data_5V57 # _model_server_result.job_id s_zWfL7o_CZgzjst0ytrYQ _model_server_result.datetime_utc '2025-02-26 23:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1203}' # _entry.id 5V57 # _exptl.entry_id 5V57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.79 _cell.angle_gamma 90 _cell.entry_id 5V57 _cell.length_a 40.08 _cell.length_b 356.36 _cell.length_c 59.09 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 64 1_555 A SG CYS 121 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 13 A CYS 70 1_555 A SG CYS 77 A CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 A SG CYS 21 A CYS 78 1_555 A SG CYS 70 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 61 A CYS 118 1_555 A SG CYS 97 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 90 A CYS 147 1_555 A SG CYS 112 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 136 A CYS 193 1_555 A SG CYS 156 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 A SG CYS 160 A CYS 217 1_555 A SG CYS 238 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 A SG CYS 257 A CYS 314 1_555 A SG CYS 333 A CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 A SG CYS 570 A CYS 490 1_555 A SG CYS 587 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf10 B SG CYS 7 B CYS 64 1_555 B SG CYS 121 B CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf11 B SG CYS 13 B CYS 70 1_555 B SG CYS 77 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 B SG CYS 21 B CYS 78 1_555 B SG CYS 70 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 B SG CYS 61 B CYS 118 1_555 B SG CYS 97 B CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf14 B SG CYS 90 B CYS 147 1_555 B SG CYS 112 B CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf15 B SG CYS 136 B CYS 193 1_555 B SG CYS 156 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf16 B SG CYS 160 B CYS 217 1_555 B SG CYS 238 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf17 B SG CYS 257 B CYS 314 1_555 B SG CYS 333 B CYS 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf18 B SG CYS 570 B CYS 490 1_555 B SG CYS 587 B CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 356 n n C10 C9 OLC doub 357 n n C10 C11 OLC sing 358 n n C9 C8 OLC sing 359 n n C17 C16 OLC sing 360 z n C11 C12 OLC sing 361 n n C8 C7 OLC sing 362 n n C24 C22 OLC sing 363 n n C24 O25 OLC sing 364 n n C16 C15 OLC sing 365 n n C12 C13 OLC sing 366 n n C7 C6 OLC sing 367 n n C15 C14 OLC sing 368 n n C13 C14 OLC sing 369 n n C6 C5 OLC sing 370 n n C5 C4 OLC sing 371 n n C4 C3 OLC sing 372 n n C3 C2 OLC sing 373 n n C2 C1 OLC sing 374 n n C21 C22 OLC sing 375 n n C21 O20 OLC sing 376 n n C1 O19 OLC doub 377 n n C1 O20 OLC sing 378 n n C22 O23 OLC sing 379 n n C18 H18 OLC sing 380 n n C18 H18A OLC sing 381 n n C18 H18B OLC sing 382 n n C10 H10 OLC sing 383 n n C9 H9 OLC sing 384 n n C17 H17 OLC sing 385 n n C17 H17A OLC sing 386 n n C11 H11 OLC sing 387 n n C11 H11A OLC sing 388 n n C8 H8 OLC sing 389 n n C8 H8A OLC sing 390 n n C24 H24 OLC sing 391 n n C24 H24A OLC sing 392 n n C16 H16 OLC sing 393 n n C16 H16A OLC sing 394 n n C12 H12 OLC sing 395 n n C12 H12A OLC sing 396 n n C7 H7 OLC sing 397 n n C7 H7A OLC sing 398 n n C15 H15 OLC sing 399 n n C15 H15A OLC sing 400 n n C13 H13 OLC sing 401 n n C13 H13A OLC sing 402 n n C6 H6 OLC sing 403 n n C6 H6A OLC sing 404 n n C14 H14 OLC sing 405 n n C14 H14A OLC sing 406 n n C5 H5 OLC sing 407 n n C5 H5A OLC sing 408 n n C4 H4 OLC sing 409 n n C4 H4A OLC sing 410 n n C3 H3 OLC sing 411 n n C3 H3A OLC sing 412 n n C2 H2 OLC sing 413 n n C2 H2A OLC sing 414 n n C21 H21 OLC sing 415 n n C21 H21A OLC sing 416 n n C22 H22 OLC sing 417 n n O25 HO25 OLC sing 418 n n O23 HO23 OLC sing 419 n n # _atom_sites.entry_id 5V57 _atom_sites.fract_transf_matrix[1][1] 0.02495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005664 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002806 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 836 A 1 1201 1799 836 LIG . D 3 FMN A 1 1202 1800 FMN FMN . E 2 836 B 1 1201 1799 836 LIG . F 3 FMN B 1 1202 1800 FMN FMN . G 4 OLC B 1 1203 1801 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 OLC . . . G 4 -89.3 -71.618 44.869 1 84.73 ? C24 OLC 1203 B 1 HETATM 2 C C5 OLC . . . G 4 -87.585 -80.555 43.2 1 71.94 ? C5 OLC 1203 B 1 HETATM 3 C C4 OLC . . . G 4 -87.821 -79.243 42.461 1 72.78 ? C4 OLC 1203 B 1 HETATM 4 C C3 OLC . . . G 4 -88.586 -78.245 43.322 1 73.94 ? C3 OLC 1203 B 1 HETATM 5 C C2 OLC . . . G 4 -88.841 -76.96 42.537 1 76.55 ? C2 OLC 1203 B 1 HETATM 6 C C21 OLC . . . G 4 -88.205 -73.769 44.359 1 82.86 ? C21 OLC 1203 B 1 HETATM 7 C C1 OLC . . . G 4 -89.325 -75.82 43.419 1 79.42 ? C1 OLC 1203 B 1 HETATM 8 C C22 OLC . . . G 4 -88.181 -72.275 44.073 1 84.16 ? C22 OLC 1203 B 1 HETATM 9 O O19 OLC . . . G 4 -90.21 -75.984 44.25 1 79.83 ? O19 OLC 1203 B 1 HETATM 10 O O25 OLC . . . G 4 -89.227 -70.195 44.724 1 85.4 ? O25 OLC 1203 B 1 HETATM 11 O O23 OLC . . . G 4 -86.913 -71.744 44.496 1 84.83 ? O23 OLC 1203 B 1 HETATM 12 O O20 OLC . . . G 4 -88.757 -74.484 43.254 1 81.21 ? O20 OLC 1203 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #