data_5V67 # _model_server_result.job_id M1ufl4V4wbDdCzq4_OxRiQ _model_server_result.datetime_utc '2024-11-27 22:18:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v67 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 5V67 # _exptl.entry_id 5V67 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5V67 _cell.length_a 38.24 _cell.length_b 42.21 _cell.length_c 93.44 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V67 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5V67 _atom_sites.fract_transf_matrix[1][1] 0.026151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023691 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IBI A 1 201 1 IBI IBI . C 3 EDO A 1 202 1 EDO EDO . D 4 DMS A 1 203 1 DMS DMS . E 4 DMS A 1 204 2 DMS DMS . F 5 HOH A 1 301 29 HOH HOH . F 5 HOH A 2 302 72 HOH HOH . F 5 HOH A 3 303 15 HOH HOH . F 5 HOH A 4 304 113 HOH HOH . F 5 HOH A 5 305 97 HOH HOH . F 5 HOH A 6 306 31 HOH HOH . F 5 HOH A 7 307 61 HOH HOH . F 5 HOH A 8 308 87 HOH HOH . F 5 HOH A 9 309 99 HOH HOH . F 5 HOH A 10 310 42 HOH HOH . F 5 HOH A 11 311 43 HOH HOH . F 5 HOH A 12 312 26 HOH HOH . F 5 HOH A 13 313 2 HOH HOH . F 5 HOH A 14 314 36 HOH HOH . F 5 HOH A 15 315 17 HOH HOH . F 5 HOH A 16 316 54 HOH HOH . F 5 HOH A 17 317 1 HOH HOH . F 5 HOH A 18 318 73 HOH HOH . F 5 HOH A 19 319 68 HOH HOH . F 5 HOH A 20 320 7 HOH HOH . F 5 HOH A 21 321 34 HOH HOH . F 5 HOH A 22 322 49 HOH HOH . F 5 HOH A 23 323 71 HOH HOH . F 5 HOH A 24 324 27 HOH HOH . F 5 HOH A 25 325 112 HOH HOH . F 5 HOH A 26 326 18 HOH HOH . F 5 HOH A 27 327 3 HOH HOH . F 5 HOH A 28 328 57 HOH HOH . F 5 HOH A 29 329 8 HOH HOH . F 5 HOH A 30 330 23 HOH HOH . F 5 HOH A 31 331 5 HOH HOH . F 5 HOH A 32 332 22 HOH HOH . F 5 HOH A 33 333 79 HOH HOH . F 5 HOH A 34 334 38 HOH HOH . F 5 HOH A 35 335 98 HOH HOH . F 5 HOH A 36 336 14 HOH HOH . F 5 HOH A 37 337 39 HOH HOH . F 5 HOH A 38 338 74 HOH HOH . F 5 HOH A 39 339 63 HOH HOH . F 5 HOH A 40 340 25 HOH HOH . F 5 HOH A 41 341 52 HOH HOH . F 5 HOH A 42 342 84 HOH HOH . F 5 HOH A 43 343 47 HOH HOH . F 5 HOH A 44 344 94 HOH HOH . F 5 HOH A 45 345 91 HOH HOH . F 5 HOH A 46 346 12 HOH HOH . F 5 HOH A 47 347 58 HOH HOH . F 5 HOH A 48 348 30 HOH HOH . F 5 HOH A 49 349 86 HOH HOH . F 5 HOH A 50 350 116 HOH HOH . F 5 HOH A 51 351 10 HOH HOH . F 5 HOH A 52 352 83 HOH HOH . F 5 HOH A 53 353 101 HOH HOH . F 5 HOH A 54 354 67 HOH HOH . F 5 HOH A 55 355 46 HOH HOH . F 5 HOH A 56 356 37 HOH HOH . F 5 HOH A 57 357 28 HOH HOH . F 5 HOH A 58 358 96 HOH HOH . F 5 HOH A 59 359 62 HOH HOH . F 5 HOH A 60 360 53 HOH HOH . F 5 HOH A 61 361 75 HOH HOH . F 5 HOH A 62 362 21 HOH HOH . F 5 HOH A 63 363 107 HOH HOH . F 5 HOH A 64 364 6 HOH HOH . F 5 HOH A 65 365 89 HOH HOH . F 5 HOH A 66 366 78 HOH HOH . F 5 HOH A 67 367 20 HOH HOH . F 5 HOH A 68 368 13 HOH HOH . F 5 HOH A 69 369 95 HOH HOH . F 5 HOH A 70 370 11 HOH HOH . F 5 HOH A 71 371 93 HOH HOH . F 5 HOH A 72 372 19 HOH HOH . F 5 HOH A 73 373 66 HOH HOH . F 5 HOH A 74 374 60 HOH HOH . F 5 HOH A 75 375 33 HOH HOH . F 5 HOH A 76 376 24 HOH HOH . F 5 HOH A 77 377 104 HOH HOH . F 5 HOH A 78 378 51 HOH HOH . F 5 HOH A 79 379 4 HOH HOH . F 5 HOH A 80 380 45 HOH HOH . F 5 HOH A 81 381 64 HOH HOH . F 5 HOH A 82 382 40 HOH HOH . F 5 HOH A 83 383 56 HOH HOH . F 5 HOH A 84 384 102 HOH HOH . F 5 HOH A 85 385 111 HOH HOH . F 5 HOH A 86 386 80 HOH HOH . F 5 HOH A 87 387 59 HOH HOH . F 5 HOH A 88 388 48 HOH HOH . F 5 HOH A 89 389 70 HOH HOH . F 5 HOH A 90 390 115 HOH HOH . F 5 HOH A 91 391 88 HOH HOH . F 5 HOH A 92 392 117 HOH HOH . F 5 HOH A 93 393 77 HOH HOH . F 5 HOH A 94 394 82 HOH HOH . F 5 HOH A 95 395 32 HOH HOH . F 5 HOH A 96 396 44 HOH HOH . F 5 HOH A 97 397 16 HOH HOH . F 5 HOH A 98 398 50 HOH HOH . F 5 HOH A 99 399 9 HOH HOH . F 5 HOH A 100 400 108 HOH HOH . F 5 HOH A 101 401 35 HOH HOH . F 5 HOH A 102 402 55 HOH HOH . F 5 HOH A 103 403 110 HOH HOH . F 5 HOH A 104 404 100 HOH HOH . F 5 HOH A 105 405 114 HOH HOH . F 5 HOH A 106 406 105 HOH HOH . F 5 HOH A 107 407 85 HOH HOH . F 5 HOH A 108 408 81 HOH HOH . F 5 HOH A 109 409 103 HOH HOH . F 5 HOH A 110 410 65 HOH HOH . F 5 HOH A 111 411 76 HOH HOH . F 5 HOH A 112 412 41 HOH HOH . F 5 HOH A 113 413 92 HOH HOH . F 5 HOH A 114 414 69 HOH HOH . F 5 HOH A 115 415 90 HOH HOH . F 5 HOH A 116 416 106 HOH HOH . F 5 HOH A 117 417 109 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . D 4 -4.945 23.027 9.35 1 53.92 ? S DMS 203 A 1 HETATM 2 O O DMS . . . D 4 -3.882 23.371 10.331 1 50.87 ? O DMS 203 A 1 HETATM 3 C C1 DMS . . . D 4 -6.521 22.575 10.13 1 54.95 ? C1 DMS 203 A 1 HETATM 4 C C2 DMS . . . D 4 -5.434 24.475 8.368 1 53.72 ? C2 DMS 203 A 1 HETATM 5 H H11 DMS . . . D 4 -6.398 21.681 10.683 1 65.93 ? H11 DMS 203 A 1 HETATM 6 H H12 DMS . . . D 4 -7.256 22.428 9.381 1 65.93 ? H12 DMS 203 A 1 HETATM 7 H H13 DMS . . . D 4 -6.83 23.352 10.779 1 65.93 ? H13 DMS 203 A 1 HETATM 8 H H21 DMS . . . D 4 -6.25 24.218 7.743 1 64.46 ? H21 DMS 203 A 1 HETATM 9 H H22 DMS . . . D 4 -4.618 24.789 7.771 1 64.46 ? H22 DMS 203 A 1 HETATM 10 H H23 DMS . . . D 4 -5.72 25.262 9.016 1 64.46 ? H23 DMS 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #