data_5V5J
#
_model_server_result.job_id            u_MUzjbP85yAas9jAc4J3A 
_model_server_result.datetime_utc      '2024-11-25 09:53:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":207}' 
#
_entry.id    5V5J 
#
_exptl.entry_id    5V5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V5J 
_cell.length_a            58.581 
_cell.length_b            67.018 
_cell.length_c            68.448 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 N N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 89 A HIS 89 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc2 C FE HEM . A HEM 201 1_555 F O2 OXY . A OXY 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc3 B NE2 HIS 89 B HIS 89 1_555 L FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? 
metalc ? metalc4 L FE HEM . B HEM 201 1_555 M O1 OXY . B OXY 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     5V5J 
_atom_sites.fract_transf_matrix[1][1]    0.01707 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014921 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 201 139 HEM HEM . 
D 3 SO4 A 1 202 1 SO4 SO4 . 
E 3 SO4 A 1 203 2 SO4 SO4 . 
F 4 OXY A 1 204 1 OXY OXY . 
G 5 GOL A 1 205 2 GOL GOL . 
H 5 GOL A 1 206 3 GOL GOL . 
I 5 GOL A 1 207 5 GOL GOL . 
J 5 GOL A 1 208 6 GOL GOL . 
K 5 GOL A 1 209 7 GOL GOL . 
L 2 HEM B 1 201 139 HEM HEM . 
M 4 OXY B 1 202 2 OXY OXY . 
N 5 GOL B 1 203 1 GOL GOL . 
O 5 GOL B 1 204 4 GOL GOL . 
P 6 HOH A 1 301 167 HOH HOH . 
P 6 HOH A 2 302 125 HOH HOH . 
P 6 HOH A 3 303 59 HOH HOH . 
P 6 HOH A 4 304 96 HOH HOH . 
P 6 HOH A 5 305 106 HOH HOH . 
P 6 HOH A 6 306 95 HOH HOH . 
P 6 HOH A 7 307 147 HOH HOH . 
P 6 HOH A 8 308 9 HOH HOH . 
P 6 HOH A 9 309 152 HOH HOH . 
P 6 HOH A 10 310 58 HOH HOH . 
P 6 HOH A 11 311 56 HOH HOH . 
P 6 HOH A 12 312 104 HOH HOH . 
P 6 HOH A 13 313 17 HOH HOH . 
P 6 HOH A 14 314 173 HOH HOH . 
P 6 HOH A 15 315 80 HOH HOH . 
P 6 HOH A 16 316 44 HOH HOH . 
P 6 HOH A 17 317 61 HOH HOH . 
P 6 HOH A 18 318 65 HOH HOH . 
P 6 HOH A 19 319 47 HOH HOH . 
P 6 HOH A 20 320 14 HOH HOH . 
P 6 HOH A 21 321 12 HOH HOH . 
P 6 HOH A 22 322 18 HOH HOH . 
P 6 HOH A 23 323 145 HOH HOH . 
P 6 HOH A 24 324 180 HOH HOH . 
P 6 HOH A 25 325 32 HOH HOH . 
P 6 HOH A 26 326 129 HOH HOH . 
P 6 HOH A 27 327 127 HOH HOH . 
P 6 HOH A 28 328 64 HOH HOH . 
P 6 HOH A 29 329 7 HOH HOH . 
P 6 HOH A 30 330 83 HOH HOH . 
P 6 HOH A 31 331 99 HOH HOH . 
P 6 HOH A 32 332 197 HOH HOH . 
P 6 HOH A 33 333 30 HOH HOH . 
P 6 HOH A 34 334 4 HOH HOH . 
P 6 HOH A 35 335 62 HOH HOH . 
P 6 HOH A 36 336 35 HOH HOH . 
P 6 HOH A 37 337 100 HOH HOH . 
P 6 HOH A 38 338 40 HOH HOH . 
P 6 HOH A 39 339 8 HOH HOH . 
P 6 HOH A 40 340 1 HOH HOH . 
P 6 HOH A 41 341 29 HOH HOH . 
P 6 HOH A 42 342 24 HOH HOH . 
P 6 HOH A 43 343 136 HOH HOH . 
P 6 HOH A 44 344 37 HOH HOH . 
P 6 HOH A 45 345 15 HOH HOH . 
P 6 HOH A 46 346 123 HOH HOH . 
P 6 HOH A 47 347 55 HOH HOH . 
P 6 HOH A 48 348 22 HOH HOH . 
P 6 HOH A 49 349 183 HOH HOH . 
P 6 HOH A 50 350 41 HOH HOH . 
P 6 HOH A 51 351 36 HOH HOH . 
P 6 HOH A 52 352 101 HOH HOH . 
P 6 HOH A 53 353 68 HOH HOH . 
