data_5V58 # _model_server_result.job_id FFIUjrr2VTtIUDjfmQX5vQ _model_server_result.datetime_utc '2024-11-04 20:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v58 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1601}' # _entry.id 5V58 # _exptl.entry_id 5V58 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.408 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-{[(2S)-azetidine-2-carbonyl]sulfamoyl}adenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5V58 _cell.length_a 86.766 _cell.length_b 86.766 _cell.length_c 108.773 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V58 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -36.257667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 460 A CYS 1453 1_555 A SG CYS 504 A CYS 1497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A SG CYS 455 A CYS 1448 1_555 C ZN ZN . A ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc2 A SG CYS 502 A CYS 1495 1_555 C ZN ZN . A ZN 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? # _chem_comp.formula 'C14 H19 N7 O7 S' _chem_comp.formula_weight 429.408 _chem_comp.id 8X1 _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-{[(2S)-azetidine-2-carbonyl]sulfamoyl}adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CG N 8X1 sing 1 n n CG CB 8X1 sing 2 n n N CA 8X1 sing 3 n n CB CA 8X1 sing 4 n n O C 8X1 doub 5 n n CA C 8X1 sing 6 n n C N3S 8X1 sing 7 n n N1 C2 8X1 doub 8 n y N1 C6 8X1 sing 9 n y C2 N3 8X1 sing 10 n y N6 C6 8X1 sing 11 n n C6 C5 8X1 doub 12 n y N3 C4 8X1 doub 13 n y O4' C4' 8X1 sing 14 n n O4' C1' 8X1 sing 15 n n C5 C4 8X1 sing 16 n y C5 N7 8X1 sing 17 n y N3S S 8X1 sing 18 n n C4 N9 8X1 sing 19 n y C5' O5' 8X1 sing 20 n n C5' C4' 8X1 sing 21 n n O5' S 8X1 sing 22 n n N7 C8 8X1 doub 23 n y N9 C1' 8X1 sing 24 n n N9 C8 8X1 sing 25 n y C4' C3' 8X1 sing 26 n n C1' C2' 8X1 sing 27 n n O1S S 8X1 doub 28 n n S O2S 8X1 doub 29 n n C3' C2' 8X1 sing 30 n n C3' O3' 8X1 sing 31 n n C2' O2' 8X1 sing 32 n n N3S H1 8X1 sing 33 n n CA H2 8X1 sing 34 n n CB H3 8X1 sing 35 n n CB H4 8X1 sing 36 n n CG H5 8X1 sing 37 n n CG H6 8X1 sing 38 n n N H7 8X1 sing 39 n n C5' H9 8X1 sing 40 n n C5' H10 8X1 sing 41 n n C4' H11 8X1 sing 42 n n C3' H12 8X1 sing 43 n n O3' H13 8X1 sing 44 n n C2' H14 8X1 sing 45 n n O2' H15 8X1 sing 46 n n C1' H16 8X1 sing 47 n n C8 H17 8X1 sing 48 n n C2 H18 8X1 sing 49 n n N6 H19 8X1 sing 50 n n N6 H20 8X1 sing 51 n n # _atom_sites.entry_id 5V58 _atom_sites.fract_transf_matrix[1][1] 0.011525 _atom_sites.fract_transf_matrix[1][2] 0.006654 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8X1 A 1 1601 1 8X1 AZE . C 3 ZN A 1 1602 1 ZN ZN . D 4 HOH A 1 1701 15 HOH HOH . D 4 HOH A 2 1702 16 HOH HOH . D 4 HOH A 3 1703 7 HOH HOH . D 4 HOH A 4 1704 8 HOH HOH . D 4 HOH A 5 1705 12 HOH HOH . D 4 HOH A 6 1706 30 HOH HOH . D 4 HOH A 7 1707 29 HOH HOH . D 4 HOH A 8 1708 33 HOH HOH . D 4 HOH A 9 1709 31 HOH HOH . D 4 HOH A 10 1710 18 HOH HOH . D 4 HOH A 11 1711 35 HOH HOH . D 4 HOH A 12 1712 13 HOH HOH . D 4 HOH A 13 1713 20 HOH HOH . D 4 HOH A 14 1714 5 HOH HOH . D 4 HOH A 15 1715 32 HOH HOH . D 4 HOH A 16 1716 23 HOH HOH . D 4 HOH A 17 1717 9 HOH HOH . D 4 HOH A 18 1718 10 HOH HOH . D 4 HOH A 19 1719 28 HOH HOH . D 4 HOH A 20 1720 14 HOH HOH . D 4 HOH A 21 1721 19 HOH HOH . D 4 HOH A 22 1722 1 HOH HOH . D 4 HOH A 23 1723 34 HOH HOH . D 4 HOH A 24 1724 11 HOH HOH . D 4 HOH A 25 1725 24 HOH HOH . D 4 HOH A 26 1726 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2S 8X1 . . . B 2 6.224 -23.646 -0.851 1 44.57 ? O2S 8X1 1601 A 1 HETATM 2 S S 8X1 . . . B 2 6.04 -23.199 -2.203 1 45.78 ? S 8X1 1601 A 1 HETATM 3 O O1S 8X1 . . . B 2 5.364 -21.932 -2.209 1 44.18 ? O1S 8X1 1601 A 1 HETATM 4 N N3S 8X1 . . . B 2 5.239 -24.259 -2.947 1 46 ? N3S 8X1 1601 A 1 HETATM 5 C C 8X1 . . . B 2 4.714 -24.075 -4.156 1 47.61 ? C 8X1 1601 A 1 HETATM 6 C CA 8X1 . . . B 2 3.966 -25.244 -4.722 1 48.24 ? CA 8X1 1601 A 1 HETATM 7 C CB 8X1 . . . B 2 4.8 -26.143 -5.641 1 48.6 ? CB 8X1 1601 A 1 HETATM 8 C CG 8X1 . . . B 2 3.89 -25.816 -6.829 1 48.78 ? CG 8X1 1601 A 1 HETATM 9 N N 8X1 . . . B 2 3.169 -24.995 -5.893 1 49.41 ? N 8X1 1601 A 1 HETATM 10 O O 8X1 . . . B 2 4.815 -23.037 -4.792 1 47.87 ? O 8X1 1601 A 1 HETATM 11 O O5' 8X1 . . . B 2 7.408 -23.043 -2.879 1 45.59 ? O5' 8X1 1601 A 1 HETATM 12 C C5' 8X1 . . . B 2 8.308 -24.145 -2.914 1 45.92 ? C5' 8X1 1601 A 1 HETATM 13 C C4' 8X1 . . . B 2 9.655 -23.737 -2.335 1 46.98 ? C4' 8X1 1601 A 1 HETATM 14 C C3' 8X1 . . . B 2 9.621 -23.287 -0.88 1 47.18 ? C3' 8X1 1601 A 1 HETATM 15 O O3' 8X1 . . . B 2 9.771 -24.379 0.033 1 48.31 ? O3' 8X1 1601 A 1 HETATM 16 C C2' 8X1 . . . B 2 10.774 -22.308 -0.779 1 47.67 ? C2' 8X1 1601 A 1 HETATM 17 O O2' 8X1 . . . B 2 11.916 -22.927 -0.179 1 48.28 ? O2' 8X1 1601 A 1 HETATM 18 C C1' 8X1 . . . B 2 11.089 -21.908 -2.216 1 47.96 ? C1' 8X1 1601 A 1 HETATM 19 O O4' 8X1 . . . B 2 10.179 -22.623 -3.054 1 47.87 ? O4' 8X1 1601 A 1 HETATM 20 N N9 8X1 . . . B 2 10.932 -20.447 -2.425 1 48.38 ? N9 8X1 1601 A 1 HETATM 21 C C4 8X1 . . . B 2 11.865 -19.646 -2.944 1 49.12 ? C4 8X1 1601 A 1 HETATM 22 C C5 8X1 . . . B 2 11.339 -18.364 -2.978 1 49.18 ? C5 8X1 1601 A 1 HETATM 23 N N7 8X1 . . . B 2 10.09 -18.425 -2.475 1 48.72 ? N7 8X1 1601 A 1 HETATM 24 C C8 8X1 . . . B 2 9.846 -19.711 -2.141 1 48.2 ? C8 8X1 1601 A 1 HETATM 25 N N3 8X1 . . . B 2 13.126 -19.871 -3.398 1 48.45 ? N3 8X1 1601 A 1 HETATM 26 C C2 8X1 . . . B 2 13.864 -18.857 -3.874 1 49.26 ? C2 8X1 1601 A 1 HETATM 27 N N1 8X1 . . . B 2 13.375 -17.605 -3.915 1 50.25 ? N1 8X1 1601 A 1 HETATM 28 C C6 8X1 . . . B 2 12.123 -17.331 -3.478 1 49.75 ? C6 8X1 1601 A 1 HETATM 29 N N6 8X1 . . . B 2 11.644 -16.064 -3.526 1 50.45 ? N6 8X1 1601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #