data_5V56
#
_model_server_result.job_id            TO_7g5Mlm3IbCoOzvQvUkg 
_model_server_result.datetime_utc      '2024-10-19 08:41:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v56 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1202}' 
#
_entry.id    5V56 
#
_exptl.entry_id    5V56 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.1 
_cell.angle_gamma         90 
_cell.entry_id            5V56 
_cell.length_a            40.59 
_cell.length_b            349.54 
_cell.length_c            61.76 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V56 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 12 A CYS 64 1_555 A SG CYS 126 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 18 A CYS 70 1_555 A SG CYS 82 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 26 A CYS 78 1_555 A SG CYS 75 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf4 A SG CYS 66 A CYS 118 1_555 A SG CYS 102 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 A SG CYS 95 A CYS 147 1_555 A SG CYS 117 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 A SG CYS 141 A CYS 193 1_555 A SG CYS 161 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 A SG CYS 165 A CYS 217 1_555 A SG CYS 243 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf8 A SG CYS 262 A CYS 314 1_555 A SG CYS 338 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 A SG CYS 575 A CYS 490 1_555 A SG CYS 592 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf10 B SG CYS 12 B CYS 64 1_555 B SG CYS 126 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 B SG CYS 18 B CYS 70 1_555 B SG CYS 82 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf12 B SG CYS 26 B CYS 78 1_555 B SG CYS 75 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf13 B SG CYS 66 B CYS 118 1_555 B SG CYS 102 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf14 B SG CYS 95 B CYS 147 1_555 B SG CYS 117 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf15 B SG CYS 141 B CYS 193 1_555 B SG CYS 161 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf16 B SG CYS 165 B CYS 217 1_555 B SG CYS 243 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf17 B SG CYS 262 B CYS 314 1_555 B SG CYS 338 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf18 B SG CYS 575 B CYS 490 1_555 B SG CYS 592 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
covale ? covale1 A ND2 ASN 578 A ASN 493 1_555 E C1 NAG . A NAG 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 150 n n 
N1 C10 FMN doub 151 n n 
C2 O2 FMN doub 152 n n 
C2 N3 FMN sing 153 n n 
N3 C4 FMN sing 154 n n 
N3 HN3 FMN sing 155 n n 
C4 O4 FMN doub 156 n n 
C4 C4A FMN sing 157 n n 
C4A N5 FMN doub 158 n n 
C4A C10 FMN sing 159 n n 
N5 C5A FMN sing 160 n n 
C5A C6 FMN doub 161 n y 
C5A C9A FMN sing 162 n y 
C6 C7 FMN sing 163 n y 
C6 H6 FMN sing 164 n n 
C7 C7M FMN sing 165 n n 
C7 C8 FMN doub 166 n y 
C7M HM71 FMN sing 167 n n 
C7M HM72 FMN sing 168 n n 
C7M HM73 FMN sing 169 n n 
C8 C8M FMN sing 170 n n 
C8 C9 FMN sing 171 n y 
C8M HM81 FMN sing 172 n n 
C8M HM82 FMN sing 173 n n 
C8M HM83 FMN sing 174 n n 
C9 C9A FMN doub 175 n y 
C9 H9 FMN sing 176 n n 
C9A N10 FMN sing 177 n n 
N10 C10 FMN sing 178 n n 
N10 C1' FMN sing 179 n n 
C1' C2' FMN sing 180 n n 
C1' "H1'1" FMN sing 181 n n 
C1' "H1'2" FMN sing 182 n n 
C2' O2' FMN sing 183 n n 
C2' C3' FMN sing 184 n n 
C2' H2' FMN sing 185 n n 
O2' HO2' FMN sing 186 n n 
C3' O3' FMN sing 187 n n 
C3' C4' FMN sing 188 n n 
C3' H3' FMN sing 189 n n 
O3' HO3' FMN sing 190 n n 
C4' O4' FMN sing 191 n n 
C4' C5' FMN sing 192 n n 
C4' H4' FMN sing 193 n n 
O4' HO4' FMN sing 194 n n 
C5' O5' FMN sing 195 n n 
C5' "H5'1" FMN sing 196 n n 
C5' "H5'2" FMN sing 197 n n 
O5' P FMN sing 198 n n 
P O1P FMN doub 199 n n 
P O2P FMN sing 200 n n 
P O3P FMN sing 201 n n 
O2P HOP2 FMN sing 202 n n 
O3P HOP3 FMN sing 203 n n 
#
_atom_sites.entry_id                     5V56 
_atom_sites.fract_transf_matrix[1][1]    0.024637 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004834 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002861 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.0165 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 836 A 1 1201 1699 836 LIG . 
D 3 FMN A 1 1202 1700 FMN FMN . 
E 4 NAG A 1 1203 1800 NAG NAG . 
F 2 836 B 1 1201 1699 836 LIG . 
G 3 FMN B 1 1202 1700 FMN FMN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 3 13.921 46.205 44.112 1 60.18 ? N1 FMN 1202 A 1 
HETATM 2 C C2 FMN . . . D 3 14.346 46.382 45.418 1 60.43 ? C2 FMN 1202 A 1 
HETATM 3 O O2 FMN . . . D 3 14.704 47.493 45.854 1 61.24 ? O2 FMN 1202 A 1 
HETATM 4 N N3 FMN . . . D 3 14.32 45.329 46.301 1 61.97 ? N3 FMN 1202 A 1 
HETATM 5 C C4 FMN . . . D 3 13.867 44.052 46.03 1 69.7 ? C4 FMN 1202 A 1 
HETATM 6 O O4 FMN . . . D 3 13.921 43.182 46.899 1 77.13 ? O4 FMN 1202 A 1 
HETATM 7 C C4A FMN . . . D 3 13.376 43.86 44.665 1 68.36 ? C4A FMN 1202 A 1 
HETATM 8 N N5 FMN . . . D 3 12.912 42.68 44.335 1 68 ? N5 FMN 1202 A 1 
HETATM 9 C C5A FMN . . . D 3 12.451 42.496 43.028 1 72.08 ? C5A FMN 1202 A 1 
HETATM 10 C C6 FMN . . . D 3 12.016 41.223 42.66 1 75.75 ? C6 FMN 1202 A 1 
HETATM 11 C C7 FMN . . . D 3 11.529 40.975 41.379 1 73.68 ? C7 FMN 1202 A 1 
HETATM 12 C C7M FMN . . . D 3 11.252 39.548 40.972 1 73.33 ? C7M FMN 1202 A 1 
HETATM 13 C C8 FMN . . . D 3 11.412 42.045 40.459 1 68.94 ? C8 FMN 1202 A 1 
HETATM 14 C C8M FMN . . . D 3 10.736 41.847 39.127 1 68.74 ? C8M FMN 1202 A 1 
HETATM 15 C C9 FMN . . . D 3 11.885 43.311 40.81 1 65.03 ? C9 FMN 1202 A 1 
HETATM 16 C C9A FMN . . . D 3 12.434 43.542 42.074 1 69.5 ? C9A FMN 1202 A 1 
HETATM 17 N N10 FMN . . . D 3 12.992 44.802 42.451 1 71.61 ? N10 FMN 1202 A 1 
HETATM 18 C C10 FMN . . . D 3 13.454 45.013 43.754 1 65.7 ? C10 FMN 1202 A 1 
HETATM 19 C C1' FMN . . . D 3 13.163 45.855 41.433 1 79.51 ? C1' FMN 1202 A 1 
HETATM 20 C C2' FMN . . . D 3 14.505 45.826 40.703 1 85.34 ? C2' FMN 1202 A 1 
HETATM 21 O O2' FMN . . . D 3 15.588 45.804 41.636 1 84.52 ? O2' FMN 1202 A 1 
HETATM 22 C C3' FMN . . . D 3 14.646 47.074 39.825 1 90.4 ? C3' FMN 1202 A 1 
HETATM 23 O O3' FMN . . . D 3 13.729 46.993 38.738 1 93.03 ? O3' FMN 1202 A 1 
HETATM 24 C C4' FMN . . . D 3 16.05 47.389 39.297 1 90.51 ? C4' FMN 1202 A 1 
HETATM 25 O O4' FMN . . . D 3 16.126 48.741 38.832 1 87.73 ? O4' FMN 1202 A 1 
HETATM 26 C C5' FMN . . . D 3 16.562 46.402 38.264 1 92.57 ? C5' FMN 1202 A 1 
HETATM 27 O O5' FMN . . . D 3 17.986 46.6 38.078 1 90.64 ? O5' FMN 1202 A 1 
HETATM 28 P P FMN . . . D 3 18.845 46.256 36.749 1 78.75 ? P FMN 1202 A 1 
HETATM 29 O O1P FMN . . . D 3 18.195 46.991 35.607 1 72.72 ? O1P FMN 1202 A 1 
HETATM 30 O O2P FMN . . . D 3 20.214 46.773 37.106 1 82.09 ? O2P FMN 1202 A 1 
HETATM 31 O O3P FMN . . . D 3 18.888 44.722 36.638 1 66.18 ? O3P FMN 1202 A 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           346 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#