data_5V54
#
_model_server_result.job_id            cWeZog6jIC0JbRIGDO8I5g 
_model_server_result.datetime_utc      '2024-11-28 07:12:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v54 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1201}' 
#
_entry.id    5V54 
#
_exptl.entry_id    5V54 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.548 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          124.07 
_cell.angle_gamma         90 
_cell.entry_id            5V54 
_cell.length_a            235.2 
_cell.length_b            48.83 
_cell.length_c            139.22 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V54 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 86 A CYS 122 1_555 A SG CYS 163 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 B SG CYS 86 B CYS 122 1_555 B SG CYS 163 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C20 H24 N2 S2' 
_chem_comp.formula_weight    356.548 
_chem_comp.id                89F 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-methyl-4-[(5~{S})-3-methylsulfanyl-5,6-dihydrobenzo[b][1]benzothiepin-5-yl]piperazine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Methiothepin;Metitepine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C19 C15 89F doub 1 n y 
C19 C16 89F sing 2 n y 
C15 C13 89F sing 3 n y 
C16 C10 89F doub 4 n y 
C5 N2 89F sing 5 n n 
N2 C18 89F sing 6 n n 
N2 C11 89F sing 7 n n 
C18 C14 89F sing 8 n n 
C14 N1 89F sing 9 n n 
C13 C7 89F doub 10 n y 
C10 C7 89F sing 11 n y 
C10 C20 89F sing 12 n n 
C7 S2 89F sing 13 n n 
C20 C6 89F sing 14 n n 
C11 C17 89F sing 15 n n 
C17 N1 89F sing 16 n n 
N1 C6 89F sing 17 n n 
C6 C2 89F sing 18 n n 
S2 C1 89F sing 19 n n 
C2 C1 89F doub 20 n y 
C2 C9 89F sing 21 n y 
C1 C3 89F sing 22 n y 
C9 C12 89F doub 23 n y 
C3 C4 89F doub 24 n y 
C12 C4 89F sing 25 n y 
C12 S1 89F sing 26 n n 
S1 C8 89F sing 27 n n 
C6 H1 89F sing 28 n n 
C9 H2 89F sing 29 n n 
C4 H3 89F sing 30 n n 
C3 H6 89F sing 31 n n 
C5 H7 89F sing 32 n n 
C5 H8 89F sing 33 n n 
C5 H9 89F sing 34 n n 
C8 H10 89F sing 35 n n 
C8 H11 89F sing 36 n n 
C8 H12 89F sing 37 n n 
C11 H13 89F sing 38 n n 
C11 H14 89F sing 39 n n 
C13 H15 89F sing 40 n n 
C14 H16 89F sing 41 n n 
C14 H17 89F sing 42 n n 
C15 H18 89F sing 43 n n 
C16 H19 89F sing 44 n n 
C17 H20 89F sing 45 n n 
C17 H21 89F sing 46 n n 
C18 H22 89F sing 47 n n 
C18 H23 89F sing 48 n n 
C19 H24 89F sing 49 n n 
C20 H25 89F sing 50 n n 
C20 H26 89F sing 51 n n 
#
_atom_sites.entry_id                     5V54 
_atom_sites.fract_transf_matrix[1][1]    0.004252 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002875 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.020479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008671 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 89F A 1 1201 900 89F MPN . 
D 2 89F B 1 1201 900 89F MPN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 89F . . . D 2 -11.052 1.71 21.826 1 122.98 ? C7 89F 1201 B 1 
HETATM 2 C C6 89F . . . D 2 -8.258 0.816 22.426 1 158.97 ? C6 89F 1201 B 1 
HETATM 3 C C10 89F . . . D 2 -10.46 0.504 21.309 1 138.42 ? C10 89F 1201 B 1 
HETATM 4 C C9 89F . . . D 2 -7.682 0.105 24.786 1 144.63 ? C9 89F 1201 B 1 
HETATM 5 C C4 89F . . . D 2 -8.912 0.978 26.672 1 163.05 ? C4 89F 1201 B 1 
HETATM 6 C C2 89F . . . D 2 -8.474 0.872 23.913 1 185.21 ? C2 89F 1201 B 1 
HETATM 7 N N1 89F . . . D 2 -6.858 0.392 22.166 1 228.37 ? N1 89F 1201 B 1 
HETATM 8 N N2 89F . . . D 2 -4.381 0.214 20.677 1 162.62 ? N2 89F 1201 B 1 
HETATM 9 C C1 89F . . . D 2 -9.465 1.675 24.409 1 221.03 ? C1 89F 1201 B 1 
HETATM 10 C C3 89F . . . D 2 -9.688 1.734 25.796 1 197.77 ? C3 89F 1201 B 1 
HETATM 11 C C5 89F . . . D 2 -2.984 -0.279 20.641 1 152.07 ? C5 89F 1201 B 1 
HETATM 12 C C8 89F . . . D 2 -8.139 -1.182 28.576 1 196.9 ? C8 89F 1201 B 1 
HETATM 13 C C11 89F . . . D 2 -4.544 1.137 21.815 1 223.97 ? C11 89F 1201 B 1 
HETATM 14 C C12 89F . . . D 2 -7.905 0.16 26.166 1 142.19 ? C12 89F 1201 B 1 
HETATM 15 C C13 89F . . . D 2 -12.16 2.226 21.152 1 99.24 ? C13 89F 1201 B 1 
HETATM 16 C C14 89F . . . D 2 -6.77 -0.448 20.975 1 250.26 ? C14 89F 1201 B 1 
HETATM 17 C C15 89F . . . D 2 -12.682 1.611 20.026 1 98.48 ? C15 89F 1201 B 1 
HETATM 18 C C16 89F . . . D 2 -11.008 -0.093 20.169 1 118.19 ? C16 89F 1201 B 1 
HETATM 19 C C17 89F . . . D 2 -6.004 1.563 21.98 1 215.78 ? C17 89F 1201 B 1 
HETATM 20 C C18 89F . . . D 2 -5.325 -0.921 20.756 1 210.08 ? C18 89F 1201 B 1 
HETATM 21 C C19 89F . . . D 2 -12.109 0.456 19.535 1 92.69 ? C19 89F 1201 B 1 
HETATM 22 C C20 89F . . . D 2 -9.241 -0.187 21.909 1 222.25 ? C20 89F 1201 B 1 
HETATM 23 S S1 89F . . . D 2 -6.869 -0.819 27.306 1 227.68 ? S1 89F 1201 B 1 
HETATM 24 S S2 89F . . . D 2 -10.565 2.684 23.347 1 233.72 ? S2 89F 1201 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           329 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           24 
#