data_5V5D # _model_server_result.job_id 0mu5eyowEgLcIoiWw_lGXw _model_server_result.datetime_utc '2024-12-26 22:16:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 5V5D # _exptl.entry_id 5V5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 429.511 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-(phenylamino)benzoic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V5D _cell.length_a 69.06 _cell.length_b 94.09 _cell.length_c 119.68 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # _chem_comp.formula 'C26 H27 N3 O3' _chem_comp.formula_weight 429.511 _chem_comp.id 8OY _chem_comp.mon_nstd_flag . _chem_comp.name '4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-(phenylamino)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 8OY sing 1 n n C11 C12 8OY sing 2 n n C10 C09 8OY sing 3 n n C12 C07 8OY sing 4 n n C09 C08 8OY sing 5 n n C07 C08 8OY sing 6 n n C07 C06 8OY sing 7 n n C29 C30 8OY doub 8 n y C29 C28 8OY sing 9 n y C30 C31 8OY sing 10 n y C14 C15 8OY doub 11 n y C14 C13 8OY sing 12 n y C15 C03 8OY sing 13 n y O01 C02 8OY doub 14 n n C13 C05 8OY doub 15 n y C28 C27 8OY doub 16 n y C03 C02 8OY sing 17 n n C03 N04 8OY doub 18 n y C02 N16 8OY sing 19 n n C05 N04 8OY sing 20 n y C05 C06 8OY sing 21 n n C18 C19 8OY doub 22 n y C18 C17 8OY sing 23 n y N16 C17 8OY sing 24 n n C19 C20 8OY sing 25 n y C17 C25 8OY doub 26 n y C31 C32 8OY doub 27 n y C27 C32 8OY sing 28 n y C27 N26 8OY sing 29 n n C20 C21 8OY sing 30 n n C20 C24 8OY doub 31 n y O22 C21 8OY doub 32 n n C25 C24 8OY sing 33 n y C25 N26 8OY sing 34 n n C21 O23 8OY sing 35 n n C06 H061 8OY sing 36 n n C06 H062 8OY sing 37 n n C07 H071 8OY sing 38 n n C08 H082 8OY sing 39 n n C08 H081 8OY sing 40 n n C09 H091 8OY sing 41 n n C09 H092 8OY sing 42 n n C10 H101 8OY sing 43 n n C10 H102 8OY sing 44 n n C11 H112 8OY sing 45 n n C11 H111 8OY sing 46 n n C12 H122 8OY sing 47 n n C12 H121 8OY sing 48 n n C13 H131 8OY sing 49 n n C14 H141 8OY sing 50 n n C15 H151 8OY sing 51 n n N16 H161 8OY sing 52 n n C18 H181 8OY sing 53 n n C19 H191 8OY sing 54 n n O23 H1 8OY sing 55 n n C24 H241 8OY sing 56 n n N26 H261 8OY sing 57 n n C28 H281 8OY sing 58 n n C29 H291 8OY sing 59 n n C30 H301 8OY sing 60 n n C31 H311 8OY sing 61 n n C32 H321 8OY sing 62 n n # _atom_sites.entry_id 5V5D _atom_sites.fract_transf_matrix[1][1] 0.01448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8OY A 1 201 2 8OY LIG . D 2 8OY B 1 201 1 8OY LIG . E 2 8OY B 1 202 3 8OY LIG . F 3 HOH A 1 301 53 HOH HOH . F 3 HOH A 2 302 56 HOH HOH . F 3 HOH A 3 303 73 HOH HOH . F 3 HOH A 4 304 30 HOH HOH . F 3 HOH A 5 305 80 HOH HOH . F 3 HOH A 6 306 6 HOH HOH . F 3 HOH A 7 307 15 HOH HOH . F 3 HOH A 8 308 47 HOH HOH . F 3 HOH A 9 309 67 HOH HOH . F 3 HOH A 10 310 61 HOH HOH . F 3 HOH A 11 311 36 HOH HOH . F 3 HOH A 12 312 88 HOH HOH . F 3 HOH A 13 313 70 HOH HOH . F 3 HOH A 14 314 82 HOH HOH . F 3 HOH A 15 315 21 HOH HOH . F 3 HOH A 16 316 31 HOH HOH . F 3 HOH A 17 317 14 HOH HOH . F 3 HOH A 18 318 9 HOH HOH . F 3 HOH A 19 319 51 HOH HOH . F 3 HOH A 20 320 68 HOH HOH . F 3 HOH A 21 321 28 HOH HOH . F 3 HOH A 22 322 43 HOH HOH . F 3 HOH A 23 323 1 HOH HOH . F 3 HOH A 24 324 5 HOH HOH . F 3 HOH A 25 325 66 HOH HOH . F 3 HOH A 26 326 85 HOH HOH . F 3 HOH A 27 327 104 HOH HOH . F 3 HOH A 28 328 54 HOH HOH . F 3 HOH A 29 329 45 HOH HOH . F 3 HOH A 30 330 38 HOH HOH . F 3 HOH A 31 331 27 HOH HOH . F 3 HOH A 32 332 13 HOH HOH . F 3 HOH A 33 333 100 HOH HOH . F 3 HOH A 34 334 90 HOH HOH . F 3 HOH A 35 335 48 HOH HOH . F 3 HOH A 36 336 86 HOH HOH . F 3 HOH A 37 337 101 HOH HOH . F 3 HOH A 38 338 71 HOH HOH . F 3 HOH A 39 339 60 HOH HOH . F 3 HOH A 40 340 17 HOH HOH . F 3 HOH A 41 341 26 HOH HOH . F 3 HOH A 42 342 77 HOH HOH . F 3 HOH A 43 343 76 HOH HOH . F 3 HOH A 44 344 58 HOH HOH . F 3 HOH A 45 345 91 HOH HOH . F 3 HOH A 46 346 89 HOH HOH . F 3 HOH A 47 347 64 HOH HOH . F 3 HOH A 48 348 46 HOH HOH . F 3 HOH A 49 349 106 HOH HOH . F 3 HOH A 50 350 78 HOH HOH . G 3 HOH B 1 301 59 HOH HOH . G 3 HOH B 2 302 98 HOH HOH . G 3 HOH B 3 303 55 HOH HOH . G 3 HOH B 4 304 87 HOH HOH . G 3 HOH B 5 305 25 HOH HOH . G 3 HOH B 6 306 49 HOH HOH . G 3 HOH B 7 307 99 HOH HOH . G 3 HOH B 8 308 72 HOH HOH . G 3 HOH B 9 309 32 HOH HOH . G 3 HOH B 10 310 7 HOH HOH . G 3 HOH B 11 311 20 HOH HOH . G 3 HOH B 12 312 52 HOH HOH . G 3 HOH B 13 313 97 HOH HOH . G 3 HOH B 14 314 16 HOH HOH . G 3 HOH B 15 315 74 HOH HOH . G 3 HOH B 16 316 108 HOH HOH . G 3 HOH B 17 317 4 HOH HOH . G 3 HOH B 18 318 35 HOH HOH . G 3 HOH B 19 319 2 HOH HOH . G 3 HOH B 20 320 109 HOH HOH . G 3 HOH B 21 321 69 HOH HOH . G 3 HOH B 22 322 94 HOH HOH . G 3 HOH B 23 323 19 HOH HOH . G 3 HOH B 24 324 44 HOH HOH . G 3 HOH B 25 325 34 HOH HOH . G 3 HOH B 26 326 37 HOH HOH . G 3 HOH B 27 327 11 HOH HOH . G 3 HOH B 28 328 18 HOH HOH . G 3 HOH B 29 329 95 HOH HOH . G 3 HOH B 30 330 105 HOH HOH . G 3 HOH B 31 331 3 HOH HOH . G 3 HOH B 32 332 79 HOH HOH . G 3 HOH B 33 333 63 HOH HOH . G 3 HOH B 34 334 29 HOH HOH . G 3 HOH B 35 335 23 HOH HOH . G 3 HOH B 36 336 65 HOH HOH . G 3 HOH B 37 337 57 HOH HOH . G 3 HOH B 38 338 39 HOH HOH . G 3 HOH B 39 339 22 HOH HOH . G 3 HOH B 40 340 84 HOH HOH . G 3 HOH B 41 341 10 HOH HOH . G 3 HOH B 42 342 8 HOH HOH . G 3 HOH B 43 343 102 HOH HOH . G 3 HOH B 44 344 42 HOH HOH . G 3 HOH B 45 345 41 HOH HOH . G 3 HOH B 46 346 24 HOH HOH . G 3 HOH B 47 347 75 HOH HOH . G 3 HOH B 48 348 50 HOH HOH . G 3 HOH B 49 349 93 HOH HOH . G 3 HOH B 50 350 62 HOH HOH . G 3 HOH B 51 351 103 HOH HOH . G 3 HOH B 52 352 33 HOH HOH . G 3 HOH B 53 353 40 HOH HOH . G 3 HOH B 54 354 107 HOH HOH . G 3 HOH B 55 355 12 HOH HOH . G 3 HOH B 56 356 92 HOH HOH . G 3 HOH B 57 357 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 8OY . . . C 2 -1.899 -29.981 -41.996 1 23.15 ? O01 8OY 201 A 1 HETATM 2 C C02 8OY . . . C 2 -3.071 -29.977 -41.778 1 21.28 ? C02 8OY 201 A 1 HETATM 3 C C03 8OY . . . C 2 -3.959 -31.269 -41.978 1 20.03 ? C03 8OY 201 A 1 HETATM 4 N N04 8OY . . . C 2 -5.32 -31.062 -41.868 1 20.02 ? N04 8OY 201 A 1 HETATM 5 C C05 8OY . . . C 2 -6.193 -32.115 -41.997 1 21.06 ? C05 8OY 201 A 1 HETATM 6 C C06 8OY . . . C 2 -7.735 -31.95 -41.908 1 24.29 ? C06 8OY 201 A 1 HETATM 7 C C07 8OY . . . C 2 -8.562 -31.74 -43.224 1 27.6 ? C07 8OY 201 A 1 HETATM 8 C C08 8OY . . . C 2 -7.705 -31.362 -44.451 1 28.36 ? C08 8OY 201 A 1 HETATM 9 C C09 8OY . . . C 2 -8.477 -31.038 -45.737 1 29.52 ? C09 8OY 201 A 1 HETATM 10 C C10 8OY . . . C 2 -9.987 -30.953 -45.574 1 30.08 ? C10 8OY 201 A 1 HETATM 11 C C11 8OY . . . C 2 -10.438 -30.283 -44.301 1 29.97 ? C11 8OY 201 A 1 HETATM 12 C C12 8OY . . . C 2 -9.665 -30.683 -43.044 1 29.54 ? C12 8OY 201 A 1 HETATM 13 C C13 8OY . . . C 2 -5.674 -33.399 -42.231 1 20.2 ? C13 8OY 201 A 1 HETATM 14 C C14 8OY . . . C 2 -4.321 -33.604 -42.324 1 19.81 ? C14 8OY 201 A 1 HETATM 15 C C15 8OY . . . C 2 -3.416 -32.529 -42.191 1 19.79 ? C15 8OY 201 A 1 HETATM 16 N N16 8OY . . . C 2 -3.705 -28.784 -41.305 1 21.95 ? N16 8OY 201 A 1 HETATM 17 C C17 8OY . . . C 2 -3.096 -27.507 -40.997 1 24.65 ? C17 8OY 201 A 1 HETATM 18 C C18 8OY . . . C 2 -1.828 -27.075 -41.424 1 25.79 ? C18 8OY 201 A 1 HETATM 19 C C19 8OY . . . C 2 -1.263 -25.845 -41.089 1 28.32 ? C19 8OY 201 A 1 HETATM 20 C C20 8OY . . . C 2 -1.934 -24.926 -40.267 1 30.44 ? C20 8OY 201 A 1 HETATM 21 C C21 8OY . . . C 2 -1.348 -23.516 -39.844 1 33.96 ? C21 8OY 201 A 1 HETATM 22 O O22 8OY . . . C 2 -2.174 -22.846 -39.173 1 35.06 ? O22 8OY 201 A 1 HETATM 23 O O23 8OY . . . C 2 -0.229 -23.231 -40.174 1 35.78 ? O23 8OY 201 A 1 HETATM 24 C C24 8OY . . . C 2 -3.192 -25.341 -39.823 1 28.75 ? C24 8OY 201 A 1 HETATM 25 C C25 8OY . . . C 2 -3.788 -26.572 -40.141 1 27.07 ? C25 8OY 201 A 1 HETATM 26 N N26 8OY . . . C 2 -5.087 -26.92 -39.645 1 27.8 ? N26 8OY 201 A 1 HETATM 27 C C27 8OY . . . C 2 -6.252 -27.084 -40.399 1 29.05 ? C27 8OY 201 A 1 HETATM 28 C C28 8OY . . . C 2 -6.311 -26.918 -41.795 1 30.16 ? C28 8OY 201 A 1 HETATM 29 C C29 8OY . . . C 2 -7.459 -27.07 -42.585 1 31.35 ? C29 8OY 201 A 1 HETATM 30 C C30 8OY . . . C 2 -8.708 -27.413 -42.03 1 31.73 ? C30 8OY 201 A 1 HETATM 31 C C31 8OY . . . C 2 -8.483 -27.538 -40.705 1 31.05 ? C31 8OY 201 A 1 HETATM 32 C C32 8OY . . . C 2 -7.547 -27.449 -39.786 1 30.05 ? C32 8OY 201 A 1 HETATM 33 H H061 8OY . . . C 2 -8.135 -32.681 -41.411 1 29.14 ? H061 8OY 201 A 1 HETATM 34 H H062 8OY . . . C 2 -7.942 -31.189 -41.343 1 29.14 ? H062 8OY 201 A 1 HETATM 35 H H071 8OY . . . C 2 -8.978 -32.595 -43.417 1 33.12 ? H071 8OY 201 A 1 HETATM 36 H H082 8OY . . . C 2 -7.063 -32.065 -44.637 1 34.03 ? H082 8OY 201 A 1 HETATM 37 H H081 8OY . . . C 2 -7.11 -30.626 -44.239 1 34.03 ? H081 8OY 201 A 1 HETATM 38 H H091 8OY . . . C 2 -8.253 -31.666 -46.442 1 35.42 ? H091 8OY 201 A 1 HETATM 39 H H092 8OY . . . C 2 -8.146 -30.21 -46.117 1 35.42 ? H092 8OY 201 A 1 HETATM 40 H H101 8OY . . . C 2 -10.374 -30.5 -46.339 1 36.1 ? H101 8OY 201 A 1 HETATM 41 H H102 8OY . . . C 2 -10.375 -31.839 -45.639 1 36.1 ? H102 8OY 201 A 1 HETATM 42 H H112 8OY . . . C 2 -10.391 -29.322 -44.421 1 35.96 ? H112 8OY 201 A 1 HETATM 43 H H111 8OY . . . C 2 -11.392 -30.417 -44.182 1 35.96 ? H111 8OY 201 A 1 HETATM 44 H H122 8OY . . . C 2 -9.295 -29.878 -42.65 1 35.45 ? H122 8OY 201 A 1 HETATM 45 H H121 8OY . . . C 2 -10.276 -30.968 -42.346 1 35.45 ? H121 8OY 201 A 1 HETATM 46 H H131 8OY . . . C 2 -6.265 -34.111 -42.324 1 24.24 ? H131 8OY 201 A 1 HETATM 47 H H141 8OY . . . C 2 -3.93 -34.434 -42.479 1 23.77 ? H141 8OY 201 A 1 HETATM 48 H H151 8OY . . . C 2 -2.508 -32.714 -42.261 1 23.75 ? H151 8OY 201 A 1 HETATM 49 H H161 8OY . . . C 2 -4.547 -28.809 -41.131 1 26.34 ? H161 8OY 201 A 1 HETATM 50 H H181 8OY . . . C 2 -1.3 -27.609 -41.972 1 30.95 ? H181 8OY 201 A 1 HETATM 51 H H191 8OY . . . C 2 -0.421 -25.609 -41.406 1 33.98 ? H191 8OY 201 A 1 HETATM 52 H H241 8OY . . . C 2 -3.621 -24.72 -39.28 1 34.51 ? H241 8OY 201 A 1 HETATM 53 H H261 8OY . . . C 2 -5.215 -26.844 -38.799 1 33.36 ? H261 8OY 201 A 1 HETATM 54 H H281 8OY . . . C 2 -5.526 -26.687 -42.236 1 36.19 ? H281 8OY 201 A 1 HETATM 55 H H291 8OY . . . C 2 -7.441 -26.947 -43.507 1 37.62 ? H291 8OY 201 A 1 HETATM 56 H H301 8OY . . . C 2 -9.483 -27.523 -42.533 1 38.07 ? H301 8OY 201 A 1 HETATM 57 H H321 8OY . . . C 2 -7.623 -27.583 -38.869 1 36.06 ? H321 8OY 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 57 #