P 6 HOH A 54 354 73 HOH HOH . 
P 6 HOH A 55 355 98 HOH HOH . 
P 6 HOH A 56 356 25 HOH HOH . 
P 6 HOH A 57 357 112 HOH HOH . 
P 6 HOH A 58 358 74 HOH HOH . 
P 6 HOH A 59 359 124 HOH HOH . 
P 6 HOH A 60 360 34 HOH HOH . 
P 6 HOH A 61 361 46 HOH HOH . 
P 6 HOH A 62 362 122 HOH HOH . 
P 6 HOH A 63 363 5 HOH HOH . 
P 6 HOH A 64 364 192 HOH HOH . 
P 6 HOH A 65 365 75 HOH HOH . 
P 6 HOH A 66 366 85 HOH HOH . 
P 6 HOH A 67 367 199 HOH HOH . 
P 6 HOH A 68 368 53 HOH HOH . 
P 6 HOH A 69 369 202 HOH HOH . 
P 6 HOH A 70 370 128 HOH HOH . 
P 6 HOH A 71 371 117 HOH HOH . 
P 6 HOH A 72 372 115 HOH HOH . 
P 6 HOH A 73 373 131 HOH HOH . 
P 6 HOH A 74 374 19 HOH HOH . 
P 6 HOH A 75 375 97 HOH HOH . 
P 6 HOH A 76 376 138 HOH HOH . 
P 6 HOH A 77 377 161 HOH HOH . 
P 6 HOH A 78 378 156 HOH HOH . 
P 6 HOH A 79 379 88 HOH HOH . 
P 6 HOH A 80 380 200 HOH HOH . 
P 6 HOH A 81 381 181 HOH HOH . 
P 6 HOH A 82 382 67 HOH HOH . 
P 6 HOH A 83 383 182 HOH HOH . 
P 6 HOH A 84 384 110 HOH HOH . 
P 6 HOH A 85 385 113 HOH HOH . 
P 6 HOH A 86 386 102 HOH HOH . 
P 6 HOH A 87 387 179 HOH HOH . 
P 6 HOH A 88 388 162 HOH HOH . 
P 6 HOH A 89 389 72 HOH HOH . 
P 6 HOH A 90 390 139 HOH HOH . 
P 6 HOH A 91 391 77 HOH HOH . 
P 6 HOH A 92 392 108 HOH HOH . 
P 6 HOH A 93 393 141 HOH HOH . 
P 6 HOH A 94 394 94 HOH HOH . 
P 6 HOH A 95 395 82 HOH HOH . 
P 6 HOH A 96 396 151 HOH HOH . 
Q 6 HOH B 1 301 91 HOH HOH . 
Q 6 HOH B 2 302 33 HOH HOH . 
Q 6 HOH B 3 303 195 HOH HOH . 
Q 6 HOH B 4 304 198 HOH HOH . 
Q 6 HOH B 5 305 86 HOH HOH . 
Q 6 HOH B 6 306 42 HOH HOH . 
Q 6 HOH B 7 307 76 HOH HOH . 
Q 6 HOH B 8 308 149 HOH HOH . 
Q 6 HOH B 9 309 103 HOH HOH . 
Q 6 HOH B 10 310 50 HOH HOH . 
Q 6 HOH B 11 311 142 HOH HOH . 
Q 6 HOH B 12 312 11 HOH HOH . 
Q 6 HOH B 13 313 39 HOH HOH . 
Q 6 HOH B 14 314 194 HOH HOH . 
Q 6 HOH B 15 315 49 HOH HOH . 
Q 6 HOH B 16 316 165 HOH HOH . 
Q 6 HOH B 17 317 48 HOH HOH . 
Q 6 HOH B 18 318 16 HOH HOH . 
Q 6 HOH B 19 319 78 HOH HOH . 
Q 6 HOH B 20 320 52 HOH HOH . 
Q 6 HOH B 21 321 87 HOH HOH . 
Q 6 HOH B 22 322 28 HOH HOH . 
Q 6 HOH B 23 323 201 HOH HOH . 
Q 6 HOH B 24 324 3 HOH HOH . 
Q 6 HOH B 25 325 6 HOH HOH . 
Q 6 HOH B 26 326 143 HOH HOH . 
Q 6 HOH B 27 327 185 HOH HOH . 
Q 6 HOH B 28 328 70 HOH HOH . 
Q 6 HOH B 29 329 51 HOH HOH . 
Q 6 HOH B 30 330 133 HOH HOH . 
Q 6 HOH B 31 331 10 HOH HOH . 
Q 6 HOH B 32 332 90 HOH HOH . 
Q 6 HOH B 33 333 23 HOH HOH . 
Q 6 HOH B 34 334 174 HOH HOH . 
Q 6 HOH B 35 335 45 HOH HOH . 
Q 6 HOH B 36 336 155 HOH HOH . 
Q 6 HOH B 37 337 71 HOH HOH . 
Q 6 HOH B 38 338 26 HOH HOH . 
Q 6 HOH B 39 339 166 HOH HOH . 
Q 6 HOH B 40 340 2 HOH HOH . 
Q 6 HOH B 41 341 27 HOH HOH . 
Q 6 HOH B 42 342 63 HOH HOH . 
Q 6 HOH B 43 343 21 HOH HOH . 
Q 6 HOH B 44 344 31 HOH HOH . 
Q 6 HOH B 45 345 89 HOH HOH . 
Q 6 HOH B 46 346 205 HOH HOH . 
Q 6 HOH B 47 347 191 HOH HOH . 
Q 6 HOH B 48 348 132 HOH HOH . 
Q 6 HOH B 49 349 109 HOH HOH . 
Q 6 HOH B 50 350 20 HOH HOH . 
Q 6 HOH B 51 351 175 HOH HOH . 
Q 6 HOH B 52 352 130 HOH HOH . 
Q 6 HOH B 53 353 79 HOH HOH . 
Q 6 HOH B 54 354 120 HOH HOH . 
Q 6 HOH B 55 355 66 HOH HOH . 
Q 6 HOH B 56 356 146 HOH HOH . 
Q 6 HOH B 57 357 114 HOH HOH . 
Q 6 HOH B 58 358 54 HOH HOH . 
Q 6 HOH B 59 359 159 HOH HOH . 
Q 6 HOH B 60 360 38 HOH HOH . 
Q 6 HOH B 61 361 140 HOH HOH . 
Q 6 HOH B 62 362 154 HOH HOH . 
Q 6 HOH B 63 363 60 HOH HOH . 
Q 6 HOH B 64 364 92 HOH HOH . 
Q 6 HOH B 65 365 126 HOH HOH . 
Q 6 HOH B 66 366 81 HOH HOH . 
Q 6 HOH B 67 367 153 HOH HOH . 
Q 6 HOH B 68 368 164 HOH HOH . 
Q 6 HOH B 69 369 121 HOH HOH . 
Q 6 HOH B 70 370 57 HOH HOH . 
Q 6 HOH B 71 371 119 HOH HOH . 
Q 6 HOH B 72 372 189 HOH HOH . 
Q 6 HOH B 73 373 150 HOH HOH . 
Q 6 HOH B 74 374 93 HOH HOH . 
Q 6 HOH B 75 375 184 HOH HOH . 
Q 6 HOH B 76 376 157 HOH HOH . 
Q 6 HOH B 77 377 144 HOH HOH . 
Q 6 HOH B 78 378 134 HOH HOH . 
Q 6 HOH B 79 379 203 HOH HOH . 
Q 6 HOH B 80 380 188 HOH HOH . 
Q 6 HOH B 81 381 187 HOH HOH . 
Q 6 HOH B 82 382 177 HOH HOH . 
Q 6 HOH B 83 383 148 HOH HOH . 
Q 6 HOH B 84 384 169 HOH HOH . 
Q 6 HOH B 85 385 176 HOH HOH . 
Q 6 HOH B 86 386 160 HOH HOH . 
Q 6 HOH B 87 387 116 HOH HOH . 
Q 6 HOH B 88 388 193 HOH HOH . 
Q 6 HOH B 89 389 107 HOH HOH . 
Q 6 HOH B 90 390 206 HOH HOH . 
Q 6 HOH B 91 391 111 HOH HOH . 
Q 6 HOH B 92 392 170 HOH HOH . 
Q 6 HOH B 93 393 158 HOH HOH . 
Q 6 HOH B 94 394 137 HOH HOH . 
Q 6 HOH B 95 395 118 HOH HOH . 
Q 6 HOH B 96 396 171 HOH HOH . 
Q 6 HOH B 97 397 204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . I 5 -0.877 -11.03 -14.379 0.88 41.05 ? C1 GOL 207 A 1 
HETATM 2 O O1 GOL . . . I 5 -1.613 -10.896 -13.197 0.88 44.87 ? O1 GOL 207 A 1 
HETATM 3 C C2 GOL . . . I 5 0.367 -11.832 -14.028 0.88 42.4 ? C2 GOL 207 A 1 
HETATM 4 O O2 GOL . . . I 5 0.139 -13.165 -14.388 0.88 40.4 ? O2 GOL 207 A 1 
HETATM 5 C C3 GOL . . . I 5 1.642 -11.338 -14.704 0.88 31.16 ? C3 GOL 207 A 1 
HETATM 6 O O3 GOL . . . I 5 2.669 -11.595 -13.792 0.88 22.45 ? O3 GOL 207 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#