data_5V62 # _model_server_result.job_id aeS5RoccMdhgxi7zT3ld4g _model_server_result.datetime_utc '2024-10-11 02:26:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 5V62 # _exptl.entry_id 5V62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V62 _cell.length_a 42.327 _cell.length_b 77.888 _cell.length_c 152.938 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 175 A LEU 184 1_555 A N TPO 176 A TPO 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C TPO 176 A TPO 185 1_555 A N GLU 177 A GLU 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale3 A C GLU 177 A GLU 186 1_555 A N PTR 178 A PTR 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C PTR 178 A PTR 187 1_555 A N VAL 179 A VAL 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 H N29 FRZ . A FRZ 406 1_555 I C5 AKS . A AKS 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 229 n n C1 C2 GOL sing 230 n n C1 H11 GOL sing 231 n n C1 H12 GOL sing 232 n n O1 HO1 GOL sing 233 n n C2 O2 GOL sing 234 n n C2 C3 GOL sing 235 n n C2 H2 GOL sing 236 n n O2 HO2 GOL sing 237 n n C3 O3 GOL sing 238 n n C3 H31 GOL sing 239 n n C3 H32 GOL sing 240 n n O3 HO3 GOL sing 241 n n # _atom_sites.entry_id 5V62 _atom_sites.fract_transf_matrix[1][1] 0.023626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 401 1 GOL GOL . D 3 GOL A 1 402 2 GOL GOL . E 3 GOL A 1 403 3 GOL GOL . F 3 GOL A 1 404 4 GOL GOL . G 3 GOL A 1 405 5 GOL GOL . H 4 FRZ A 1 406 709 FRZ FR1 . I 5 AKS A 1 407 710 AKS LNK . J 6 HOH A 1 501 281 HOH HOH . J 6 HOH A 2 502 25 HOH HOH . J 6 HOH A 3 503 97 HOH HOH . J 6 HOH A 4 504 74 HOH HOH . J 6 HOH A 5 505 49 HOH HOH . J 6 HOH A 6 506 209 HOH HOH . J 6 HOH A 7 507 192 HOH HOH . J 6 HOH A 8 508 279 HOH HOH . J 6 HOH A 9 509 267 HOH HOH . J 6 HOH A 10 510 92 HOH HOH . J 6 HOH A 11 511 174 HOH HOH . J 6 HOH A 12 512 211 HOH HOH . J 6 HOH A 13 513 33 HOH HOH . J 6 HOH A 14 514 286 HOH HOH . J 6 HOH A 15 515 154 HOH HOH . J 6 HOH A 16 516 263 HOH HOH . J 6 HOH A 17 517 242 HOH HOH . J 6 HOH A 18 518 236 HOH HOH . J 6 HOH A 19 519 249 HOH HOH . J 6 HOH A 20 520 88 HOH HOH . J 6 HOH A 21 521 21 HOH HOH . J 6 HOH A 22 522 165 HOH HOH . J 6 HOH A 23 523 155 HOH HOH . J 6 HOH A 24 524 143 HOH HOH . J 6 HOH A 25 525 273 HOH HOH . J 6 HOH A 26 526 280 HOH HOH . J 6 HOH A 27 527 288 HOH HOH . J 6 HOH A 28 528 248 HOH HOH . J 6 HOH A 29 529 230 HOH HOH . J 6 HOH A 30 530 68 HOH HOH . J 6 HOH A 31 531 86 HOH HOH . J 6 HOH A 32 532 170 HOH HOH . J 6 HOH A 33 533 43 HOH HOH . J 6 HOH A 34 534 195 HOH HOH . J 6 HOH A 35 535 259 HOH HOH . J 6 HOH A 36 536 199 HOH HOH . J 6 HOH A 37 537 85 HOH HOH . J 6 HOH A 38 538 69 HOH HOH . J 6 HOH A 39 539 113 HOH HOH . J 6 HOH A 40 540 8 HOH HOH . J 6 HOH A 41 541 275 HOH HOH . J 6 HOH A 42 542 124 HOH HOH . J 6 HOH A 43 543 7 HOH HOH . J 6 HOH A 44 544 200 HOH HOH . J 6 HOH A 45 545 227 HOH HOH . J 6 HOH A 46 546 39 HOH HOH . J 6 HOH A 47 547 219 HOH HOH . J 6 HOH A 48 548 44 HOH HOH . J 6 HOH A 49 549 252 HOH HOH . J 6 HOH A 50 550 274 HOH HOH . J 6 HOH A 51 551 81 HOH HOH . J 6 HOH A 52 552 20 HOH HOH . J 6 HOH A 53 553 270 HOH HOH . J 6 HOH A 54 554 234 HOH HOH . J 6 HOH A 55 555 272 HOH HOH . J 6 HOH A 56 556 72 HOH HOH . J 6 HOH A 57 557 257 HOH HOH . J 6 HOH A 58 558 261 HOH HOH . J 6 HOH A 59 559 63 HOH HOH . J 6 HOH A 60 560 119 HOH HOH . J 6 HOH A 61 561 15 HOH HOH . J 6 HOH A 62 562 67 HOH HOH . J 6 HOH A 63 563 223 HOH HOH . J 6 HOH A 64 564 157 HOH HOH . J 6 HOH A 65 565 214 HOH HOH . J 6 HOH A 66 566 133 HOH HOH . J 6 HOH A 67 567 186 HOH HOH . J 6 HOH A 68 568 27 HOH HOH . J 6 HOH A 69 569 6 HOH HOH . J 6 HOH A 70 570 76 HOH HOH . J 6 HOH A 71 571 168 HOH HOH . J 6 HOH A 72 572 196 HOH HOH . J 6 HOH A 73 573 254 HOH HOH . J 6 HOH A 74 574 266 HOH HOH . J 6 HOH A 75 575 18 HOH HOH . J 6 HOH A 76 576 271 HOH HOH . J 6 HOH A 77 577 122 HOH HOH . J 6 HOH A 78 578 128 HOH HOH . J 6 HOH A 79 579 251 HOH HOH . J 6 HOH A 80 580 38 HOH HOH . J 6 HOH A 81 581 229 HOH HOH . J 6 HOH A 82 582 110 HOH HOH . J 6 HOH A 83 583 29 HOH HOH . J 6 HOH A 84 584 250 HOH HOH . J 6 HOH A 85 585 2 HOH HOH . J 6 HOH A 86 586 17 HOH HOH . J 6 HOH A 87 587 4 HOH HOH . J 6 HOH A 88 588 80 HOH HOH . J 6 HOH A 89 589 204 HOH HOH . J 6 HOH A 90 590 37 HOH HOH . J 6 HOH A 91 591 146 HOH HOH . J 6 HOH A 92 592 65 HOH HOH . J 6 HOH A 93 593 285 HOH HOH . J 6 HOH A 94 594 10 HOH HOH . J 6 HOH A 95 595 102 HOH HOH . J 6 HOH A 96 596 11 HOH HOH . J 6 HOH A 97 597 75 HOH HOH . J 6 HOH A 98 598 282 HOH HOH . J 6 HOH A 99 599 212 HOH HOH . J 6 HOH A 100 600 3 HOH HOH . J 6 HOH A 101 601 241 HOH HOH . J 6 HOH A 102 602 193 HOH HOH . J 6 HOH A 103 603 311 HOH HOH . J 6 HOH A 104 604 136 HOH HOH . J 6 HOH A 105 605 13 HOH HOH . J 6 HOH A 106 606 301 HOH HOH . J 6 HOH A 107 607 188 HOH HOH . J 6 HOH A 108 608 238 HOH HOH . J 6 HOH A 109 609 127 HOH HOH . J 6 HOH A 110 610 108 HOH HOH . J 6 HOH A 111 611 303 HOH HOH . J 6 HOH A 112 612 159 HOH HOH . J 6 HOH A 113 613 64 HOH HOH . J 6 HOH A 114 614 147 HOH HOH . J 6 HOH A 115 615 79 HOH HOH . J 6 HOH A 116 616 276 HOH HOH . J 6 HOH A 117 617 106 HOH HOH . J 6 HOH A 118 618 34 HOH HOH . J 6 HOH A 119 619 152 HOH HOH . J 6 HOH A 120 620 264 HOH HOH . J 6 HOH A 121 621 28 HOH HOH . J 6 HOH A 122 622 60 HOH HOH . J 6 HOH A 123 623 289 HOH HOH . J 6 HOH A 124 624 12 HOH HOH . J 6 HOH A 125 625 41 HOH HOH . J 6 HOH A 126 626 118 HOH HOH . J 6 HOH A 127 627 101 HOH HOH . J 6 HOH A 128 628 42 HOH HOH . J 6 HOH A 129 629 306 HOH HOH . J 6 HOH A 130 630 222 HOH HOH . J 6 HOH A 131 631 36 HOH HOH . J 6 HOH A 132 632 9 HOH HOH . J 6 HOH A 133 633 258 HOH HOH . J 6 HOH A 134 634 87 HOH HOH . J 6 HOH A 135 635 52 HOH HOH . J 6 HOH A 136 636 45 HOH HOH . J 6 HOH A 137 637 284 HOH HOH . J 6 HOH A 138 638 208 HOH HOH . J 6 HOH A 139 639 23 HOH HOH . J 6 HOH A 140 640 292 HOH HOH . J 6 HOH A 141 641 278 HOH HOH . J 6 HOH A 142 642 134 HOH HOH . J 6 HOH A 143 643 300 HOH HOH . J 6 HOH A 144 644 220 HOH HOH . J 6 HOH A 145 645 129 HOH HOH . J 6 HOH A 146 646 308 HOH HOH . J 6 HOH A 147 647 107 HOH HOH . J 6 HOH A 148 648 105 HOH HOH . J 6 HOH A 149 649 162 HOH HOH . J 6 HOH A 150 650 26 HOH HOH . J 6 HOH A 151 651 16 HOH HOH . J 6 HOH A 152 652 291 HOH HOH . J 6 HOH A 153 653 225 HOH HOH . J 6 HOH A 154 654 19 HOH HOH . J 6 HOH A 155 655 296 HOH HOH . J 6 HOH A 156 656 176 HOH HOH . J 6 HOH A 157 657 215 HOH HOH . J 6 HOH A 158 658 32 HOH HOH . J 6 HOH A 159 659 40 HOH HOH . J 6 HOH A 160 660 58 HOH HOH . J 6 HOH A 161 661 5 HOH HOH . J 6 HOH A 162 662 304 HOH HOH . J 6 HOH A 163 663 268 HOH HOH . J 6 HOH A 164 664 66 HOH HOH . J 6 HOH A 165 665 287 HOH HOH . J 6 HOH A 166 666 235 HOH HOH . J 6 HOH A 167 667 310 HOH HOH . J 6 HOH A 168 668 206 HOH HOH . J 6 HOH A 169 669 100 HOH HOH . J 6 HOH A 170 670 126 HOH HOH . J 6 HOH A 171 671 295 HOH HOH . J 6 HOH A 172 672 178 HOH HOH . J 6 HOH A 173 673 71 HOH HOH . J 6 HOH A 174 674 54 HOH HOH . J 6 HOH A 175 675 148 HOH HOH . J 6 HOH A 176 676 172 HOH HOH . J 6 HOH A 177 677 191 HOH HOH . J 6 HOH A 178 678 24 HOH HOH . J 6 HOH A 179 679 55 HOH HOH . J 6 HOH A 180 680 35 HOH HOH . J 6 HOH A 181 681 197 HOH HOH . J 6 HOH A 182 682 283 HOH HOH . J 6 HOH A 183 683 256 HOH HOH . J 6 HOH A 184 684 31 HOH HOH . J 6 HOH A 185 685 216 HOH HOH . J 6 HOH A 186 686 50 HOH HOH . J 6 HOH A 187 687 77 HOH HOH . J 6 HOH A 188 688 1000 HOH HOH . J 6 HOH A 189 689 109 HOH HOH . J 6 HOH A 190 690 185 HOH HOH . J 6 HOH A 191 691 299 HOH HOH . J 6 HOH A 192 692 269 HOH HOH . J 6 HOH A 193 693 233 HOH HOH . J 6 HOH A 194 694 298 HOH HOH . J 6 HOH A 195 695 228 HOH HOH . J 6 HOH A 196 696 98 HOH HOH . J 6 HOH A 197 697 53 HOH HOH . J 6 HOH A 198 698 243 HOH HOH . J 6 HOH A 199 699 262 HOH HOH . J 6 HOH A 200 700 99 HOH HOH . J 6 HOH A 201 701 260 HOH HOH . J 6 HOH A 202 702 305 HOH HOH . J 6 HOH A 203 703 313 HOH HOH . J 6 HOH A 204 704 141 HOH HOH . J 6 HOH A 205 705 187 HOH HOH . J 6 HOH A 206 706 181 HOH HOH . J 6 HOH A 207 707 91 HOH HOH . J 6 HOH A 208 708 277 HOH HOH . J 6 HOH A 209 709 247 HOH HOH . J 6 HOH A 210 710 149 HOH HOH . J 6 HOH A 211 711 135 HOH HOH . J 6 HOH A 212 712 293 HOH HOH . J 6 HOH A 213 713 189 HOH HOH . J 6 HOH A 214 714 312 HOH HOH . J 6 HOH A 215 715 47 HOH HOH . J 6 HOH A 216 716 59 HOH HOH . J 6 HOH A 217 717 297 HOH HOH . J 6 HOH A 218 718 78 HOH HOH . J 6 HOH A 219 719 253 HOH HOH . J 6 HOH A 220 720 307 HOH HOH . J 6 HOH A 221 721 115 HOH HOH . J 6 HOH A 222 722 61 HOH HOH . J 6 HOH A 223 723 173 HOH HOH . J 6 HOH A 224 724 302 HOH HOH . J 6 HOH A 225 725 46 HOH HOH . J 6 HOH A 226 726 194 HOH HOH . J 6 HOH A 227 727 83 HOH HOH . J 6 HOH A 228 728 309 HOH HOH . J 6 HOH A 229 729 184 HOH HOH . J 6 HOH A 230 730 95 HOH HOH . J 6 HOH A 231 731 224 HOH HOH . J 6 HOH A 232 732 153 HOH HOH . J 6 HOH A 233 733 246 HOH HOH . J 6 HOH A 234 734 161 HOH HOH . J 6 HOH A 235 735 22 HOH HOH . J 6 HOH A 236 736 265 HOH HOH . J 6 HOH A 237 737 139 HOH HOH . J 6 HOH A 238 738 51 HOH HOH . J 6 HOH A 239 739 245 HOH HOH . J 6 HOH A 240 740 163 HOH HOH . J 6 HOH A 241 741 103 HOH HOH . J 6 HOH A 242 742 255 HOH HOH . J 6 HOH A 243 743 158 HOH HOH . J 6 HOH A 244 744 294 HOH HOH . J 6 HOH A 245 745 166 HOH HOH . J 6 HOH A 246 746 125 HOH HOH . J 6 HOH A 247 747 57 HOH HOH . J 6 HOH A 248 748 62 HOH HOH . J 6 HOH A 249 749 290 HOH HOH . J 6 HOH A 250 750 94 HOH HOH . J 6 HOH A 251 751 231 HOH HOH . J 6 HOH A 252 752 232 HOH HOH . J 6 HOH A 253 753 117 HOH HOH . J 6 HOH A 254 754 140 HOH HOH . J 6 HOH A 255 755 198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 11.487 3.713 34.588 1 86.56 ? C1 GOL 402 A 1 HETATM 2 O O1 GOL . . . D 3 11.89 3.631 33.214 1 88.35 ? O1 GOL 402 A 1 HETATM 3 C C2 GOL . . . D 3 12.473 4.579 35.379 1 85.38 ? C2 GOL 402 A 1 HETATM 4 O O2 GOL . . . D 3 12.059 4.661 36.749 1 89.37 ? O2 GOL 402 A 1 HETATM 5 C C3 GOL . . . D 3 13.889 4.009 35.324 1 81.67 ? C3 GOL 402 A 1 HETATM 6 O O3 GOL . . . D 3 14.584 4.517 34.182 1 76.27 ? O3 GOL 402 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #