data_5V60
#
_model_server_result.job_id            ev2-EcVqVQH6tLgRr4rdEQ 
_model_server_result.datetime_utc      '2024-11-29 03:17:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v60 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":408}' 
#
_entry.id    5V60 
#
_exptl.entry_id    5V60 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V60 
_cell.length_a            41.757 
_cell.length_b            78.516 
_cell.length_c            152.566 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V60 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 180 A LEU 184 1_555 A N TPO 181 A TPO 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C TPO 181 A TPO 185 1_555 A N GLU 182 A GLU 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C GLU 182 A GLU 186 1_555 A N PTR 183 A PTR 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale4 A C PTR 183 A PTR 187 1_555 A N VAL 184 A VAL 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 A OD1 ASN 150 A ASN 154 1_555 I MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc2 A OD2 ASP 163 A ASP 167 1_555 I MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc3 A OD1 ASP 163 A ASP 167 1_555 J MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc4 A OD2 ASP 163 A ASP 167 1_555 J MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? 
metalc ? metalc5 B O2G ACP . A ACP 401 1_555 I MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? 
metalc ? metalc6 B O2A ACP . A ACP 401 1_555 I MG MG . A MG 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc7 B O1G ACP . A ACP 401 1_555 J MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? 
metalc ? metalc8 B O2G ACP . A ACP 401 1_555 J MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc9 B O2B ACP . A ACP 401 1_555 J MG MG . A MG 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc10 I MG MG . A MG 408 1_555 K O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc11 I MG MG . A MG 408 1_555 K O HOH . A HOH 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc12 J MG MG . A MG 409 1_555 K O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc13 J MG MG . A MG 409 1_555 K O HOH . A HOH 552 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5V60 
_atom_sites.fract_transf_matrix[1][1]    0.023948 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012736 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006555 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACP A 1 401 1 ACP ACP . 
C 3 GOL A 1 402 1 GOL GOL . 
D 3 GOL A 1 403 2 GOL GOL . 
E 3 GOL A 1 404 3 GOL GOL . 
F 3 GOL A 1 405 4 GOL GOL . 
G 3 GOL A 1 406 5 GOL GOL . 
H 3 GOL A 1 407 6 GOL GOL . 
I 4 MG A 1 408 1 MG MG . 
J 4 MG A 1 409 2 MG MG . 
K 5 HOH A 1 501 168 HOH HOH . 
K 5 HOH A 2 502 173 HOH HOH . 
K 5 HOH A 3 503 162 HOH HOH . 
K 5 HOH A 4 504 123 HOH HOH . 
K 5 HOH A 5 505 118 HOH HOH . 
K 5 HOH A 6 506 29 HOH HOH . 
K 5 HOH A 7 507 164 HOH HOH . 
K 5 HOH A 8 508 172 HOH HOH . 
K 5 HOH A 9 509 128 HOH HOH . 
K 5 HOH A 10 510 15 HOH HOH . 
K 5 HOH A 11 511 12 HOH HOH . 
K 5 HOH A 12 512 13 HOH HOH . 
K 5 HOH A 13 513 174 HOH HOH . 
K 5 HOH A 14 514 42 HOH HOH . 
K 5 HOH A 15 515 132 HOH HOH . 
K 5 HOH A 16 516 17 HOH HOH . 
K 5 HOH A 17 517 49 HOH HOH . 
K 5 HOH A 18 518 142 HOH HOH . 
K 5 HOH A 19 519 129 HOH HOH . 
K 5 HOH A 20 520 130 HOH HOH . 
K 5 HOH A 21 521 122 HOH HOH . 
K 5 HOH A 22 522 24 HOH HOH . 
K 5 HOH A 23 523 8 HOH HOH . 
K 5 HOH A 24 524 10 HOH HOH . 
K 5 HOH A 25 525 131 HOH HOH . 
K 5 HOH A 26 526 45 HOH HOH . 
K 5 HOH A 27 527 149 HOH HOH . 
K 5 HOH A 28 528 65 HOH HOH . 
K 5 HOH A 29 529 59 HOH HOH . 
K 5 HOH A 30 530 14 HOH HOH . 
K 5 HOH A 31 531 146 HOH HOH . 
K 5 HOH A 32 532 126 HOH HOH . 
K 5 HOH A 33 533 145 HOH HOH . 
K 5 HOH A 34 534 22 HOH HOH . 
K 5 HOH A 35 535 18 HOH HOH . 
K 5 HOH A 36 536 166 HOH HOH . 
K 5 HOH A 37 537 156 HOH HOH . 
K 5 HOH A 38 538 160 HOH HOH . 
K 5 HOH A 39 539 51 HOH HOH . 
K 5 HOH A 40 540 27 HOH HOH . 
K 5 HOH A 41 541 66 HOH HOH . 
K 5 HOH A 42 542 30 HOH HOH . 
K 5 HOH A 43 543 139 HOH HOH . 
K 5 HOH A 44 544 127 HOH HOH . 
K 5 HOH A 45 545 16 HOH HOH . 
K 5 HOH A 46 546 140 HOH HOH . 
K 5 HOH A 47 547 136 HOH HOH . 
K 5 HOH A 48 548 144 HOH HOH . 
K 5 HOH A 49 549 58 HOH HOH . 
K 5 HOH A 50 550 167 HOH HOH . 
K 5 HOH A 51 551 137 HOH HOH . 
K 5 HOH A 52 552 170 HOH HOH . 
K 5 HOH A 53 553 2 HOH HOH . 
K 5 HOH A 54 554 81 HOH HOH . 
K 5 HOH A 55 555 158 HOH HOH . 
K 5 HOH A 56 556 157 HOH HOH . 
K 5 HOH A 57 557 135 HOH HOH . 
K 5 HOH A 58 558 150 HOH HOH . 
K 5 HOH A 59 559 92 HOH HOH . 
K 5 HOH A 60 560 161 HOH HOH . 
K 5 HOH A 61 561 35 HOH HOH . 
K 5 HOH A 62 562 124 HOH HOH . 
K 5 HOH A 63 563 125 HOH HOH . 
K 5 HOH A 64 564 4 HOH HOH . 
K 5 HOH A 65 565 171 HOH HOH . 
K 5 HOH A 66 566 133 HOH HOH . 
K 5 HOH A 67 567 120 HOH HOH . 
K 5 HOH A 68 568 6 HOH HOH . 
K 5 HOH A 69 569 121 HOH HOH . 
K 5 HOH A 70 570 119 HOH HOH . 
K 5 HOH A 71 571 159 HOH HOH . 
K 5 HOH A 72 572 90 HOH HOH . 
K 5 HOH A 73 573 165 HOH HOH . 
K 5 HOH A 74 574 163 HOH HOH . 
K 5 HOH A 75 575 155 HOH HOH . 
K 5 HOH A 76 576 28 HOH HOH . 
K 5 HOH A 77 577 134 HOH HOH . 
K 5 HOH A 78 578 138 HOH HOH . 
K 5 HOH A 79 579 154 HOH HOH . 
K 5 HOH A 80 580 141 HOH HOH . 
K 5 HOH A 81 581 148 HOH HOH . 
K 5 HOH A 82 582 143 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               12.447 
_atom_site.Cartn_y               15.418 
_atom_site.Cartn_z               19.681 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.95 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           408 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           51 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           1168 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           1 
#