data_5V4X
#
_model_server_result.job_id            c4G6Sm-xvr8stxKG1qM17Q 
_model_server_result.datetime_utc      '2025-03-12 04:09:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v4x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":500}' 
#
_entry.id    5V4X 
#
_exptl.entry_id    5V4X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V4X 
_cell.length_a            48.874 
_cell.length_b            77.855 
_cell.length_c            119.927 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V4X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                GLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-glucose;D-glucose;glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GLC sing 146 n n 
C1 O1 GLC sing 147 n n 
C1 O5 GLC sing 148 n n 
C1 H1 GLC sing 149 n n 
C2 C3 GLC sing 150 n n 
C2 O2 GLC sing 151 n n 
C2 H2 GLC sing 152 n n 
C3 C4 GLC sing 153 n n 
C3 O3 GLC sing 154 n n 
C3 H3 GLC sing 155 n n 
C4 C5 GLC sing 156 n n 
C4 O4 GLC sing 157 n n 
C4 H4 GLC sing 158 n n 
C5 C6 GLC sing 159 n n 
C5 O5 GLC sing 160 n n 
C5 H5 GLC sing 161 n n 
C6 O6 GLC sing 162 n n 
C6 H61 GLC sing 163 n n 
C6 H62 GLC sing 164 n n 
O1 HO1 GLC sing 165 n n 
O2 HO2 GLC sing 166 n n 
O3 HO3 GLC sing 167 n n 
O4 HO4 GLC sing 168 n n 
O6 HO6 GLC sing 169 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GLC a-D-glucopyranose 'COMMON NAME' GMML 1 
GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5V4X 
_atom_sites.fract_transf_matrix[1][1]    0.020461 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012844 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008338 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLC A 1 500 500 GLC AGC . 
C 3 8WJ A 1 501 501 8WJ LIG . 
D 4 IOD A 1 502 502 IOD IOD . 
E 4 IOD A 1 503 503 IOD IOD . 
F 4 IOD A 1 504 504 IOD IOD . 
G 5 HOH A 1 601 656 HOH HOH . 
G 5 HOH A 2 602 601 HOH HOH . 
G 5 HOH A 3 603 684 HOH HOH . 
G 5 HOH A 4 604 719 HOH HOH . 
G 5 HOH A 5 605 600 HOH HOH . 
G 5 HOH A 6 606 674 HOH HOH . 
G 5 HOH A 7 607 630 HOH HOH . 
G 5 HOH A 8 608 685 HOH HOH . 
G 5 HOH A 9 609 746 HOH HOH . 
G 5 HOH A 10 610 670 HOH HOH . 
G 5 HOH A 11 611 720 HOH HOH . 
G 5 HOH A 12 612 681 HOH HOH . 
G 5 HOH A 13 613 643 HOH HOH . 
G 5 HOH A 14 614 714 HOH HOH . 
G 5 HOH A 15 615 776 HOH HOH . 
G 5 HOH A 16 616 688 HOH HOH . 
G 5 HOH A 17 617 780 HOH HOH . 
G 5 HOH A 18 618 667 HOH HOH . 
G 5 HOH A 19 619 759 HOH HOH . 
G 5 HOH A 20 620 605 HOH HOH . 
G 5 HOH A 21 621 609 HOH HOH . 
G 5 HOH A 22 622 698 HOH HOH . 
G 5 HOH A 23 623 625 HOH HOH . 
G 5 HOH A 24 624 754 HOH HOH . 
G 5 HOH A 25 625 657 HOH HOH . 
G 5 HOH A 26 626 775 HOH HOH . 
G 5 HOH A 27 627 636 HOH HOH . 
G 5 HOH A 28 628 679 HOH HOH . 
G 5 HOH A 29 629 635 HOH HOH . 
G 5 HOH A 30 630 706 HOH HOH . 
G 5 HOH A 31 631 653 HOH HOH . 
G 5 HOH A 32 632 622 HOH HOH . 
G 5 HOH A 33 633 738 HOH HOH . 
G 5 HOH A 34 634 639 HOH HOH . 
G 5 HOH A 35 635 811 HOH HOH . 
G 5 HOH A 36 636 613 HOH HOH . 
G 5 HOH A 37 637 699 HOH HOH . 
G 5 HOH A 38 638 737 HOH HOH . 
G 5 HOH A 39 639 621 HOH HOH . 
G 5 HOH A 40 640 617 HOH HOH . 
G 5 HOH A 41 641 645 HOH HOH . 
G 5 HOH A 42 642 781 HOH HOH . 
G 5 HOH A 43 643 704 HOH HOH . 
G 5 HOH A 44 644 604 HOH HOH . 
G 5 HOH A 45 645 723 HOH HOH . 
G 5 HOH A 46 646 637 HOH HOH . 
G 5 HOH A 47 647 638 HOH HOH . 
G 5 HOH A 48 648 773 HOH HOH . 
G 5 HOH A 49 649 695 HOH HOH . 
G 5 HOH A 50 650 647 HOH HOH . 
G 5 HOH A 51 651 772 HOH HOH . 
G 5 HOH A 52 652 655 HOH HOH . 
G 5 HOH A 53 653 628 HOH HOH . 
G 5 HOH A 54 654 678 HOH HOH . 
G 5 HOH A 55 655 744 HOH HOH . 
G 5 HOH A 56 656 730 HOH HOH . 
G 5 HOH A 57 657 729 HOH HOH . 
G 5 HOH A 58 658 702 HOH HOH . 
G 5 HOH A 59 659 749 HOH HOH . 
G 5 HOH A 60 660 664 HOH HOH . 
G 5 HOH A 61 661 794 HOH HOH . 
G 5 HOH A 62 662 785 HOH HOH . 
G 5 HOH A 63 663 756 HOH HOH . 
G 5 HOH A 64 664 817 HOH HOH . 
G 5 HOH A 65 665 791 HOH HOH . 
G 5 HOH A 66 666 711 HOH HOH . 
G 5 HOH A 67 667 612 HOH HOH . 
G 5 HOH A 68 668 689 HOH HOH . 
G 5 HOH A 69 669 623 HOH HOH . 
G 5 HOH A 70 670 624 HOH HOH . 
G 5 HOH A 71 671 658 HOH HOH . 
G 5 HOH A 72 672 627 HOH HOH . 
G 5 HOH A 73 673 705 HOH HOH . 
G 5 HOH A 74 674 672 HOH HOH . 
G 5 HOH A 75 675 806 HOH HOH . 
G 5 HOH A 76 676 633 HOH HOH . 
G 5 HOH A 77 677 816 HOH HOH . 
G 5 HOH A 78 678 616 HOH HOH . 
G 5 HOH A 79 679 641 HOH HOH . 
G 5 HOH A 80 680 662 HOH HOH . 
G 5 HOH A 81 681 669 HOH HOH . 
G 5 HOH A 82 682 687 HOH HOH . 
G 5 HOH A 83 683 736 HOH HOH . 
G 5 HOH A 84 684 686 HOH HOH . 
G 5 HOH A 85 685 691 HOH HOH . 
G 5 HOH A 86 686 665 HOH HOH . 
G 5 HOH A 87 687 799 HOH HOH . 
G 5 HOH A 88 688 660 HOH HOH . 
G 5 HOH A 89 689 611 HOH HOH . 
G 5 HOH A 90 690 740 HOH HOH . 
G 5 HOH A 91 691 778 HOH HOH . 
G 5 HOH A 92 692 629 HOH HOH . 
G 5 HOH A 93 693 646 HOH HOH . 
G 5 HOH A 94 694 801 HOH HOH . 
G 5 HOH A 95 695 614 HOH HOH . 
G 5 HOH A 96 696 652 HOH HOH . 
G 5 HOH A 97 697 715 HOH HOH . 
G 5 HOH A 98 698 694 HOH HOH . 
G 5 HOH A 99 699 708 HOH HOH . 
G 5 HOH A 100 700 777 HOH HOH . 
G 5 HOH A 101 701 654 HOH HOH . 
G 5 HOH A 102 702 797 HOH HOH . 
G 5 HOH A 103 703 782 HOH HOH . 
G 5 HOH A 104 704 683 HOH HOH . 
G 5 HOH A 105 705 713 HOH HOH . 
G 5 HOH A 106 706 732 HOH HOH . 
G 5 HOH A 107 707 668 HOH HOH . 
