data_5V54 # _model_server_result.job_id lBe6Q6_CO5oT7nf5WtzuOg _model_server_result.datetime_utc '2024-11-28 07:12:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 5V54 # _exptl.entry_id 5V54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.548 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 124.07 _cell.angle_gamma 90 _cell.entry_id 5V54 _cell.length_a 235.2 _cell.length_b 48.83 _cell.length_c 139.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 86 A CYS 122 1_555 A SG CYS 163 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 86 B CYS 122 1_555 B SG CYS 163 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C20 H24 N2 S2' _chem_comp.formula_weight 356.548 _chem_comp.id 89F _chem_comp.mon_nstd_flag . _chem_comp.name 1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Methiothepin;Metitepine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C15 89F doub 1 n y C19 C16 89F sing 2 n y C15 C13 89F sing 3 n y C16 C10 89F doub 4 n y C5 N2 89F sing 5 n n N2 C18 89F sing 6 n n N2 C11 89F sing 7 n n C18 C14 89F sing 8 n n C14 N1 89F sing 9 n n C13 C7 89F doub 10 n y C10 C7 89F sing 11 n y C10 C20 89F sing 12 n n C7 S2 89F sing 13 n n C20 C6 89F sing 14 n n C11 C17 89F sing 15 n n C17 N1 89F sing 16 n n N1 C6 89F sing 17 n n C6 C2 89F sing 18 n n S2 C1 89F sing 19 n n C2 C1 89F doub 20 n y C2 C9 89F sing 21 n y C1 C3 89F sing 22 n y C9 C12 89F doub 23 n y C3 C4 89F doub 24 n y C12 C4 89F sing 25 n y C12 S1 89F sing 26 n n S1 C8 89F sing 27 n n C6 H1 89F sing 28 n n C9 H2 89F sing 29 n n C4 H3 89F sing 30 n n C3 H6 89F sing 31 n n C5 H7 89F sing 32 n n C5 H8 89F sing 33 n n C5 H9 89F sing 34 n n C8 H10 89F sing 35 n n C8 H11 89F sing 36 n n C8 H12 89F sing 37 n n C11 H13 89F sing 38 n n C11 H14 89F sing 39 n n C13 H15 89F sing 40 n n C14 H16 89F sing 41 n n C14 H17 89F sing 42 n n C15 H18 89F sing 43 n n C16 H19 89F sing 44 n n C17 H20 89F sing 45 n n C17 H21 89F sing 46 n n C18 H22 89F sing 47 n n C18 H23 89F sing 48 n n C19 H24 89F sing 49 n n C20 H25 89F sing 50 n n C20 H26 89F sing 51 n n # _atom_sites.entry_id 5V54 _atom_sites.fract_transf_matrix[1][1] 0.004252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002875 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 89F A 1 1201 900 89F MPN . D 2 89F B 1 1201 900 89F MPN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 89F . . . C 2 -29.126 -4.138 38.37 1 200.49 ? C7 89F 1201 A 1 HETATM 2 C C6 89F . . . C 2 -31.62 -5.42 37.386 1 153.18 ? C6 89F 1201 A 1 HETATM 3 C C10 89F . . . C 2 -29.347 -5.566 38.364 1 135.34 ? C10 89F 1201 A 1 HETATM 4 C C9 89F . . . C 2 -32.152 -5.351 34.914 1 134.01 ? C9 89F 1201 A 1 HETATM 5 C C4 89F . . . C 2 -31.342 -3.534 33.541 1 119.32 ? C4 89F 1201 A 1 HETATM 6 C C2 89F . . . C 2 -31.531 -4.773 36.037 1 293.77 ? C2 89F 1201 A 1 HETATM 7 N N1 89F . . . C 2 -32.883 -6.197 37.447 1 214.68 ? N1 89F 1201 A 1 HETATM 8 N N2 89F . . . C 2 -35.135 -7.515 38.689 1 183.63 ? N2 89F 1201 A 1 HETATM 9 C C1 89F . . . C 2 -30.832 -3.608 35.918 1 298.81 ? C1 89F 1201 A 1 HETATM 10 C C3 89F . . . C 2 -30.733 -2.975 34.666 1 215.43 ? C3 89F 1201 A 1 HETATM 11 C C5 89F . . . C 2 -36.421 -8.228 38.511 1 194.72 ? C5 89F 1201 A 1 HETATM 12 C C8 89F . . . C 2 -31.731 -4.827 30.915 1 216.55 ? C8 89F 1201 A 1 HETATM 13 C C11 89F . . . C 2 -35.243 -6.159 38.119 1 223.05 ? C11 89F 1201 A 1 HETATM 14 C C12 89F . . . C 2 -32.054 -4.728 33.665 1 117.36 ? C12 89F 1201 A 1 HETATM 15 C C13 89F . . . C 2 -28.131 -3.641 39.219 1 141.63 ? C13 89F 1201 A 1 HETATM 16 C C14 89F . . . C 2 -32.706 -7.487 38.105 1 154.34 ? C14 89F 1201 A 1 HETATM 17 C C15 89F . . . C 2 -27.378 -4.476 40.033 1 111.98 ? C15 89F 1201 A 1 HETATM 18 C C16 89F . . . C 2 -28.573 -6.379 39.199 1 118.44 ? C16 89F 1201 A 1 HETATM 19 C C17 89F . . . C 2 -33.899 -5.432 38.167 1 190.44 ? C17 89F 1201 A 1 HETATM 20 C C18 89F . . . C 2 -34.026 -8.28 38.075 1 134.12 ? C18 89F 1201 A 1 HETATM 21 C C19 89F . . . C 2 -27.597 -5.839 40.024 1 110.53 ? C19 89F 1201 A 1 HETATM 22 C C20 89F . . . C 2 -30.401 -6.277 37.52 1 127.47 ? C20 89F 1201 A 1 HETATM 23 S S1 89F . . . C 2 -32.871 -5.457 32.204 1 236.79 ? S1 89F 1201 A 1 HETATM 24 S S2 89F . . . C 2 -29.972 -2.822 37.333 1 220 ? S2 89F 1201 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 24 #