data_5V56 # _model_server_result.job_id DumpCMS8uqGbv3mhvnRY0w _model_server_result.datetime_utc '2024-10-19 08:21:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1201}' # _entry.id 5V56 # _exptl.entry_id 5V56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.509 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-methyl-N-[1-[4-(2-methylpyrazol-3-yl)phthalazin-1-yl]piperidin-4-yl]-4-nitro-2-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.1 _cell.angle_gamma 90 _cell.entry_id 5V56 _cell.length_a 40.59 _cell.length_b 349.54 _cell.length_c 61.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 12 A CYS 64 1_555 A SG CYS 126 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 18 A CYS 70 1_555 A SG CYS 82 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 A SG CYS 26 A CYS 78 1_555 A SG CYS 75 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 A SG CYS 66 A CYS 118 1_555 A SG CYS 102 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 95 A CYS 147 1_555 A SG CYS 117 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 141 A CYS 193 1_555 A SG CYS 161 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 165 A CYS 217 1_555 A SG CYS 243 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 A SG CYS 262 A CYS 314 1_555 A SG CYS 338 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 A SG CYS 575 A CYS 490 1_555 A SG CYS 592 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 B SG CYS 12 B CYS 64 1_555 B SG CYS 126 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 B SG CYS 18 B CYS 70 1_555 B SG CYS 82 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 B SG CYS 26 B CYS 78 1_555 B SG CYS 75 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 B SG CYS 66 B CYS 118 1_555 B SG CYS 102 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 B SG CYS 95 B CYS 147 1_555 B SG CYS 117 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf15 B SG CYS 141 B CYS 193 1_555 B SG CYS 161 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf16 B SG CYS 165 B CYS 217 1_555 B SG CYS 243 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf17 B SG CYS 262 B CYS 314 1_555 B SG CYS 338 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf18 B SG CYS 575 B CYS 490 1_555 B SG CYS 592 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 578 A ASN 493 1_555 E C1 NAG . A NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C26 H24 F3 N7 O3' _chem_comp.formula_weight 539.509 _chem_comp.id 836 _chem_comp.mon_nstd_flag . _chem_comp.name N-methyl-N-[1-[4-(2-methylpyrazol-3-yl)phthalazin-1-yl]piperidin-4-yl]-4-nitro-2-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F3 C4 836 sing 1 n n F4 C4 836 sing 2 n n F2 C4 836 sing 3 n n C4 C3 836 sing 4 n n C14 C13 836 sing 5 n n C14 C10 836 sing 6 n n C13 N2 836 sing 7 n n C3 C2 836 doub 8 n y C3 C5 836 sing 9 n y C2 C1 836 sing 10 n y O2 N1 836 doub 11 n n C10 N01 836 sing 12 n n C10 C11 836 sing 13 n n O1 C8 836 doub 14 n n N01 C9 836 sing 15 n n N01 C8 836 sing 16 n n C8 C5 836 sing 17 n n C5 C6 836 doub 18 n y N2 C15 836 sing 19 n n N2 C12 836 sing 20 n n N4 C15 836 doub 21 n y N4 N3 836 sing 22 n y C1 N1 836 sing 23 n n C1 C7 836 doub 24 n y N1 O3 836 sing 25 n n C15 C16 836 sing 26 n y N3 C22 836 doub 27 n y C24 C25 836 sing 28 n y C24 C23 836 doub 29 n y C12 C11 836 sing 30 n n C25 N5 836 doub 31 n y C6 C7 836 sing 32 n y C16 C21 836 doub 33 n y C16 C17 836 sing 34 n y C22 C23 836 sing 35 n n C22 C17 836 sing 36 n y C23 N6 836 sing 37 n y C21 C20 836 sing 38 n y C17 C18 836 doub 39 n y N5 N6 836 sing 40 n y N6 C26 836 sing 41 n n C20 C19 836 doub 42 n y C18 C19 836 sing 43 n y C6 H1 836 sing 44 n n C7 H2 836 sing 45 n n C10 H3 836 sing 46 n n C13 H4 836 sing 47 n n C13 H5 836 sing 48 n n C20 H6 836 sing 49 n n C21 H7 836 sing 50 n n C24 H8 836 sing 51 n n C26 H9 836 sing 52 n n C26 H10 836 sing 53 n n C26 H11 836 sing 54 n n C11 H12 836 sing 55 n n C11 H13 836 sing 56 n n C12 H14 836 sing 57 n n C12 H15 836 sing 58 n n C14 H16 836 sing 59 n n C14 H17 836 sing 60 n n C18 H18 836 sing 61 n n C19 H19 836 sing 62 n n C2 H20 836 sing 63 n n C25 H21 836 sing 64 n n C9 H22 836 sing 65 n n C9 H23 836 sing 66 n n C9 H24 836 sing 67 n n # _atom_sites.entry_id 5V56 _atom_sites.fract_transf_matrix[1][1] 0.024637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004834 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 836 A 1 1201 1699 836 LIG . D 3 FMN A 1 1202 1700 FMN FMN . E 4 NAG A 1 1203 1800 NAG NAG . F 2 836 B 1 1201 1699 836 LIG . G 3 FMN B 1 1202 1700 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 836 . . . F 2 -8.514 -16.702 81.777 1 112.65 ? N1 836 1201 B 1 HETATM 2 N N3 836 . . . F 2 -2.208 -6.011 83.147 1 102.88 ? N3 836 1201 B 1 HETATM 3 C C4 836 . . . F 2 -4.241 -14.808 79.701 1 108.88 ? C4 836 1201 B 1 HETATM 4 C C5 836 . . . F 2 -4.951 -14.357 82.194 1 103.39 ? C5 836 1201 B 1 HETATM 5 C C6 836 . . . F 2 -5.747 -14.546 83.229 1 104.08 ? C6 836 1201 B 1 HETATM 6 C C7 836 . . . F 2 -7.012 -15.38 83.068 1 105.81 ? C7 836 1201 B 1 HETATM 7 C C8 836 . . . F 2 -3.663 -13.574 82.434 1 100.54 ? C8 836 1201 B 1 HETATM 8 C C10 836 . . . F 2 -2.288 -11.488 82.589 1 96.49 ? C10 836 1201 B 1 HETATM 9 C C13 836 . . . F 2 -1.044 -10.208 84.462 1 97.05 ? C13 836 1201 B 1 HETATM 10 C C15 836 . . . F 2 -0.823 -7.831 83.594 1 103.62 ? C15 836 1201 B 1 HETATM 11 C C17 836 . . . F 2 -0.603 -5.776 84.882 1 108.85 ? C17 836 1201 B 1 HETATM 12 C C20 836 . . . F 2 1.498 -6.899 86.387 1 111.08 ? C20 836 1201 B 1 HETATM 13 C C21 836 . . . F 2 0.886 -7.63 85.367 1 110.66 ? C21 836 1201 B 1 HETATM 14 C C22 836 . . . F 2 -1.653 -5.251 84.082 1 106.87 ? C22 836 1201 B 1 HETATM 15 C C24 836 . . . F 2 -0.953 -3.006 83.125 1 107.86 ? C24 836 1201 B 1 HETATM 16 C C26 836 . . . F 2 -3.862 -3.268 85.211 1 106.31 ? C26 836 1201 B 1 HETATM 17 N N01 836 . . . F 2 -3.555 -12.111 82.261 1 98.26 ? N01 836 1201 B 1 HETATM 18 C C1 836 . . . F 2 -7.287 -15.935 81.901 1 108.36 ? C1 836 1201 B 1 HETATM 19 O O1 836 . . . F 2 -2.731 -14.241 82.737 1 99.04 ? O1 836 1201 B 1 HETATM 20 C C11 836 . . . F 2 -1.773 -10.443 81.595 1 96.51 ? C11 836 1201 B 1 HETATM 21 C C12 836 . . . F 2 -0.504 -9.783 82.087 1 97.91 ? C12 836 1201 B 1 HETATM 22 C C14 836 . . . F 2 -2.326 -10.995 84.078 1 95.84 ? C14 836 1201 B 1 HETATM 23 C C16 836 . . . F 2 -0.162 -7.094 84.597 1 108.21 ? C16 836 1201 B 1 HETATM 24 C C18 836 . . . F 2 0.015 -5.06 85.914 1 110.41 ? C18 836 1201 B 1 HETATM 25 C C19 836 . . . F 2 1.057 -5.61 86.659 1 110.83 ? C19 836 1201 B 1 HETATM 26 O O2 836 . . . F 2 -8.799 -17.206 80.75 1 114.44 ? O2 836 1201 B 1 HETATM 27 C C2 836 . . . F 2 -6.35 -15.729 80.697 1 106.68 ? C2 836 1201 B 1 HETATM 28 F F2 836 . . . F 2 -3.886 -13.507 79.515 1 110.85 ? F2 836 1201 B 1 HETATM 29 N N2 836 . . . F 2 -0.654 -9.279 83.41 1 99.8 ? N2 836 1201 B 1 HETATM 30 C C23 836 . . . F 2 -1.789 -3.734 83.874 1 107.83 ? C23 836 1201 B 1 HETATM 31 C C25 836 . . . F 2 -1.421 -1.633 83.155 1 109.21 ? C25 836 1201 B 1 HETATM 32 O O3 836 . . . F 2 -9.237 -16.809 82.707 1 113.38 ? O3 836 1201 B 1 HETATM 33 C C3 836 . . . F 2 -5.263 -14.98 80.83 1 106.14 ? C3 836 1201 B 1 HETATM 34 F F3 836 . . . F 2 -4.701 -15.266 78.509 1 109.89 ? F3 836 1201 B 1 HETATM 35 F F4 836 . . . F 2 -3.133 -15.5 80.075 1 109.01 ? F4 836 1201 B 1 HETATM 36 N N4 836 . . . F 2 -1.743 -7.238 82.873 1 102.11 ? N4 836 1201 B 1 HETATM 37 N N5 836 . . . F 2 -2.593 -1.579 83.939 1 109.28 ? N5 836 1201 B 1 HETATM 38 N N6 836 . . . F 2 -2.757 -2.89 84.351 1 107.7 ? N6 836 1201 B 1 HETATM 39 C C9 836 . . . F 2 -4.712 -11.296 81.868 1 96.8 ? C9 836 1201 B 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #