data_5V61
#
_model_server_result.job_id            Eha_bbKcjCxNBblWUTkrHg 
_model_server_result.datetime_utc      '2024-10-11 02:22:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v61 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    5V61 
#
_exptl.entry_id    5V61 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V61 
_cell.length_a            42.217 
_cell.length_b            78.328 
_cell.length_c            152.187 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V61 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 180 A LEU 184 1_555 A N TPO 181 A TPO 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C TPO 181 A TPO 185 1_555 A N GLU 182 A GLU 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale3 A C GLU 182 A GLU 186 1_555 A N PTR 183 A PTR 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C PTR 183 A PTR 187 1_555 A N VAL 184 A VAL 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale5 B N THR 1 I THR 711 1_555 G C15 90A . I 90A 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? 
covale ? covale6 F N29 FRZ . I FRZ 801 1_555 G C6 90A . I 90A 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 216 n n 
C1 C2 GOL sing 217 n n 
C1 H11 GOL sing 218 n n 
C1 H12 GOL sing 219 n n 
O1 HO1 GOL sing 220 n n 
C2 O2 GOL sing 221 n n 
C2 C3 GOL sing 222 n n 
C2 H2 GOL sing 223 n n 
O2 HO2 GOL sing 224 n n 
C3 O3 GOL sing 225 n n 
C3 H31 GOL sing 226 n n 
C3 H32 GOL sing 227 n n 
O3 HO3 GOL sing 228 n n 
#
_atom_sites.entry_id                     5V61 
_atom_sites.fract_transf_matrix[1][1]    0.023687 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012767 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006571 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 401 401 GOL GOL . 
D 3 GOL A 1 402 402 GOL GOL . 
E 3 GOL A 1 403 403 GOL GOL . 
F 4 FRZ I 1 801 709 FRZ FRZ . 
G 5 90A I 1 802 710 90A 90A . 
H 6 HOH A 1 501 501 HOH HOH . 
H 6 HOH A 2 502 502 HOH HOH . 
H 6 HOH A 3 503 503 HOH HOH . 
H 6 HOH A 4 504 504 HOH HOH . 
H 6 HOH A 5 505 505 HOH HOH . 
H 6 HOH A 6 506 506 HOH HOH . 
H 6 HOH A 7 507 507 HOH HOH . 
H 6 HOH A 8 508 508 HOH HOH . 
H 6 HOH A 9 509 509 HOH HOH . 
H 6 HOH A 10 510 510 HOH HOH . 
H 6 HOH A 11 511 511 HOH HOH . 
H 6 HOH A 12 512 512 HOH HOH . 
H 6 HOH A 13 513 513 HOH HOH . 
H 6 HOH A 14 514 514 HOH HOH . 
H 6 HOH A 15 515 515 HOH HOH . 
H 6 HOH A 16 516 516 HOH HOH . 
H 6 HOH A 17 517 517 HOH HOH . 
H 6 HOH A 18 518 518 HOH HOH . 
H 6 HOH A 19 519 519 HOH HOH . 
H 6 HOH A 20 520 520 HOH HOH . 
H 6 HOH A 21 521 521 HOH HOH . 
H 6 HOH A 22 522 522 HOH HOH . 
H 6 HOH A 23 523 523 HOH HOH . 
H 6 HOH A 24 524 524 HOH HOH . 
H 6 HOH A 25 525 525 HOH HOH . 
H 6 HOH A 26 526 526 HOH HOH . 
H 6 HOH A 27 527 527 HOH HOH . 
H 6 HOH A 28 528 528 HOH HOH . 
H 6 HOH A 29 529 529 HOH HOH . 
H 6 HOH A 30 530 530 HOH HOH . 
H 6 HOH A 31 531 531 HOH HOH . 
H 6 HOH A 32 532 532 HOH HOH . 
H 6 HOH A 33 533 533 HOH HOH . 
