data_5V5Y # _model_server_result.job_id 2uvvxsfD470Rlr3AGAA5rg _model_server_result.datetime_utc '2024-11-24 12:31:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 5V5Y # _exptl.entry_id 5V5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V5Y _cell.length_a 50.08 _cell.length_b 63.1 _cell.length_c 82.46 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 156 n n S C1 DMS sing 157 n n S C2 DMS sing 158 n n C1 H11 DMS sing 159 n n C1 H12 DMS sing 160 n n C1 H13 DMS sing 161 n n C2 H21 DMS sing 162 n n C2 H22 DMS sing 163 n n C2 H23 DMS sing 164 n n # _atom_sites.entry_id 5V5Y _atom_sites.fract_transf_matrix[1][1] 0.019968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015848 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012127 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8X7 A 1 601 1 8X7 UNK . C 3 DMS A 1 602 1 DMS DMS . D 3 DMS A 1 603 2 DMS DMS . E 4 EDO A 1 604 1 EDO EDO . F 4 EDO A 1 605 2 EDO EDO . G 5 HOH A 1 701 105 HOH HOH . G 5 HOH A 2 702 34 HOH HOH . G 5 HOH A 3 703 36 HOH HOH . G 5 HOH A 4 704 4 HOH HOH . G 5 HOH A 5 705 49 HOH HOH . G 5 HOH A 6 706 106 HOH HOH . G 5 HOH A 7 707 57 HOH HOH . G 5 HOH A 8 708 65 HOH HOH . G 5 HOH A 9 709 27 HOH HOH . G 5 HOH A 10 710 25 HOH HOH . G 5 HOH A 11 711 24 HOH HOH . G 5 HOH A 12 712 61 HOH HOH . G 5 HOH A 13 713 99 HOH HOH . G 5 HOH A 14 714 50 HOH HOH . G 5 HOH A 15 715 90 HOH HOH . G 5 HOH A 16 716 21 HOH HOH . G 5 HOH A 17 717 96 HOH HOH . G 5 HOH A 18 718 37 HOH HOH . G 5 HOH A 19 719 51 HOH HOH . G 5 HOH A 20 720 22 HOH HOH . G 5 HOH A 21 721 88 HOH HOH . G 5 HOH A 22 722 19 HOH HOH . G 5 HOH A 23 723 8 HOH HOH . G 5 HOH A 24 724 67 HOH HOH . G 5 HOH A 25 725 73 HOH HOH . G 5 HOH A 26 726 2 HOH HOH . G 5 HOH A 27 727 35 HOH HOH . G 5 HOH A 28 728 69 HOH HOH . G 5 HOH A 29 729 18 HOH HOH . G 5 HOH A 30 730 72 HOH HOH . G 5 HOH A 31 731 71 HOH HOH . G 5 HOH A 32 732 63 HOH HOH . G 5 HOH A 33 733 92 HOH HOH . G 5 HOH A 34 734 41 HOH HOH . G 5 HOH A 35 735 6 HOH HOH . G 5 HOH A 36 736 64 HOH HOH . G 5 HOH A 37 737 59 HOH HOH . G 5 HOH A 38 738 81 HOH HOH . G 5 HOH A 39 739 45 HOH HOH . G 5 HOH A 40 740 43 HOH HOH . G 5 HOH A 41 741 15 HOH HOH . G 5 HOH A 42 742 103 HOH HOH . G 5 HOH A 43 743 14 HOH HOH . G 5 HOH A 44 744 48 HOH HOH . G 5 HOH A 45 745 44 HOH HOH . G 5 HOH A 46 746 39 HOH HOH . G 5 HOH A 47 747 47 HOH HOH . G 5 HOH A 48 748 11 HOH HOH . G 5 HOH A 49 749 1 HOH HOH . G 5 HOH A 50 750 12 HOH HOH . G 5 HOH A 51 751 26 HOH HOH . G 5 HOH A 52 752 9 HOH HOH . G 5 HOH A 53 753 5 HOH HOH . G 5 HOH A 54 754 28 HOH HOH . G 5 HOH A 55 755 42 HOH HOH . G 5 HOH A 56 756 7 HOH HOH . G 5 HOH A 57 757 77 HOH HOH . G 5 HOH A 58 758 38 HOH HOH . G 5 HOH A 59 759 52 HOH HOH . G 5 HOH A 60 760 87 HOH HOH . G 5 HOH A 61 761 3 HOH HOH . G 5 HOH A 62 762 10 HOH HOH . G 5 HOH A 63 763 16 HOH HOH . G 5 HOH A 64 764 91 HOH HOH . G 5 HOH A 65 765 85 HOH HOH . G 5 HOH A 66 766 40 HOH HOH . G 5 HOH A 67 767 23 HOH HOH . G 5 HOH A 68 768 31 HOH HOH . G 5 HOH A 69 769 56 HOH HOH . G 5 HOH A 70 770 30 HOH HOH . G 5 HOH A 71 771 33 HOH HOH . G 5 HOH A 72 772 58 HOH HOH . G 5 HOH A 73 773 94 HOH HOH . G 5 HOH A 74 774 83 HOH HOH . G 5 HOH A 75 775 17 HOH HOH . G 5 HOH A 76 776 20 HOH HOH . G 5 HOH A 77 777 82 HOH HOH . G 5 HOH A 78 778 89 HOH HOH . G 5 HOH A 79 779 29 HOH HOH . G 5 HOH A 80 780 55 HOH HOH . G 5 HOH A 81 781 102 HOH HOH . G 5 HOH A 82 782 75 HOH HOH . G 5 HOH A 83 783 84 HOH HOH . G 5 HOH A 84 784 107 HOH HOH . G 5 HOH A 85 785 104 HOH HOH . G 5 HOH A 86 786 46 HOH HOH . G 5 HOH A 87 787 70 HOH HOH . G 5 HOH A 88 788 68 HOH HOH . G 5 HOH A 89 789 74 HOH HOH . G 5 HOH A 90 790 66 HOH HOH . G 5 HOH A 91 791 110 HOH HOH . G 5 HOH A 92 792 97 HOH HOH . G 5 HOH A 93 793 32 HOH HOH . G 5 HOH A 94 794 78 HOH HOH . G 5 HOH A 95 795 101 HOH HOH . G 5 HOH A 96 796 60 HOH HOH . G 5 HOH A 97 797 93 HOH HOH . G 5 HOH A 98 798 100 HOH HOH . G 5 HOH A 99 799 108 HOH HOH . G 5 HOH A 100 800 62 HOH HOH . G 5 HOH A 101 801 54 HOH HOH . G 5 HOH A 102 802 76 HOH HOH . G 5 HOH A 103 803 95 HOH HOH . G 5 HOH A 104 804 86 HOH HOH . G 5 HOH A 105 805 13 HOH HOH . G 5 HOH A 106 806 109 HOH HOH . G 5 HOH A 107 807 80 HOH HOH . G 5 HOH A 108 808 98 HOH HOH . G 5 HOH A 109 809 53 HOH HOH . G 5 HOH A 110 810 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 3 23.611 -13.139 -0.45 1 65.7 ? S DMS 603 A 1 HETATM 2 O O DMS . . . D 3 22.814 -12.216 0.411 1 65.38 ? O DMS 603 A 1 HETATM 3 C C1 DMS . . . D 3 22.592 -14.554 -0.941 1 65.41 ? C1 DMS 603 A 1 HETATM 4 C C2 DMS . . . D 3 23.866 -12.424 -2.096 1 65.39 ? C2 DMS 603 A 1 HETATM 5 H H11 DMS . . . D 3 21.706 -14.207 -1.405 1 78.49 ? H11 DMS 603 A 1 HETATM 6 H H12 DMS . . . D 3 22.342 -15.123 -0.083 1 78.49 ? H12 DMS 603 A 1 HETATM 7 H H13 DMS . . . D 3 23.132 -15.16 -1.621 1 78.49 ? H13 DMS 603 A 1 HETATM 8 H H21 DMS . . . D 3 24.462 -11.552 -2.014 1 78.47 ? H21 DMS 603 A 1 HETATM 9 H H22 DMS . . . D 3 22.929 -12.172 -2.521 1 78.47 ? H22 DMS 603 A 1 HETATM 10 H H23 DMS . . . D 3 24.357 -13.129 -2.716 1 78.47 ? H23 DMS 603 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #