data_5V5D
#
_model_server_result.job_id            89liQm2Z64q8z6l5N8F37g 
_model_server_result.datetime_utc      '2024-12-26 22:06:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v5d 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    5V5D 
#
_exptl.entry_id    5V5D 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              429.511 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-(phenylamino)benzoic acid' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V5D 
_cell.length_a            69.06 
_cell.length_b            94.09 
_cell.length_c            119.68 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V5D 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'C26 H27 N3 O3' 
_chem_comp.formula_weight    429.511 
_chem_comp.id                8OY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-{[6-(cyclohexylmethyl)pyridine-2-carbonyl]amino}-3-(phenylamino)benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 8OY sing 1 n n 
C11 C12 8OY sing 2 n n 
C10 C09 8OY sing 3 n n 
C12 C07 8OY sing 4 n n 
C09 C08 8OY sing 5 n n 
C07 C08 8OY sing 6 n n 
C07 C06 8OY sing 7 n n 
C29 C30 8OY doub 8 n y 
C29 C28 8OY sing 9 n y 
C30 C31 8OY sing 10 n y 
C14 C15 8OY doub 11 n y 
C14 C13 8OY sing 12 n y 
C15 C03 8OY sing 13 n y 
O01 C02 8OY doub 14 n n 
C13 C05 8OY doub 15 n y 
C28 C27 8OY doub 16 n y 
C03 C02 8OY sing 17 n n 
C03 N04 8OY doub 18 n y 
C02 N16 8OY sing 19 n n 
C05 N04 8OY sing 20 n y 
C05 C06 8OY sing 21 n n 
C18 C19 8OY doub 22 n y 
C18 C17 8OY sing 23 n y 
N16 C17 8OY sing 24 n n 
C19 C20 8OY sing 25 n y 
C17 C25 8OY doub 26 n y 
C31 C32 8OY doub 27 n y 
C27 C32 8OY sing 28 n y 
C27 N26 8OY sing 29 n n 
C20 C21 8OY sing 30 n n 
C20 C24 8OY doub 31 n y 
O22 C21 8OY doub 32 n n 
C25 C24 8OY sing 33 n y 
C25 N26 8OY sing 34 n n 
C21 O23 8OY sing 35 n n 
C06 H061 8OY sing 36 n n 
C06 H062 8OY sing 37 n n 
C07 H071 8OY sing 38 n n 
C08 H082 8OY sing 39 n n 
C08 H081 8OY sing 40 n n 
C09 H091 8OY sing 41 n n 
C09 H092 8OY sing 42 n n 
C10 H101 8OY sing 43 n n 
C10 H102 8OY sing 44 n n 
C11 H112 8OY sing 45 n n 
C11 H111 8OY sing 46 n n 
C12 H122 8OY sing 47 n n 
C12 H121 8OY sing 48 n n 
C13 H131 8OY sing 49 n n 
C14 H141 8OY sing 50 n n 
C15 H151 8OY sing 51 n n 
N16 H161 8OY sing 52 n n 
C18 H181 8OY sing 53 n n 
C19 H191 8OY sing 54 n n 
O23 H1 8OY sing 55 n n 
C24 H241 8OY sing 56 n n 
N26 H261 8OY sing 57 n n 
C28 H281 8OY sing 58 n n 
C29 H291 8OY sing 59 n n 
C30 H301 8OY sing 60 n n 
C31 H311 8OY sing 61 n n 
C32 H321 8OY sing 62 n n 
#
_atom_sites.entry_id                     5V5D 
_atom_sites.fract_transf_matrix[1][1]    0.01448 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010628 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008356 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 8OY A 1 201 2 8OY LIG . 
D 2 8OY B 1 201 1 8OY LIG . 
E 2 8OY B 1 202 3 8OY LIG . 
F 3 HOH A 1 301 53 HOH HOH . 
F 3 HOH A 2 302 56 HOH HOH . 
F 3 HOH A 3 303 73 HOH HOH . 
F 3 HOH A 4 304 30 HOH HOH . 
F 3 HOH A 5 305 80 HOH HOH . 
F 3 HOH A 6 306 6 HOH HOH . 
F 3 HOH A 7 307 15 HOH HOH . 
F 3 HOH A 8 308 47 HOH HOH . 
F 3 HOH A 9 309 67 HOH HOH . 
F 3 HOH A 10 310 61 HOH HOH . 
F 3 HOH A 11 311 36 HOH HOH . 
F 3 HOH A 12 312 88 HOH HOH . 
F 3 HOH A 13 313 70 HOH HOH . 
F 3 HOH A 14 314 82 HOH HOH . 
F 3 HOH A 15 315 21 HOH HOH . 
F 3 HOH A 16 316 31 HOH HOH . 
F 3 HOH A 17 317 14 HOH HOH . 
F 3 HOH A 18 318 9 HOH HOH . 
F 3 HOH A 19 319 51 HOH HOH . 
F 3 HOH A 20 320 68 HOH HOH . 
F 3 HOH A 21 321 28 HOH HOH . 
F 3 HOH A 22 322 43 HOH HOH . 
F 3 HOH A 23 323 1 HOH HOH . 
F 3 HOH A 24 324 5 HOH HOH . 
F 3 HOH A 25 325 66 HOH HOH . 
F 3 HOH A 26 326 85 HOH HOH . 
F 3 HOH A 27 327 104 HOH HOH . 
F 3 HOH A 28 328 54 HOH HOH . 
F 3 HOH A 29 329 45 HOH HOH . 
F 3 HOH A 30 330 38 HOH HOH . 
F 3 HOH A 31 331 27 HOH HOH . 
F 3 HOH A 32 332 13 HOH HOH . 
F 3 HOH A 33 333 100 HOH HOH . 
F 3 HOH A 34 334 90 HOH HOH . 
F 3 HOH A 35 335 48 HOH HOH . 
F 3 HOH A 36 336 86 HOH HOH . 
F 3 HOH A 37 337 101 HOH HOH . 
F 3 HOH A 38 338 71 HOH HOH . 
F 3 HOH A 39 339 60 HOH HOH . 
F 3 HOH A 40 340 17 HOH HOH . 
F 3 HOH A 41 341 26 HOH HOH . 
F 3 HOH A 42 342 77 HOH HOH . 
F 3 HOH A 43 343 76 HOH HOH . 
F 3 HOH A 44 344 58 HOH HOH . 
F 3 HOH A 45 345 91 HOH HOH . 
F 3 HOH A 46 346 89 HOH HOH . 
F 3 HOH A 47 347 64 HOH HOH . 
F 3 HOH A 48 348 46 HOH HOH . 
F 3 HOH A 49 349 106 HOH HOH . 
F 3 HOH A 50 350 78 HOH HOH . 
G 3 HOH B 1 301 59 HOH HOH . 
G 3 HOH B 2 302 98 HOH HOH . 
G 3 HOH B 3 303 55 HOH HOH . 
G 3 HOH B 4 304 87 HOH HOH . 
G 3 HOH B 5 305 25 HOH HOH . 
G 3 HOH B 6 306 49 HOH HOH . 
G 3 HOH B 7 307 99 HOH HOH . 
G 3 HOH B 8 308 72 HOH HOH . 
G 3 HOH B 9 309 32 HOH HOH . 
G 3 HOH B 10 310 7 HOH HOH . 
G 3 HOH B 11 311 20 HOH HOH . 
G 3 HOH B 12 312 52 HOH HOH . 
G 3 HOH B 13 313 97 HOH HOH . 
G 3 HOH B 14 314 16 HOH HOH . 
G 3 HOH B 15 315 74 HOH HOH . 
G 3 HOH B 16 316 108 HOH HOH . 
G 3 HOH B 17 317 4 HOH HOH . 
G 3 HOH B 18 318 35 HOH HOH . 
G 3 HOH B 19 319 2 HOH HOH . 
G 3 HOH B 20 320 109 HOH HOH . 
G 3 HOH B 21 321 69 HOH HOH . 
G 3 HOH B 22 322 94 HOH HOH . 
G 3 HOH B 23 323 19 HOH HOH . 
G 3 HOH B 24 324 44 HOH HOH . 
G 3 HOH B 25 325 34 HOH HOH . 
G 3 HOH B 26 326 37 HOH HOH . 
G 3 HOH B 27 327 11 HOH HOH . 
G 3 HOH B 28 328 18 HOH HOH . 
G 3 HOH B 29 329 95 HOH HOH . 
G 3 HOH B 30 330 105 HOH HOH . 
G 3 HOH B 31 331 3 HOH HOH . 
G 3 HOH B 32 332 79 HOH HOH . 
G 3 HOH B 33 333 63 HOH HOH . 
G 3 HOH B 34 334 29 HOH HOH . 
G 3 HOH B 35 335 23 HOH HOH . 
G 3 HOH B 36 336 65 HOH HOH . 
G 3 HOH B 37 337 57 HOH HOH . 
G 3 HOH B 38 338 39 HOH HOH . 
G 3 HOH B 39 339 22 HOH HOH . 
G 3 HOH B 40 340 84 HOH HOH . 
G 3 HOH B 41 341 10 HOH HOH . 
G 3 HOH B 42 342 8 HOH HOH . 
G 3 HOH B 43 343 102 HOH HOH . 
G 3 HOH B 44 344 42 HOH HOH . 
G 3 HOH B 45 345 41 HOH HOH . 
G 3 HOH B 46 346 24 HOH HOH . 
G 3 HOH B 47 347 75 HOH HOH . 
G 3 HOH B 48 348 50 HOH HOH . 
G 3 HOH B 49 349 93 HOH HOH . 
G 3 HOH B 50 350 62 HOH HOH . 
G 3 HOH B 51 351 103 HOH HOH . 
G 3 HOH B 52 352 33 HOH HOH . 
G 3 HOH B 53 353 40 HOH HOH . 
G 3 HOH B 54 354 107 HOH HOH . 
G 3 HOH B 55 355 12 HOH HOH . 
G 3 HOH B 56 356 92 HOH HOH . 
G 3 HOH B 57 357 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 8OY . . . D 2 -35.752 -11.403 -17.747 1 24.47 ? O01 8OY 201 B 1 
HETATM 2 C C02 8OY . . . D 2 -35.188 -12.213 -17.078 1 23.45 ? C02 8OY 201 B 1 
HETATM 3 C C03 8OY . . . D 2 -35.141 -12.151 -15.502 1 22.68 ? C03 8OY 201 B 1 
HETATM 4 N N04 8OY . . . D 2 -34.342 -13.121 -14.966 1 22.06 ? N04 8OY 201 B 1 
HETATM 5 C C05 8OY . . . D 2 -34.168 -13.225 -13.625 1 22.94 ? C05 8OY 201 B 1 
HETATM 6 C C06 8OY . . . D 2 -33.272 -14.319 -13.052 1 24.93 ? C06 8OY 201 B 1 
HETATM 7 C C07 8OY . . . D 2 -31.915 -14.525 -13.785 1 27.5 ? C07 8OY 201 B 1 
HETATM 8 C C08 8OY . . . D 2 -31.243 -15.899 -13.629 1 28.97 ? C08 8OY 201 B 1 
HETATM 9 C C09 8OY . . . D 2 -29.979 -16.051 -14.475 1 29.82 ? C09 8OY 201 B 1 
HETATM 10 C C10 8OY . . . D 2 -28.963 -14.915 -14.313 1 29.75 ? C10 8OY 201 B 1 
HETATM 11 C C11 8OY . . . D 2 -29.553 -13.524 -14.136 1 29.03 ? C11 8OY 201 B 1 
HETATM 12 C C12 8OY . . . D 2 -30.88 -13.467 -13.375 1 28.49 ? C12 8OY 201 B 1 
HETATM 13 C C13 8OY . . . D 2 -34.805 -12.297 -12.779 1 22.57 ? C13 8OY 201 B 1 
HETATM 14 C C14 8OY . . . D 2 -35.602 -11.31 -13.316 1 22.93 ? C14 8OY 201 B 1 
HETATM 15 C C15 8OY . . . D 2 -35.787 -11.21 -14.718 1 23.1 ? C15 8OY 201 B 1 
HETATM 16 N N16 8OY . . . D 2 -34.474 -13.314 -17.656 1 21.93 ? N16 8OY 201 B 1 
HETATM 17 C C17 8OY . . . D 2 -34.229 -13.672 -19.015 1 20.8 ? C17 8OY 201 B 1 
HETATM 18 C C18 8OY . . . D 2 -34.276 -12.803 -20.114 1 20.27 ? C18 8OY 201 B 1 
HETATM 19 C C19 8OY . . . D 2 -33.971 -13.181 -21.417 1 20.45 ? C19 8OY 201 B 1 
HETATM 20 C C20 8OY . . . D 2 -33.553 -14.481 -21.724 1 20.32 ? C20 8OY 201 B 1 
HETATM 21 C C21 8OY . . . D 2 -33.179 -14.971 -23.157 1 21.33 ? C21 8OY 201 B 1 
HETATM 22 O O22 8OY . . . D 2 -33.084 -14.017 -23.97 1 21.27 ? O22 8OY 201 B 1 
HETATM 23 O O23 8OY . . . D 2 -32.991 -16.145 -23.326 1 23.43 ? O23 8OY 201 B 1 
HETATM 24 C C24 8OY . . . D 2 -33.474 -15.345 -20.641 1 19.82 ? C24 8OY 201 B 1 
HETATM 25 C C25 8OY . . . D 2 -33.778 -15 -19.325 1 20.42 ? C25 8OY 201 B 1 
HETATM 26 N N26 8OY . . . D 2 -33.659 -15.957 -18.272 1 20.7 ? N26 8OY 201 B 1 
HETATM 27 C C27 8OY . . . D 2 -32.627 -16.864 -18.092 1 22.6 ? C27 8OY 201 B 1 
HETATM 28 C C28 8OY . . . D 2 -31.266 -16.55 -18.28 1 23.63 ? C28 8OY 201 B 1 
HETATM 29 C C29 8OY . . . D 2 -30.2 -17.441 -18.109 1 24.35 ? C29 8OY 201 B 1 
HETATM 30 C C30 8OY . . . D 2 -30.399 -18.783 -17.722 1 25.16 ? C30 8OY 201 B 1 
HETATM 31 C C31 8OY . . . D 2 -31.736 -18.917 -17.585 1 24.33 ? C31 8OY 201 B 1 
HETATM 32 C C32 8OY . . . D 2 -32.871 -18.262 -17.683 1 23.25 ? C32 8OY 201 B 1 
HETATM 33 H H061 8OY . . . D 2 -33.105 -14.192 -12.105 1 29.92 ? H061 8OY 201 B 1 
HETATM 34 H H062 8OY . . . D 2 -33.732 -15.172 -13.077 1 29.92 ? H062 8OY 201 B 1 
HETATM 35 H H071 8OY . . . D 2 -32.11 -14.412 -14.729 1 33 ? H071 8OY 201 B 1 
HETATM 36 H H082 8OY . . . D 2 -31.028 -16.072 -12.699 1 34.77 ? H082 8OY 201 B 1 
HETATM 37 H H081 8OY . . . D 2 -31.861 -16.621 -13.824 1 34.77 ? H081 8OY 201 B 1 
HETATM 38 H H091 8OY . . . D 2 -30.201 -16.17 -15.411 1 35.79 ? H091 8OY 201 B 1 
HETATM 39 H H092 8OY . . . D 2 -29.552 -16.899 -14.276 1 35.79 ? H092 8OY 201 B 1 
HETATM 40 H H101 8OY . . . D 2 -28.353 -14.916 -15.067 1 35.7 ? H101 8OY 201 B 1 
HETATM 41 H H102 8OY . . . D 2 -28.367 -15.117 -13.574 1 35.7 ? H102 8OY 201 B 1 
HETATM 42 H H112 8OY . . . D 2 -28.899 -12.962 -13.693 1 34.84 ? H112 8OY 201 B 1 
HETATM 43 H H111 8OY . . . D 2 -29.628 -13.09 -15 1 34.84 ? H111 8OY 201 B 1 
HETATM 44 H H122 8OY . . . D 2 -31.251 -12.576 -13.472 1 34.19 ? H122 8OY 201 B 1 
HETATM 45 H H121 8OY . . . D 2 -30.729 -13.51 -12.418 1 34.19 ? H121 8OY 201 B 1 
HETATM 46 H H131 8OY . . . D 2 -34.686 -12.365 -11.859 1 27.08 ? H131 8OY 201 B 1 
HETATM 47 H H141 8OY . . . D 2 -36.055 -10.675 -12.81 1 27.51 ? H141 8OY 201 B 1 
HETATM 48 H H151 8OY . . . D 2 -36.335 -10.53 -15.039 1 27.72 ? H151 8OY 201 B 1 
HETATM 49 H H161 8OY . . . D 2 -34.067 -13.841 -17.111 1 26.32 ? H161 8OY 201 B 1 
HETATM 50 H H181 8OY . . . D 2 -34.542 -11.917 -20.016 1 24.32 ? H181 8OY 201 B 1 
HETATM 51 H H191 8OY . . . D 2 -34.035 -12.57 -22.116 1 24.55 ? H191 8OY 201 B 1 
HETATM 52 H H241 8OY . . . D 2 -33.194 -16.202 -20.867 1 23.78 ? H241 8OY 201 B 1 
HETATM 53 H H261 8OY . . . D 2 -34.162 -15.845 -17.583 1 24.84 ? H261 8OY 201 B 1 
HETATM 54 H H281 8OY . . . D 2 -31.053 -15.683 -18.538 1 28.35 ? H281 8OY 201 B 1 
HETATM 55 H H291 8OY . . . D 2 -29.317 -17.183 -18.247 1 29.22 ? H291 8OY 201 B 1 
HETATM 56 H H301 8OY . . . D 2 -29.707 -19.392 -17.601 1 30.19 ? H301 8OY 201 B 1 
HETATM 57 H H321 8OY . . . D 2 -33.735 -18.575 -17.533 1 27.9 ? H321 8OY 201 B 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           57 
#