H 6 HOH A 34 534 534 HOH HOH . 
H 6 HOH A 35 535 535 HOH HOH . 
H 6 HOH A 36 536 536 HOH HOH . 
H 6 HOH A 37 537 537 HOH HOH . 
H 6 HOH A 38 538 538 HOH HOH . 
H 6 HOH A 39 539 539 HOH HOH . 
H 6 HOH A 40 540 540 HOH HOH . 
H 6 HOH A 41 541 541 HOH HOH . 
H 6 HOH A 42 542 542 HOH HOH . 
H 6 HOH A 43 543 543 HOH HOH . 
H 6 HOH A 44 544 544 HOH HOH . 
H 6 HOH A 45 545 545 HOH HOH . 
H 6 HOH A 46 546 546 HOH HOH . 
H 6 HOH A 47 547 547 HOH HOH . 
H 6 HOH A 48 548 548 HOH HOH . 
H 6 HOH A 49 549 549 HOH HOH . 
H 6 HOH A 50 550 550 HOH HOH . 
H 6 HOH A 51 551 551 HOH HOH . 
H 6 HOH A 52 552 552 HOH HOH . 
H 6 HOH A 53 553 553 HOH HOH . 
H 6 HOH A 54 554 554 HOH HOH . 
H 6 HOH A 55 555 555 HOH HOH . 
H 6 HOH A 56 556 556 HOH HOH . 
H 6 HOH A 57 557 557 HOH HOH . 
H 6 HOH A 58 558 558 HOH HOH . 
H 6 HOH A 59 559 559 HOH HOH . 
H 6 HOH A 60 560 560 HOH HOH . 
H 6 HOH A 61 561 561 HOH HOH . 
H 6 HOH A 62 562 562 HOH HOH . 
H 6 HOH A 63 563 563 HOH HOH . 
H 6 HOH A 64 564 564 HOH HOH . 
H 6 HOH A 65 565 565 HOH HOH . 
H 6 HOH A 66 566 566 HOH HOH . 
H 6 HOH A 67 567 567 HOH HOH . 
H 6 HOH A 68 568 568 HOH HOH . 
H 6 HOH A 69 569 569 HOH HOH . 
H 6 HOH A 70 570 570 HOH HOH . 
H 6 HOH A 71 571 571 HOH HOH . 
H 6 HOH A 72 572 572 HOH HOH . 
H 6 HOH A 73 573 573 HOH HOH . 
H 6 HOH A 74 574 574 HOH HOH . 
H 6 HOH A 75 575 575 HOH HOH . 
H 6 HOH A 76 576 576 HOH HOH . 
H 6 HOH A 77 577 577 HOH HOH . 
H 6 HOH A 78 578 578 HOH HOH . 
H 6 HOH A 79 579 579 HOH HOH . 
H 6 HOH A 80 580 580 HOH HOH . 
H 6 HOH A 81 581 581 HOH HOH . 
H 6 HOH A 82 582 582 HOH HOH . 
H 6 HOH A 83 583 583 HOH HOH . 
H 6 HOH A 84 584 584 HOH HOH . 
H 6 HOH A 85 585 585 HOH HOH . 
H 6 HOH A 86 586 586 HOH HOH . 
H 6 HOH A 87 587 587 HOH HOH . 
H 6 HOH A 88 588 588 HOH HOH . 
H 6 HOH A 89 589 589 HOH HOH . 
H 6 HOH A 90 590 590 HOH HOH . 
H 6 HOH A 91 591 591 HOH HOH . 
I 6 HOH I 1 901 801 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 3 7.617 3.465 -30.267 1 98.85 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . E 3 6.354 2.873 -30.59 1 97.89 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . E 3 8.62 3.298 -31.413 1 95.68 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . E 3 8.775 1.915 -31.748 1 90.15 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . E 3 8.172 4.108 -32.627 1 101.35 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . E 3 8.947 5.308 -32.714 1 109.59 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#