH . E 5 HOH A 131 731 719 HOH HOH . E 5 HOH A 132 732 638 HOH HOH . E 5 HOH A 133 733 586 HOH HOH . E 5 HOH A 134 734 671 HOH HOH . E 5 HOH A 135 735 596 HOH HOH . E 5 HOH A 136 736 615 HOH HOH . E 5 HOH A 137 737 562 HOH HOH . E 5 HOH A 138 738 551 HOH HOH . E 5 HOH A 139 739 607 HOH HOH . E 5 HOH A 140 740 603 HOH HOH . E 5 HOH A 141 741 617 HOH HOH . E 5 HOH A 142 742 558 HOH HOH . E 5 HOH A 143 743 529 HOH HOH . E 5 HOH A 144 744 685 HOH HOH . E 5 HOH A 145 745 539 HOH HOH . E 5 HOH A 146 746 605 HOH HOH . E 5 HOH A 147 747 574 HOH HOH . E 5 HOH A 148 748 618 HOH HOH . E 5 HOH A 149 749 519 HOH HOH . E 5 HOH A 150 750 675 HOH HOH . E 5 HOH A 151 751 522 HOH HOH . E 5 HOH A 152 752 703 HOH HOH . E 5 HOH A 153 753 523 HOH HOH . E 5 HOH A 154 754 565 HOH HOH . E 5 HOH A 155 755 606 HOH HOH . E 5 HOH A 156 756 505 HOH HOH . E 5 HOH A 157 757 548 HOH HOH . E 5 HOH A 158 758 582 HOH HOH . E 5 HOH A 159 759 614 HOH HOH . E 5 HOH A 160 760 639 HOH HOH . E 5 HOH A 161 761 511 HOH HOH . E 5 HOH A 162 762 708 HOH HOH . E 5 HOH A 163 763 630 HOH HOH . E 5 HOH A 164 764 717 HOH HOH . E 5 HOH A 165 765 628 HOH HOH . E 5 HOH A 166 766 570 HOH HOH . E 5 HOH A 167 767 568 HOH HOH . E 5 HOH A 168 768 714 HOH HOH . E 5 HOH A 169 769 633 HOH HOH . E 5 HOH A 170 770 701 HOH HOH . E 5 HOH A 171 771 635 HOH HOH . E 5 HOH A 172 772 718 HOH HOH . E 5 HOH A 173 773 601 HOH HOH . E 5 HOH A 174 774 588 HOH HOH . E 5 HOH A 175 775 684 HOH HOH . E 5 HOH A 176 776 626 HOH HOH . E 5 HOH A 177 777 587 HOH HOH . E 5 HOH A 178 778 616 HOH HOH . E 5 HOH A 179 779 716 HOH HOH . E 5 HOH A 180 780 645 HOH HOH . E 5 HOH A 181 781 576 HOH HOH . E 5 HOH A 182 782 678 HOH HOH . E 5 HOH A 183 783 651 HOH HOH . E 5 HOH A 184 784 722 HOH HOH . E 5 HOH A 185 785 689 HOH HOH . E 5 HOH A 186 786 691 HOH HOH . E 5 HOH A 187 787 707 HOH HOH . E 5 HOH A 188 788 598 HOH HOH . E 5 HOH A 189 789 611 HOH HOH . E 5 HOH A 190 790 531 HOH HOH . E 5 HOH A 191 791 725 HOH HOH . E 5 HOH A 192 792 655 HOH HOH . E 5 HOH A 193 793 673 HOH HOH . E 5 HOH A 194 794 698 HOH HOH . E 5 HOH A 195 795 663 HOH HOH . E 5 HOH A 196 796 590 HOH HOH . E 5 HOH A 197 797 541 HOH HOH . E 5 HOH A 198 798 724 HOH HOH . E 5 HOH A 199 799 643 HOH HOH . E 5 HOH A 200 800 563 HOH HOH . E 5 HOH A 201 801 715 HOH HOH . E 5 HOH A 202 802 648 HOH HOH . E 5 HOH A 203 803 572 HOH HOH . E 5 HOH A 204 804 704 HOH HOH . E 5 HOH A 205 805 624 HOH HOH . E 5 HOH A 206 806 709 HOH HOH . E 5 HOH A 207 807 600 HOH HOH . E 5 HOH A 208 808 556 HOH HOH . E 5 HOH A 209 809 542 HOH HOH . E 5 HOH A 210 810 584 HOH HOH . E 5 HOH A 211 811 669 HOH HOH . E 5 HOH A 212 812 695 HOH HOH . E 5 HOH A 213 813 697 HOH HOH . E 5 HOH A 214 814 712 HOH HOH . E 5 HOH A 215 815 682 HOH HOH . E 5 HOH A 216 816 700 HOH HOH . E 5 HOH A 217 817 679 HOH HOH . E 5 HOH A 218 818 723 HOH HOH . E 5 HOH A 219 819 595 HOH HOH . E 5 HOH A 220 820 692 HOH HOH . E 5 HOH A 221 821 650 HOH HOH . E 5 HOH A 222 822 726 HOH HOH . E 5 HOH A 223 823 642 HOH HOH . E 5 HOH A 224 824 727 HOH HOH . E 5 HOH A 225 825 577 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 23.036 _atom_site.Cartn_y -6.474 _atom_site.Cartn_z -7.803 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 13.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 1 #