G 5 HOH A 108 708 783 HOH HOH . 
G 5 HOH A 109 709 751 HOH HOH . 
G 5 HOH A 110 710 661 HOH HOH . 
G 5 HOH A 111 711 731 HOH HOH . 
G 5 HOH A 112 712 673 HOH HOH . 
G 5 HOH A 113 713 707 HOH HOH . 
G 5 HOH A 114 714 766 HOH HOH . 
G 5 HOH A 115 715 620 HOH HOH . 
G 5 HOH A 116 716 610 HOH HOH . 
G 5 HOH A 117 717 809 HOH HOH . 
G 5 HOH A 118 718 747 HOH HOH . 
G 5 HOH A 119 719 750 HOH HOH . 
G 5 HOH A 120 720 762 HOH HOH . 
G 5 HOH A 121 721 651 HOH HOH . 
G 5 HOH A 122 722 618 HOH HOH . 
G 5 HOH A 123 723 696 HOH HOH . 
G 5 HOH A 124 724 765 HOH HOH . 
G 5 HOH A 125 725 701 HOH HOH . 
G 5 HOH A 126 726 710 HOH HOH . 
G 5 HOH A 127 727 692 HOH HOH . 
G 5 HOH A 128 728 804 HOH HOH . 
G 5 HOH A 129 729 697 HOH HOH . 
G 5 HOH A 130 730 815 HOH HOH . 
G 5 HOH A 131 731 758 HOH HOH . 
G 5 HOH A 132 732 631 HOH HOH . 
G 5 HOH A 133 733 677 HOH HOH . 
G 5 HOH A 134 734 742 HOH HOH . 
G 5 HOH A 135 735 728 HOH HOH . 
G 5 HOH A 136 736 682 HOH HOH . 
G 5 HOH A 137 737 813 HOH HOH . 
G 5 HOH A 138 738 748 HOH HOH . 
G 5 HOH A 139 739 768 HOH HOH . 
G 5 HOH A 140 740 757 HOH HOH . 
G 5 HOH A 141 741 822 HOH HOH . 
G 5 HOH A 142 742 680 HOH HOH . 
G 5 HOH A 143 743 663 HOH HOH . 
G 5 HOH A 144 744 603 HOH HOH . 
G 5 HOH A 145 745 752 HOH HOH . 
G 5 HOH A 146 746 648 HOH HOH . 
G 5 HOH A 147 747 753 HOH HOH . 
G 5 HOH A 148 748 734 HOH HOH . 
G 5 HOH A 149 749 676 HOH HOH . 
G 5 HOH A 150 750 602 HOH HOH . 
G 5 HOH A 151 751 606 HOH HOH . 
G 5 HOH A 152 752 642 HOH HOH . 
G 5 HOH A 153 753 675 HOH HOH . 
G 5 HOH A 154 754 607 HOH HOH . 
G 5 HOH A 155 755 722 HOH HOH . 
G 5 HOH A 156 756 770 HOH HOH . 
G 5 HOH A 157 757 818 HOH HOH . 
G 5 HOH A 158 758 787 HOH HOH . 
G 5 HOH A 159 759 717 HOH HOH . 
G 5 HOH A 160 760 659 HOH HOH . 
G 5 HOH A 161 761 724 HOH HOH . 
G 5 HOH A 162 762 798 HOH HOH . 
G 5 HOH A 163 763 774 HOH HOH . 
G 5 HOH A 164 764 727 HOH HOH . 
G 5 HOH A 165 765 632 HOH HOH . 
G 5 HOH A 166 766 805 HOH HOH . 
G 5 HOH A 167 767 735 HOH HOH . 
G 5 HOH A 168 768 718 HOH HOH . 
G 5 HOH A 169 769 626 HOH HOH . 
G 5 HOH A 170 770 743 HOH HOH . 
G 5 HOH A 171 771 700 HOH HOH . 
G 5 HOH A 172 772 761 HOH HOH . 
G 5 HOH A 173 773 739 HOH HOH . 
G 5 HOH A 174 774 820 HOH HOH . 
G 5 HOH A 175 775 615 HOH HOH . 
G 5 HOH A 176 776 690 HOH HOH . 
G 5 HOH A 177 777 803 HOH HOH . 
G 5 HOH A 178 778 709 HOH HOH . 
G 5 HOH A 179 779 755 HOH HOH . 
G 5 HOH A 180 780 790 HOH HOH . 
G 5 HOH A 181 781 760 HOH HOH . 
G 5 HOH A 182 782 800 HOH HOH . 
G 5 HOH A 183 783 802 HOH HOH . 
G 5 HOH A 184 784 716 HOH HOH . 
G 5 HOH A 185 785 810 HOH HOH . 
G 5 HOH A 186 786 823 HOH HOH . 
G 5 HOH A 187 787 767 HOH HOH . 
G 5 HOH A 188 788 821 HOH HOH . 
G 5 HOH A 189 789 792 HOH HOH . 
G 5 HOH A 190 790 721 HOH HOH . 
G 5 HOH A 191 791 745 HOH HOH . 
G 5 HOH A 192 792 712 HOH HOH . 
G 5 HOH A 193 793 769 HOH HOH . 
G 5 HOH A 194 794 763 HOH HOH . 
G 5 HOH A 195 795 812 HOH HOH . 
G 5 HOH A 196 796 789 HOH HOH . 
G 5 HOH A 197 797 807 HOH HOH . 
G 5 HOH A 198 798 779 HOH HOH . 
G 5 HOH A 199 799 808 HOH HOH . 
G 5 HOH A 200 800 793 HOH HOH . 
G 5 HOH A 201 801 693 HOH HOH . 
G 5 HOH A 202 802 666 HOH HOH . 
G 5 HOH A 203 803 634 HOH HOH . 
G 5 HOH A 204 804 649 HOH HOH . 
G 5 HOH A 205 805 644 HOH HOH . 
G 5 HOH A 206 806 788 HOH HOH . 
G 5 HOH A 207 807 786 HOH HOH . 
G 5 HOH A 208 808 814 HOH HOH . 
G 5 HOH A 209 809 764 HOH HOH . 
G 5 HOH A 210 810 771 HOH HOH . 
G 5 HOH A 211 811 795 HOH HOH . 
G 5 HOH A 212 812 824 HOH HOH . 
G 5 HOH A 213 813 819 HOH HOH . 
G 5 HOH A 214 814 784 HOH HOH . 
G 5 HOH A 215 815 733 HOH HOH . 
G 5 HOH A 216 816 608 HOH HOH . 
G 5 HOH A 217 817 703 HOH HOH . 
G 5 HOH A 218 818 796 HOH HOH . 
G 5 HOH A 219 819 725 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GLC . . . B 2 14.625 -10.345 -16.811 1 25.14 ? C1 GLC 500 A 1 
HETATM 2 C C2 GLC . . . B 2 15.124 -10.476 -15.361 1 23.77 ? C2 GLC 500 A 1 
HETATM 3 C C3 GLC . . . B 2 16.096 -9.322 -15.035 1 26.66 ? C3 GLC 500 A 1 
HETATM 4 C C4 GLC . . . B 2 17.231 -9.242 -16.051 1 22.96 ? C4 GLC 500 A 1 
HETATM 5 C C5 GLC . . . B 2 16.613 -9.118 -17.448 1 22.75 ? C5 GLC 500 A 1 
HETATM 6 C C6 GLC . . . B 2 17.67 -9.02 -18.536 1 22.3 ? C6 GLC 500 A 1 
HETATM 7 O O1 GLC . . . B 2 13.895 -9.124 -16.94 1 25.85 ? O1 GLC 500 A 1 
HETATM 8 O O2 GLC . . . B 2 14.003 -10.336 -14.526 1 26.19 ? O2 GLC 500 A 1 
HETATM 9 O O3 GLC . . . B 2 16.617 -9.354 -13.7 1 26.61 ? O3 GLC 500 A 1 
HETATM 10 O O4 GLC . . . B 2 17.971 -8.077 -15.763 1 23.07 ? O4 GLC 500 A 1 
HETATM 11 O O5 GLC . . . B 2 15.741 -10.239 -17.712 1 25.29 ? O5 GLC 500 A 1 
HETATM 12 O O6 GLC . . . B 2 18.414 -10.225 -18.501 1 21.96 ? O6 GLC 500 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           631 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           12 
#