data_5V56 # _model_server_result.job_id zAtKfOBK7IR5hI6cWnZuyg _model_server_result.datetime_utc '2024-10-19 08:28:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1201}' # _entry.id 5V56 # _exptl.entry_id 5V56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.509 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-N-[1-[4-(2-methylpyrazol-3-yl)phthalazin-1-yl]piperidin-4-yl]-4-nitro-2-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.1 _cell.angle_gamma 90 _cell.entry_id 5V56 _cell.length_a 40.59 _cell.length_b 349.54 _cell.length_c 61.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 64 1_555 A SG CYS 126 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 18 A CYS 70 1_555 A SG CYS 82 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 26 A CYS 78 1_555 A SG CYS 75 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 66 A CYS 118 1_555 A SG CYS 102 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 95 A CYS 147 1_555 A SG CYS 117 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 141 A CYS 193 1_555 A SG CYS 161 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 165 A CYS 217 1_555 A SG CYS 243 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 262 A CYS 314 1_555 A SG CYS 338 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 A SG CYS 575 A CYS 490 1_555 A SG CYS 592 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 B SG CYS 12 B CYS 64 1_555 B SG CYS 126 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 B SG CYS 18 B CYS 70 1_555 B SG CYS 82 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 B SG CYS 26 B CYS 78 1_555 B SG CYS 75 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 B SG CYS 66 B CYS 118 1_555 B SG CYS 102 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 B SG CYS 95 B CYS 147 1_555 B SG CYS 117 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 B SG CYS 141 B CYS 193 1_555 B SG CYS 161 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 B SG CYS 165 B CYS 217 1_555 B SG CYS 243 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf17 B SG CYS 262 B CYS 314 1_555 B SG CYS 338 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf18 B SG CYS 575 B CYS 490 1_555 B SG CYS 592 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 578 A ASN 493 1_555 E C1 NAG . A NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C26 H24 F3 N7 O3' _chem_comp.formula_weight 539.509 _chem_comp.id 836 _chem_comp.mon_nstd_flag . _chem_comp.name N-methyl-N-[1-[4-(2-methylpyrazol-3-yl)phthalazin-1-yl]piperidin-4-yl]-4-nitro-2-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F3 C4 836 sing 1 n n F4 C4 836 sing 2 n n F2 C4 836 sing 3 n n C4 C3 836 sing 4 n n C14 C13 836 sing 5 n n C14 C10 836 sing 6 n n C13 N2 836 sing 7 n n C3 C2 836 doub 8 n y C3 C5 836 sing 9 n y C2 C1 836 sing 10 n y O2 N1 836 doub 11 n n C10 N01 836 sing 12 n n C10 C11 836 sing 13 n n O1 C8 836 doub 14 n n N01 C9 836 sing 15 n n N01 C8 836 sing 16 n n C8 C5 836 sing 17 n n C5 C6 836 doub 18 n y N2 C15 836 sing 19 n n N2 C12 836 sing 20 n n N4 C15 836 doub 21 n y N4 N3 836 sing 22 n y C1 N1 836 sing 23 n n C1 C7 836 doub 24 n y N1 O3 836 sing 25 n n C15 C16 836 sing 26 n y N3 C22 836 doub 27 n y C24 C25 836 sing 28 n y C24 C23 836 doub 29 n y C12 C11 836 sing 30 n n C25 N5 836 doub 31 n y C6 C7 836 sing 32 n y C16 C21 836 doub 33 n y C16 C17 836 sing 34 n y C22 C23 836 sing 35 n n C22 C17 836 sing 36 n y C23 N6 836 sing 37 n y C21 C20 836 sing 38 n y C17 C18 836 doub 39 n y N5 N6 836 sing 40 n y N6 C26 836 sing 41 n n C20 C19 836 doub 42 n y C18 C19 836 sing 43 n y C6 H1 836 sing 44 n n C7 H2 836 sing 45 n n C10 H3 836 sing 46 n n C13 H4 836 sing 47 n n C13 H5 836 sing 48 n n C20 H6 836 sing 49 n n C21 H7 836 sing 50 n n C24 H8 836 sing 51 n n C26 H9 836 sing 52 n n C26 H10 836 sing 53 n n C26 H11 836 sing 54 n n C11 H12 836 sing 55 n n C11 H13 836 sing 56 n n C12 H14 836 sing 57 n n C12 H15 836 sing 58 n n C14 H16 836 sing 59 n n C14 H17 836 sing 60 n n C18 H18 836 sing 61 n n C19 H19 836 sing 62 n n C2 H20 836 sing 63 n n C25 H21 836 sing 64 n n C9 H22 836 sing 65 n n C9 H23 836 sing 66 n n C9 H24 836 sing 67 n n # _atom_sites.entry_id 5V56 _atom_sites.fract_transf_matrix[1][1] 0.024637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004834 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 836 A 1 1201 1699 836 LIG . D 3 FMN A 1 1202 1700 FMN FMN . E 4 NAG A 1 1203 1800 NAG NAG . F 2 836 B 1 1201 1699 836 LIG . G 3 FMN B 1 1202 1700 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 836 . . . C 2 59.864 112.816 58.584 1 99.24 ? N1 836 1201 A 1 HETATM 2 N N3 836 . . . C 2 53.369 102.062 58.344 1 89.29 ? N3 836 1201 A 1 HETATM 3 C C4 836 . . . C 2 56.595 110.807 55.294 1 100.75 ? C4 836 1201 A 1 HETATM 4 C C5 836 . . . C 2 56.109 110.813 57.946 1 94.04 ? C5 836 1201 A 1 HETATM 5 C C6 836 . . . C 2 56.493 111.072 59.188 1 93.47 ? C6 836 1201 A 1 HETATM 6 C C7 836 . . . C 2 57.829 111.783 59.419 1 97.71 ? C7 836 1201 A 1 HETATM 7 C C8 836 . . . C 2 54.862 109.953 57.745 1 92.03 ? C8 836 1201 A 1 HETATM 8 C C10 836 . . . C 2 53.855 107.685 57.581 1 85.24 ? C10 836 1201 A 1 HETATM 9 C C13 836 . . . C 2 52.75 105.646 56.521 1 84.79 ? C13 836 1201 A 1 HETATM 10 C C15 836 . . . C 2 52.243 104.092 58.361 1 88.2 ? C15 836 1201 A 1 HETATM 11 C C17 836 . . . C 2 51.305 102.188 59.527 1 93.03 ? C17 836 1201 A 1 HETATM 12 C C20 836 . . . C 2 49.123 103.766 60.374 1 91.94 ? C20 836 1201 A 1 HETATM 13 C C21 836 . . . C 2 50.118 104.306 59.571 1 90.77 ? C21 836 1201 A 1 HETATM 14 C C22 836 . . . C 2 52.442 101.463 59.077 1 92.78 ? C22 836 1201 A 1 HETATM 15 C C24 836 . . . C 2 51.83 99.011 58.708 1 98.96 ? C24 836 1201 A 1 HETATM 16 C C26 836 . . . C 2 54.521 99.953 60.846 1 97.18 ? C26 836 1201 A 1 HETATM 17 N N01 836 . . . C 2 55.028 108.489 57.749 1 87.92 ? N01 836 1201 A 1 HETATM 18 C C1 836 . . . C 2 58.599 112.124 58.383 1 99.78 ? C1 836 1201 A 1 HETATM 19 O O1 836 . . . C 2 53.795 110.457 57.562 1 91.45 ? O1 836 1201 A 1 HETATM 20 C C11 836 . . . C 2 53.295 107.295 58.949 1 81.73 ? C11 836 1201 A 1 HETATM 21 C C12 836 . . . C 2 52.017 106.545 58.748 1 81.74 ? C12 836 1201 A 1 HETATM 22 C C14 836 . . . C 2 54.051 106.496 56.575 1 85.44 ? C14 836 1201 A 1 HETATM 23 C C16 836 . . . C 2 51.21 103.543 59.136 1 90.67 ? C16 836 1201 A 1 HETATM 24 C C18 836 . . . C 2 50.304 101.664 60.346 1 94.89 ? C18 836 1201 A 1 HETATM 25 C C19 836 . . . C 2 49.222 102.44 60.765 1 94.41 ? C19 836 1201 A 1 HETATM 26 O O2 836 . . . C 2 60.545 113.069 57.657 1 100.84 ? O2 836 1201 A 1 HETATM 27 C C2 836 . . . C 2 58.16 111.779 56.951 1 100.09 ? C2 836 1201 A 1 HETATM 28 F F2 836 . . . C 2 56.49 109.467 55.12 1 104.26 ? F2 836 1201 A 1 HETATM 29 N N2 836 . . . C 2 52.199 105.45 57.849 1 84.75 ? N2 836 1201 A 1 HETATM 30 C C23 836 . . . C 2 52.591 99.951 59.283 1 96.41 ? C23 836 1201 A 1 HETATM 31 C C25 836 . . . C 2 52.308 97.711 59.158 1 100.29 ? C25 836 1201 A 1 HETATM 32 O O3 836 . . . C 2 60.222 113.114 59.664 1 97.64 ? O3 836 1201 A 1 HETATM 33 C C3 836 . . . C 2 57.01 111.155 56.736 1 98.74 ? C3 836 1201 A 1 HETATM 34 F F3 836 . . . C 2 57.52 111.245 54.402 1 101.76 ? F3 836 1201 A 1 HETATM 35 F F4 836 . . . C 2 55.385 111.35 54.991 1 98.97 ? F4 836 1201 A 1 HETATM 36 N N4 836 . . . C 2 53.248 103.346 57.973 1 87.6 ? N4 836 1201 A 1 HETATM 37 N N5 836 . . . C 2 53.407 97.924 60.015 1 99.27 ? N5 836 1201 A 1 HETATM 38 N N6 836 . . . C 2 53.524 99.302 60.035 1 97.21 ? N6 836 1201 A 1 HETATM 39 C C9 836 . . . C 2 56.322 107.834 57.961 1 85.21 ? C9 836 1201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #