data_5V57
#
_model_server_result.job_id            QOxQuDyj4qqHxyvlcQ_nnQ 
_model_server_result.datetime_utc      '2025-02-26 23:38:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v57 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1202}' 
#
_entry.id    5V57 
#
_exptl.entry_id    5V57 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.79 
_cell.angle_gamma         90 
_cell.entry_id            5V57 
_cell.length_a            40.08 
_cell.length_b            356.36 
_cell.length_c            59.09 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V57 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 64 1_555 A SG CYS 121 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf2 A SG CYS 13 A CYS 70 1_555 A SG CYS 77 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf3 A SG CYS 21 A CYS 78 1_555 A SG CYS 70 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 61 A CYS 118 1_555 A SG CYS 97 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 A SG CYS 90 A CYS 147 1_555 A SG CYS 112 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf6 A SG CYS 136 A CYS 193 1_555 A SG CYS 156 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 A SG CYS 160 A CYS 217 1_555 A SG CYS 238 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf8 A SG CYS 257 A CYS 314 1_555 A SG CYS 333 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 A SG CYS 570 A CYS 490 1_555 A SG CYS 587 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 B SG CYS 7 B CYS 64 1_555 B SG CYS 121 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf11 B SG CYS 13 B CYS 70 1_555 B SG CYS 77 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf12 B SG CYS 21 B CYS 78 1_555 B SG CYS 70 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf13 B SG CYS 61 B CYS 118 1_555 B SG CYS 97 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf14 B SG CYS 90 B CYS 147 1_555 B SG CYS 112 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf15 B SG CYS 136 B CYS 193 1_555 B SG CYS 156 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf16 B SG CYS 160 B CYS 217 1_555 B SG CYS 238 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf17 B SG CYS 257 B CYS 314 1_555 B SG CYS 333 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf18 B SG CYS 570 B CYS 490 1_555 B SG CYS 587 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 150 n n 
N1 C10 FMN doub 151 n n 
C2 O2 FMN doub 152 n n 
C2 N3 FMN sing 153 n n 
N3 C4 FMN sing 154 n n 
N3 HN3 FMN sing 155 n n 
C4 O4 FMN doub 156 n n 
C4 C4A FMN sing 157 n n 
C4A N5 FMN doub 158 n n 
C4A C10 FMN sing 159 n n 
N5 C5A FMN sing 160 n n 
C5A C6 FMN doub 161 n y 
C5A C9A FMN sing 162 n y 
C6 C7 FMN sing 163 n y 
C6 H6 FMN sing 164 n n 
C7 C7M FMN sing 165 n n 
C7 C8 FMN doub 166 n y 
C7M HM71 FMN sing 167 n n 
C7M HM72 FMN sing 168 n n 
C7M HM73 FMN sing 169 n n 
C8 C8M FMN sing 170 n n 
C8 C9 FMN sing 171 n y 
C8M HM81 FMN sing 172 n n 
C8M HM82 FMN sing 173 n n 
C8M HM83 FMN sing 174 n n 
C9 C9A FMN doub 175 n y 
C9 H9 FMN sing 176 n n 
C9A N10 FMN sing 177 n n 
N10 C10 FMN sing 178 n n 
N10 C1' FMN sing 179 n n 
C1' C2' FMN sing 180 n n 
C1' "H1'1" FMN sing 181 n n 
C1' "H1'2" FMN sing 182 n n 
C2' O2' FMN sing 183 n n 
C2' C3' FMN sing 184 n n 
C2' H2' FMN sing 185 n n 
O2' HO2' FMN sing 186 n n 
C3' O3' FMN sing 187 n n 
C3' C4' FMN sing 188 n n 
C3' H3' FMN sing 189 n n 
O3' HO3' FMN sing 190 n n 
C4' O4' FMN sing 191 n n 
C4' C5' FMN sing 192 n n 
C4' H4' FMN sing 193 n n 
O4' HO4' FMN sing 194 n n 
C5' O5' FMN sing 195 n n 
C5' "H5'1" FMN sing 196 n n 
C5' "H5'2" FMN sing 197 n n 
O5' P FMN sing 198 n n 
P O1P FMN doub 199 n n 
P O2P FMN sing 200 n n 
P O3P FMN sing 201 n n 
O2P HOP2 FMN sing 202 n n 
O3P HOP3 FMN sing 203 n n 
#
_atom_sites.entry_id                     5V57 
_atom_sites.fract_transf_matrix[1][1]    0.02495 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005664 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.002806 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017354 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 836 A 1 1201 1799 836 LIG . 
D 3 FMN A 1 1202 1800 FMN FMN . 
E 2 836 B 1 1201 1799 836 LIG . 
F 3 FMN B 1 1202 1800 FMN FMN . 
G 4 OLC B 1 1203 1801 OLC OLC . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . D 3 -81.246 -57.152 13.726 1 50.89 ? N1 FMN 1202 A 1 
HETATM 2 C C2 FMN . . . D 3 -80.931 -56.987 15.056 1 50.71 ? C2 FMN 1202 A 1 
HETATM 3 O O2 FMN . . . D 3 -80.553 -55.893 15.494 1 49.38 ? O2 FMN 1202 A 1 
HETATM 4 N N3 FMN . . . D 3 -81.003 -58.081 15.936 1 51.1 ? N3 FMN 1202 A 1 
HETATM 5 C C4 FMN . . . D 3 -81.359 -59.376 15.597 1 51.17 ? C4 FMN 1202 A 1 
HETATM 6 O O4 FMN . . . D 3 -81.386 -60.26 16.458 1 50.32 ? O4 FMN 1202 A 1 
HETATM 7 C C4A FMN . . . D 3 -81.683 -59.548 14.161 1 50.98 ? C4A FMN 1202 A 1 
HETATM 8 N N5 FMN . . . D 3 -82.062 -60.729 13.75 1 50.79 ? N5 FMN 1202 A 1 
HETATM 9 C C5A FMN . . . D 3 -82.483 -60.862 12.428 1 50.73 ? C5A FMN 1202 A 1 
HETATM 10 C C6 FMN . . . D 3 -83.007 -62.09 12.015 1 50.34 ? C6 FMN 1202 A 1 
HETATM 11 C C7 FMN . . . D 3 -83.576 -62.24 10.753 1 49.2 ? C7 FMN 1202 A 1 
HETATM 12 C C7M FMN . . . D 3 -84.02 -63.609 10.304 1 49.16 ? C7M FMN 1202 A 1 
HETATM 13 C C8 FMN . . . D 3 -83.652 -61.127 9.889 1 48.12 ? C8 FMN 1202 A 1 
HETATM 14 C C8M FMN . . . D 3 -84.405 -61.196 8.587 1 48.2 ? C8M FMN 1202 A 1 
HETATM 15 C C9 FMN . . . D 3 -83.077 -59.92 10.277 1 49.56 ? C9 FMN 1202 A 1 
HETATM 16 C C9A FMN . . . D 3 -82.485 -59.778 11.531 1 50.48 ? C9A FMN 1202 A 1 
HETATM 17 N N10 FMN . . . D 3 -81.981 -58.532 11.988 1 50.5 ? N10 FMN 1202 A 1 
HETATM 18 C C10 FMN . . . D 3 -81.603 -58.363 13.307 1 50.14 ? C10 FMN 1202 A 1 
HETATM 19 C C1' FMN . . . D 3 -81.834 -57.422 11.033 1 53.53 ? C1' FMN 1202 A 1 
HETATM 20 C C2' FMN . . . D 3 -80.493 -57.418 10.301 1 56.43 ? C2' FMN 1202 A 1 
HETATM 21 O O2' FMN . . . D 3 -79.43 -57.318 11.251 1 57.97 ? O2' FMN 1202 A 1 
HETATM 22 C C3' FMN . . . D 3 -80.437 -56.208 9.366 1 56.85 ? C3' FMN 1202 A 1 
HETATM 23 O O3' FMN . . . D 3 -81.304 -56.436 8.261 1 57.54 ? O3' FMN 1202 A 1 
HETATM 24 C C4' FMN . . . D 3 -79.063 -55.837 8.809 1 57.3 ? C4' FMN 1202 A 1 
HETATM 25 O O4' FMN . . . D 3 -79.115 -54.516 8.268 1 59.44 ? O4' FMN 1202 A 1 
HETATM 26 C C5' FMN . . . D 3 -78.466 -56.843 7.844 1 56.19 ? C5' FMN 1202 A 1 
HETATM 27 O O5' FMN . . . D 3 -77.172 -56.35 7.43 1 55.84 ? O5' FMN 1202 A 1 
HETATM 28 P P FMN . . . D 3 -76.13 -57.122 6.497 1 55.82 ? P FMN 1202 A 1 
HETATM 29 O O1P FMN . . . D 3 -76.335 -56.743 5.094 1 58.47 ? O1P FMN 1202 A 1 
HETATM 30 O O2P FMN . . . D 3 -74.777 -56.697 6.978 1 54.4 ? O2P FMN 1202 A 1 
HETATM 31 O O3P FMN . . . D 3 -76.273 -58.629 6.744 1 53.69 ? O3P FMN 1202 A 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#