data_5V5Z # _model_server_result.job_id Q3oVlxbscRPnajm09HfvwA _model_server_result.datetime_utc '2024-10-13 13:11:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v5z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5V5Z # _exptl.entry_id 5V5Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 705.633 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec 1.14.13.70 # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V5Z _cell.length_a 91.94 _cell.length_b 92.51 _cell.length_c 101.53 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V5Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 470 A CYS 470 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N39 1YN . A 1YN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'C35 H38 Cl2 N8 O4' _chem_comp.formula_weight 705.633 _chem_comp.id 1YN _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2R)-butan-2-yl]-4-{4-[4-(4-{[(2R,4S)-2-(2,4-dichlorophenyl)-2-(1H-1,2,4-triazol-1-ylmethyl)-1,3-dioxolan-4-yl]methoxy}phenyl)piperazin-1-yl]phenyl}-2,4-dihydro-3H-1,2,4-triazol-3-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Itraconazole # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL8 C45 1YN sing 1 n n C45 C44 1YN doub 2 n y C45 C46 1YN sing 3 n y C44 C43 1YN sing 4 n y C46 C47 1YN doub 5 n y C43 CL9 1YN sing 6 n n C43 C42 1YN doub 7 n y C47 C42 1YN sing 8 n y C42 C34 1YN sing 9 n n O33 C32 1YN sing 10 n n O33 C34 1YN sing 11 n n C32 C31 1YN sing 12 n n C34 O35 1YN sing 13 n n C34 C36 1YN sing 14 n n C31 O35 1YN sing 15 n n C31 C30 1YN sing 16 n n C36 N37 1YN sing 17 n n O29 C30 1YN sing 18 n n O29 C26 1YN sing 19 n n N37 N41 1YN sing 20 n y N37 C38 1YN sing 21 n y N41 C40 1YN doub 22 n y C25 C26 1YN doub 23 n y C25 C24 1YN sing 24 n y C26 C27 1YN sing 25 n y C40 N39 1YN sing 26 n y C01 C02 1YN sing 27 n n C38 N39 1YN doub 28 n y C24 C23 1YN doub 29 n y C27 C28 1YN doub 30 n y C23 C28 1YN sing 31 n y C23 N20 1YN sing 32 n n C02 C03 1YN sing 33 n n N20 C19 1YN sing 34 n n N20 C21 1YN sing 35 n n C18 C19 1YN sing 36 n n C18 N17 1YN sing 37 n n C12 C13 1YN doub 38 n y C12 C11 1YN sing 39 n y C13 C14 1YN sing 40 n y C22 C21 1YN sing 41 n n C22 N17 1YN sing 42 n n N10 C09 1YN doub 43 n n N10 N05 1YN sing 44 n n C09 N08 1YN sing 45 n n C03 N05 1YN sing 46 n n C03 C04 1YN sing 47 n n N05 C06 1YN sing 48 n n C11 N08 1YN sing 49 n n C11 C16 1YN doub 50 n y O07 C06 1YN doub 51 n n C14 N17 1YN sing 52 n n C14 C15 1YN doub 53 n y N08 C06 1YN sing 54 n n C16 C15 1YN sing 55 n y C12 H1 1YN sing 56 n n C01 H2 1YN sing 57 n n C01 H3 1YN sing 58 n n C01 H4 1YN sing 59 n n C02 H5 1YN sing 60 n n C02 H6 1YN sing 61 n n C03 H7 1YN sing 62 n n C04 H8 1YN sing 63 n n C04 H9 1YN sing 64 n n C04 H10 1YN sing 65 n n C09 H11 1YN sing 66 n n C13 H12 1YN sing 67 n n C15 H13 1YN sing 68 n n C16 H14 1YN sing 69 n n C18 H15 1YN sing 70 n n C18 H16 1YN sing 71 n n C19 H17 1YN sing 72 n n C19 H18 1YN sing 73 n n C21 H19 1YN sing 74 n n C21 H20 1YN sing 75 n n C22 H21 1YN sing 76 n n C22 H22 1YN sing 77 n n C24 H23 1YN sing 78 n n C25 H24 1YN sing 79 n n C27 H25 1YN sing 80 n n C28 H26 1YN sing 81 n n C30 H27 1YN sing 82 n n C30 H28 1YN sing 83 n n C31 H29 1YN sing 84 n n C32 H30 1YN sing 85 n n C32 H31 1YN sing 86 n n C36 H32 1YN sing 87 n n C36 H33 1YN sing 88 n n C38 H34 1YN sing 89 n n C40 H35 1YN sing 90 n n C44 H36 1YN sing 91 n n C46 H37 1YN sing 92 n n C47 H38 1YN sing 93 n n # _atom_sites.entry_id 5V5Z _atom_sites.fract_transf_matrix[1][1] 0.010877 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009849 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 1YN A 1 602 701 1YN 1YN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 1YN . . . C 3 -34.683 -23.108 30.302 1 102.03 ? C12 1YN 602 A 1 HETATM 2 C C11 1YN . . . C 3 -33.376 -23.036 30.75 1 106.7 ? C11 1YN 602 A 1 HETATM 3 C C01 1YN . . . C 3 -31.878 -27.447 28.12 1 97.86 ? C01 1YN 602 A 1 HETATM 4 C C02 1YN . . . C 3 -31.18 -27.974 29.38 1 101.06 ? C02 1YN 602 A 1 HETATM 5 C C03 1YN . . . C 3 -31.965 -27.751 30.736 1 112.44 ? C03 1YN 602 A 1 HETATM 6 C C04 1YN . . . C 3 -31.316 -28.445 31.924 1 106.04 ? C04 1YN 602 A 1 HETATM 7 N N05 1YN . . . C 3 -32.065 -26.297 31.034 1 120.36 ? N05 1YN 602 A 1 HETATM 8 C C06 1YN . . . C 3 -33.092 -25.507 30.637 1 115.75 ? C06 1YN 602 A 1 HETATM 9 O O07 1YN . . . C 3 -34.14 -25.826 30.098 1 111.04 ? O07 1YN 602 A 1 HETATM 10 N N08 1YN . . . C 3 -32.639 -24.247 30.99 1 111.15 ? N08 1YN 602 A 1 HETATM 11 C C09 1YN . . . C 3 -31.41 -24.328 31.603 1 106.94 ? C09 1YN 602 A 1 HETATM 12 N N10 1YN . . . C 3 -31.037 -25.621 31.646 1 112.64 ? N10 1YN 602 A 1 HETATM 13 C C13 1YN . . . C 3 -35.323 -21.976 29.841 1 96.61 ? C13 1YN 602 A 1 HETATM 14 C C14 1YN . . . C 3 -34.662 -20.759 29.814 1 96.13 ? C14 1YN 602 A 1 HETATM 15 C C15 1YN . . . C 3 -33.356 -20.684 30.289 1 99.31 ? C15 1YN 602 A 1 HETATM 16 C C16 1YN . . . C 3 -32.72 -21.817 30.764 1 103.95 ? C16 1YN 602 A 1 HETATM 17 N N17 1YN . . . C 3 -35.271 -19.674 29.295 1 88.17 ? N17 1YN 602 A 1 HETATM 18 C C18 1YN . . . C 3 -36.733 -19.655 29.321 1 80.11 ? C18 1YN 602 A 1 HETATM 19 C C19 1YN . . . C 3 -37.236 -18.744 28.247 1 77.89 ? C19 1YN 602 A 1 HETATM 20 N N20 1YN . . . C 3 -36.645 -17.412 28.395 1 89.44 ? N20 1YN 602 A 1 HETATM 21 C C21 1YN . . . C 3 -35.183 -17.403 28.483 1 85.79 ? C21 1YN 602 A 1 HETATM 22 C C22 1YN . . . C 3 -34.707 -18.35 29.545 1 80.86 ? C22 1YN 602 A 1 HETATM 23 C C23 1YN . . . C 3 -37.192 -16.441 27.608 1 85.19 ? C23 1YN 602 A 1 HETATM 24 C C24 1YN . . . C 3 -38.22 -16.746 26.732 1 76.85 ? C24 1YN 602 A 1 HETATM 25 C C25 1YN . . . C 3 -38.783 -15.766 25.938 1 71.94 ? C25 1YN 602 A 1 HETATM 26 C C26 1YN . . . C 3 -38.323 -14.468 26.017 1 71.59 ? C26 1YN 602 A 1 HETATM 27 C C27 1YN . . . C 3 -37.298 -14.148 26.887 1 75.42 ? C27 1YN 602 A 1 HETATM 28 C C28 1YN . . . C 3 -36.733 -15.133 27.675 1 78.14 ? C28 1YN 602 A 1 HETATM 29 O O29 1YN . . . C 3 -38.944 -13.584 25.166 1 75.49 ? O29 1YN 602 A 1 HETATM 30 C C30 1YN . . . C 3 -38.561 -12.204 25.181 1 63.45 ? C30 1YN 602 A 1 HETATM 31 C C31 1YN . . . C 3 -38.991 -11.578 23.878 1 58.62 ? C31 1YN 602 A 1 HETATM 32 C C32 1YN . . . C 3 -38.488 -12.349 22.68 1 63.54 ? C32 1YN 602 A 1 HETATM 33 O O33 1YN . . . C 3 -39.531 -13.24 22.401 1 61.71 ? O33 1YN 602 A 1 HETATM 34 C C34 1YN . . . C 3 -40.735 -12.536 22.659 1 56.55 ? C34 1YN 602 A 1 HETATM 35 O O35 1YN . . . C 3 -40.429 -11.59 23.687 1 54.21 ? O35 1YN 602 A 1 HETATM 36 C C36 1YN . . . C 3 -41.697 -13.494 23.312 1 50.08 ? C36 1YN 602 A 1 HETATM 37 N N37 1YN . . . C 3 -43.01 -12.864 23.281 1 54.37 ? N37 1YN 602 A 1 HETATM 38 C C38 1YN . . . C 3 -43.402 -11.715 23.807 1 51.15 ? C38 1YN 602 A 1 HETATM 39 N N39 1YN . . . C 3 -44.687 -11.537 23.624 1 46.79 ? N39 1YN 602 A 1 HETATM 40 C C40 1YN . . . C 3 -45.039 -12.638 22.944 1 50.66 ? C40 1YN 602 A 1 HETATM 41 N N41 1YN . . . C 3 -44.065 -13.482 22.701 1 55.28 ? N41 1YN 602 A 1 HETATM 42 C C42 1YN . . . C 3 -41.23 -11.991 21.288 1 56.72 ? C42 1YN 602 A 1 HETATM 43 C C43 1YN . . . C 3 -41.542 -12.841 20.221 1 57.81 ? C43 1YN 602 A 1 HETATM 44 C C44 1YN . . . C 3 -41.964 -12.358 19 1 66.43 ? C44 1YN 602 A 1 HETATM 45 C C45 1YN . . . C 3 -42.034 -10.999 18.812 1 63.7 ? C45 1YN 602 A 1 HETATM 46 C C46 1YN . . . C 3 -41.754 -10.118 19.835 1 59.83 ? C46 1YN 602 A 1 HETATM 47 C C47 1YN . . . C 3 -41.357 -10.621 21.063 1 61.89 ? C47 1YN 602 A 1 HETATM 48 CL CL8 1YN . . . C 3 -42.366 -10.395 17.214 1 60.73 ? CL8 1YN 602 A 1 HETATM 49 CL CL9 1YN . . . C 3 -41.319 -14.556 20.323 1 96.07 ? CL9 1YN 602 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #