data_5V67
#
_model_server_result.job_id            1j5a-5ddEoHngSKnKQoVYQ 
_model_server_result.datetime_utc      '2024-10-19 03:45:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v67 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    5V67 
#
_exptl.entry_id    5V67 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.813 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5V67 
_cell.length_a            38.24 
_cell.length_b            42.21 
_cell.length_c            93.44 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V67 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H50 N8 O3' 
_chem_comp.formula_weight    618.813 
_chem_comp.id                IBI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-{trans-4-[4-(cyclopropylmethyl)piperazin-1-yl]cyclohexyl}-4-{[(7R)-7-ethyl-5-methyl-8-(1-methylethyl)-6-oxo-5,6,7,8-tetrahydropteridin-2-yl]amino}-3-methoxybenzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Volasertib 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IBI sing 170 n n 
C1 N3 IBI sing 171 n n 
C2 N4 IBI sing 172 n n 
C5 C6 IBI sing 173 n n 
C5 N3 IBI sing 174 n n 
C6 N4 IBI sing 175 n n 
C7 C8 IBI sing 176 n n 
C7 C9 IBI sing 177 n n 
C8 C10 IBI sing 178 n n 
C11 C12 IBI sing 179 n n 
C11 C9 IBI sing 180 n n 
C12 C10 IBI sing 181 n n 
C15 C17 IBI doub 182 n y 
C15 C13 IBI sing 183 n y 
C16 C18 IBI doub 184 n y 
C16 O37 IBI sing 185 n n 
C16 C14 IBI sing 186 n y 
C17 C18 IBI sing 187 n y 
C17 C39 IBI sing 188 n n 
C21 C31 IBI sing 189 n n 
C21 N23 IBI sing 190 n n 
C21 C20 IBI sing 191 n n 
N22 C24 IBI sing 192 n n 
N22 C36 IBI sing 193 n n 
N22 C20 IBI sing 194 n n 
C24 C25 IBI doub 195 n y 
C24 C29 IBI sing 196 n y 
C31 C32 IBI sing 197 n n 
C33 C34 IBI sing 198 n n 
C33 C35 IBI sing 199 n n 
C33 N23 IBI sing 200 n n 
C38 O37 IBI sing 201 n n 
C39 O40 IBI doub 202 n n 
C39 N41 IBI sing 203 n n 
C14 N19 IBI sing 204 n n 
C14 C13 IBI doub 205 n y 
N19 C26 IBI sing 206 n n 
C26 N27 IBI doub 207 n y 
C26 N28 IBI sing 208 n y 
N27 C25 IBI sing 209 n y 
C25 N23 IBI sing 210 n n 
N28 C29 IBI doub 211 n y 
C20 O30 IBI doub 212 n n 
N41 C9 IBI sing 213 n n 
C10 N3 IBI sing 214 n n 
N4 C42 IBI sing 215 n n 
C42 C43 IBI sing 216 n n 
C43 C45 IBI sing 217 n n 
C43 C44 IBI sing 218 n n 
C45 C44 IBI sing 219 n n 
C1 H1 IBI sing 220 n n 
C1 H1A IBI sing 221 n n 
C2 H2 IBI sing 222 n n 
C2 H2A IBI sing 223 n n 
C5 H5 IBI sing 224 n n 
C5 H5A IBI sing 225 n n 
C6 H6 IBI sing 226 n n 
C6 H6A IBI sing 227 n n 
C7 H7 IBI sing 228 n n 
C7 H7A IBI sing 229 n n 
C8 H8 IBI sing 230 n n 
C8 H8A IBI sing 231 n n 
C11 H11 IBI sing 232 n n 
C11 H11A IBI sing 233 n n 
C12 H12 IBI sing 234 n n 
C12 H12A IBI sing 235 n n 
C15 H15 IBI sing 236 n n 
C18 H18 IBI sing 237 n n 
C21 H21 IBI sing 238 n n 
C31 H31 IBI sing 239 n n 
C31 H31A IBI sing 240 n n 
C32 H32 IBI sing 241 n n 
C32 H32A IBI sing 242 n n 
C32 H32B IBI sing 243 n n 
C33 H33 IBI sing 244 n n 
C34 H34 IBI sing 245 n n 
C34 H34A IBI sing 246 n n 
C34 H34B IBI sing 247 n n 
C35 H35 IBI sing 248 n n 
C35 H35A IBI sing 249 n n 
C35 H35B IBI sing 250 n n 
C36 H36 IBI sing 251 n n 
C36 H36A IBI sing 252 n n 
C36 H36B IBI sing 253 n n 
C38 H38 IBI sing 254 n n 
C38 H38A IBI sing 255 n n 
C38 H38B IBI sing 256 n n 
N19 HN19 IBI sing 257 n n 
C29 H29 IBI sing 258 n n 
C13 H13 IBI sing 259 n n 
N41 HN41 IBI sing 260 n n 
C9 H9 IBI sing 261 n n 
C10 H10 IBI sing 262 n n 
C42 H42 IBI sing 263 n n 
C42 H42A IBI sing 264 n n 
C43 H43 IBI sing 265 n n 
C45 H45 IBI sing 266 n n 
C45 H45A IBI sing 267 n n 
C44 H44 IBI sing 268 n n 
C44 H44A IBI sing 269 n n 
#
_atom_sites.entry_id                     5V67 
_atom_sites.fract_transf_matrix[1][1]    0.026151 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023691 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010702 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IBI A 1 201 1 IBI IBI . 
C 3 EDO A 1 202 1 EDO EDO . 
D 4 DMS A 1 203 1 DMS DMS . 
E 4 DMS A 1 204 2 DMS DMS . 
F 5 HOH A 1 301 29 HOH HOH . 
F 5 HOH A 2 302 72 HOH HOH . 
F 5 HOH A 3 303 15 HOH HOH . 
F 5 HOH A 4 304 113 HOH HOH . 
F 5 HOH A 5 305 97 HOH HOH . 
F 5 HOH A 6 306 31 HOH HOH . 
F 5 HOH A 7 307 61 HOH HOH . 
F 5 HOH A 8 308 87 HOH HOH . 
F 5 HOH A 9 309 99 HOH HOH . 
F 5 HOH A 10 310 42 HOH HOH . 
F 5 HOH A 11 311 43 HOH HOH . 
F 5 HOH A 12 312 26 HOH HOH . 
F 5 HOH A 13 313 2 HOH HOH . 
F 5 HOH A 14 314 36 HOH HOH . 
F 5 HOH A 15 315 17 HOH HOH . 
F 5 HOH A 16 316 54 HOH HOH . 
F 5 HOH A 17 317 1 HOH HOH . 
F 5 HOH A 18 318 73 HOH HOH . 
F 5 HOH A 19 319 68 HOH HOH . 
F 5 HOH A 20 320 7 HOH HOH . 
F 5 HOH A 21 321 34 HOH HOH . 
F 5 HOH A 22 322 49 HOH HOH . 
F 5 HOH A 23 323 71 HOH HOH . 
F 5 HOH A 24 324 27 HOH HOH . 
F 5 HOH A 25 325 112 HOH HOH . 
F 5 HOH A 26 326 18 HOH HOH . 
F 5 HOH A 27 327 3 HOH HOH . 
F 5 HOH A 28 328 57 HOH HOH . 
F 5 HOH A 29 329 8 HOH HOH . 
F 5 HOH A 30 330 23 HOH HOH . 
F 5 HOH A 31 331 5 HOH HOH . 
F 5 HOH A 32 332 22 HOH HOH . 
F 5 HOH A 33 333 79 HOH HOH . 
F 5 HOH A 34 334 38 HOH HOH . 
F 5 HOH A 35 335 98 HOH HOH . 
F 5 HOH A 36 336 14 HOH HOH . 
F 5 HOH A 37 337 39 HOH HOH . 
F 5 HOH A 38 338 74 HOH HOH . 
F 5 HOH A 39 339 63 HOH HOH . 
F 5 HOH A 40 340 25 HOH HOH . 
F 5 HOH A 41 341 52 HOH HOH . 
F 5 HOH A 42 342 84 HOH HOH . 
F 5 HOH A 43 343 47 HOH HOH . 
F 5 HOH A 44 344 94 HOH HOH . 
F 5 HOH A 45 345 91 HOH HOH . 
F 5 HOH A 46 346 12 HOH HOH . 
F 5 HOH A 47 347 58 HOH HOH . 
F 5 HOH A 48 348 30 HOH HOH . 
F 5 HOH A 49 349 86 HOH HOH . 
F 5 HOH A 50 350 116 HOH HOH . 
F 5 HOH A 51 351 10 HOH HOH . 
F 5 HOH A 52 352 83 HOH HOH . 
F 5 HOH A 53 353 101 HOH HOH . 
F 5 HOH A 54 354 67 HOH HOH . 
F 5 HOH A 55 355 46 HOH HOH . 
F 5 HOH A 56 356 37 HOH HOH . 
F 5 HOH A 57 357 28 HOH HOH . 
F 5 HOH A 58 358 96 HOH HOH . 
F 5 HOH A 59 359 62 HOH HOH . 
F 5 HOH A 60 360 53 HOH HOH . 
F 5 HOH A 61 361 75 HOH HOH . 
F 5 HOH A 62 362 21 HOH HOH . 
F 5 HOH A 63 363 107 HOH HOH . 
F 5 HOH A 64 364 6 HOH HOH . 
F 5 HOH A 65 365 89 HOH HOH . 
F 5 HOH A 66 366 78 HOH HOH . 
F 5 HOH A 67 367 20 HOH HOH . 
F 5 HOH A 68 368 13 HOH HOH . 
F 5 HOH A 69 369 95 HOH HOH . 
F 5 HOH A 70 370 11 HOH HOH . 
F 5 HOH A 71 371 93 HOH HOH . 
F 5 HOH A 72 372 19 HOH HOH . 
F 5 HOH A 73 373 66 HOH HOH . 
F 5 HOH A 74 374 60 HOH HOH . 
F 5 HOH A 75 375 33 HOH HOH . 
F 5 HOH A 76 376 24 HOH HOH . 
F 5 HOH A 77 377 104 HOH HOH . 
F 5 HOH A 78 378 51 HOH HOH . 
F 5 HOH A 79 379 4 HOH HOH . 
F 5 HOH A 80 380 45 HOH HOH . 
F 5 HOH A 81 381 64 HOH HOH . 
F 5 HOH A 82 382 40 HOH HOH . 
F 5 HOH A 83 383 56 HOH HOH . 
F 5 HOH A 84 384 102 HOH HOH . 
F 5 HOH A 85 385 111 HOH HOH . 
F 5 HOH A 86 386 80 HOH HOH . 
F 5 HOH A 87 387 59 HOH HOH . 
F 5 HOH A 88 388 48 HOH HOH . 
F 5 HOH A 89 389 70 HOH HOH . 
F 5 HOH A 90 390 115 HOH HOH . 
F 5 HOH A 91 391 88 HOH HOH . 
F 5 HOH A 92 392 117 HOH HOH . 
F 5 HOH A 93 393 77 HOH HOH . 
F 5 HOH A 94 394 82 HOH HOH . 
F 5 HOH A 95 395 32 HOH HOH . 
F 5 HOH A 96 396 44 HOH HOH . 
F 5 HOH A 97 397 16 HOH HOH . 
F 5 HOH A 98 398 50 HOH HOH . 
F 5 HOH A 99 399 9 HOH HOH . 
F 5 HOH A 100 400 108 HOH HOH . 
F 5 HOH A 101 401 35 HOH HOH . 
F 5 HOH A 102 402 55 HOH HOH . 
F 5 HOH A 103 403 110 HOH HOH . 
F 5 HOH A 104 404 100 HOH HOH . 
F 5 HOH A 105 405 114 HOH HOH . 
F 5 HOH A 106 406 105 HOH HOH . 
F 5 HOH A 107 407 85 HOH HOH . 
F 5 HOH A 108 408 81 HOH HOH . 
F 5 HOH A 109 409 103 HOH HOH . 
F 5 HOH A 110 410 65 HOH HOH . 
F 5 HOH A 111 411 76 HOH HOH . 
F 5 HOH A 112 412 41 HOH HOH . 
F 5 HOH A 113 413 92 HOH HOH . 
F 5 HOH A 114 414 69 HOH HOH . 
F 5 HOH A 115 415 90 HOH HOH . 
F 5 HOH A 116 416 106 HOH HOH . 
F 5 HOH A 117 417 109 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IBI . . . B 2 23.521 14.009 12.655 1 41.27 ? C1 IBI 201 A 1 
HETATM 2 C C2 IBI . . . B 2 24.263 13.585 13.938 1 43 ? C2 IBI 201 A 1 
HETATM 3 C C5 IBI . . . B 2 21.989 15.296 14.05 1 40.83 ? C5 IBI 201 A 1 
HETATM 4 C C6 IBI . . . B 2 22.434 14.486 15.235 1 42.59 ? C6 IBI 201 A 1 
HETATM 5 C C7 IBI . . . B 2 19.13 15.587 10.951 1 31.56 ? C7 IBI 201 A 1 
HETATM 6 C C8 IBI . . . B 2 20.25 15.815 11.905 1 32.63 ? C8 IBI 201 A 1 
HETATM 7 C C11 IBI . . . B 2 20.795 14.53 9.336 1 30.8 ? C11 IBI 201 A 1 
HETATM 8 C C12 IBI . . . B 2 21.921 14.784 10.312 1 33.41 ? C12 IBI 201 A 1 
HETATM 9 C C15 IBI . . . B 2 15.904 15.05 7.398 1 20.36 ? C15 IBI 201 A 1 
HETATM 10 C C16 IBI . . . B 2 15.609 16.449 5.056 1 18.73 ? C16 IBI 201 A 1 
HETATM 11 C C17 IBI . . . B 2 16.841 15.984 7.044 1 23.29 ? C17 IBI 201 A 1 
HETATM 12 C C18 IBI . . . B 2 16.661 16.688 5.868 1 20.93 ? C18 IBI 201 A 1 
HETATM 13 C C21 IBI . . . B 2 8.236 13.636 2.743 1 13.4 ? C21 IBI 201 A 1 
HETATM 14 N N22 IBI . . . B 2 8.979 12.522 4.778 1 15.23 ? N22 IBI 201 A 1 
HETATM 15 C C24 IBI . . . B 2 10.155 13.277 4.791 1 15.16 ? C24 IBI 201 A 1 
HETATM 16 C C31 IBI . . . B 2 7.373 14.817 3.053 1 11.49 ? C31 IBI 201 A 1 
HETATM 17 C C32 IBI . . . B 2 7.862 15.514 4.275 1 11.75 ? C32 IBI 201 A 1 
HETATM 18 C C33 IBI . . . B 2 9.641 14.908 1.345 1 15.06 ? C33 IBI 201 A 1 
HETATM 19 C C34 IBI . . . B 2 10.27 16.282 1.436 1 15.33 ? C34 IBI 201 A 1 
HETATM 20 C C35 IBI . . . B 2 9.668 14.176 0.03 1 15.59 ? C35 IBI 201 A 1 
HETATM 21 C C36 IBI . . . B 2 8.838 11.529 5.788 1 16.07 ? C36 IBI 201 A 1 
HETATM 22 C C38 IBI . . . B 2 16.264 18.066 3.411 1 22.97 ? C38 IBI 201 A 1 
HETATM 23 C C39 IBI . . . B 2 18.039 16.268 7.896 1 26.96 ? C39 IBI 201 A 1 
HETATM 24 O O40 IBI . . . B 2 18.554 17.379 7.838 1 24.25 ? O40 IBI 201 A 1 
HETATM 25 O O37 IBI . . . B 2 15.408 17.081 3.891 1 22.69 ? O37 IBI 201 A 1 
HETATM 26 C C14 IBI . . . B 2 14.592 15.479 5.436 1 18.97 ? C14 IBI 201 A 1 
HETATM 27 N N19 IBI . . . B 2 13.602 15.345 4.564 1 17.54 ? N19 IBI 201 A 1 
HETATM 28 C C26 IBI . . . B 2 12.479 14.674 4.64 1 16.6 ? C26 IBI 201 A 1 
HETATM 29 N N27 IBI . . . B 2 11.655 14.681 3.569 1 15.74 ? N27 IBI 201 A 1 
HETATM 30 C C25 IBI . . . B 2 10.504 14.065 3.577 1 15.1 ? C25 IBI 201 A 1 
HETATM 31 N N23 IBI . . . B 2 9.632 13.987 2.49 1 14.24 ? N23 IBI 201 A 1 
HETATM 32 N N28 IBI . . . B 2 12.168 14.027 5.749 1 15.74 ? N28 IBI 201 A 1 
HETATM 33 C C29 IBI . . . B 2 11.062 13.346 5.835 1 16.37 ? C29 IBI 201 A 1 
HETATM 34 C C20 IBI . . . B 2 8.045 12.62 3.847 1 14 ? C20 IBI 201 A 1 
HETATM 35 O O30 IBI . . . B 2 7.047 12.03 3.825 1 14.7 ? O30 IBI 201 A 1 
HETATM 36 C C13 IBI . . . B 2 14.803 14.797 6.617 1 19.17 ? C13 IBI 201 A 1 
HETATM 37 N N41 IBI . . . B 2 18.511 15.278 8.66 1 28.17 ? N41 IBI 201 A 1 
HETATM 38 C C9 IBI . . . B 2 19.646 15.515 9.508 1 30.7 ? C9 IBI 201 A 1 
HETATM 39 C C10 IBI . . . B 2 21.275 14.704 11.718 1 35.8 ? C10 IBI 201 A 1 
HETATM 40 N N3 IBI . . . B 2 22.146 14.422 12.897 1 40.44 ? N3 IBI 201 A 1 
HETATM 41 N N4 IBI . . . B 2 23.857 14.373 15.104 1 43.43 ? N4 IBI 201 A 1 
HETATM 42 C C42 IBI . . . B 2 24.45 14.061 16.427 1 43.63 ? C42 IBI 201 A 1 
HETATM 43 C C43 IBI . . . B 2 25.341 12.856 16.474 1 42.79 ? C43 IBI 201 A 1 
HETATM 44 C C45 IBI . . . B 2 26.747 13.243 16.154 1 42.51 ? C45 IBI 201 A 1 
HETATM 45 C C44 IBI . . . B 2 26.346 13.006 17.594 1 42.74 ? C44 IBI 201 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           45 
#