data_5V6I
#
_model_server_result.job_id            ztdmFao2oCA8uEprM7poCA 
_model_server_result.datetime_utc      '2024-11-27 13:36:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v6i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":202}' 
#
_entry.id    5V6I 
#
_exptl.entry_id    5V6I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              195.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PLATINUM (II) ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          99.52 
_cell.angle_gamma         90 
_cell.entry_id            5V6I 
_cell.length_a            41.102 
_cell.length_b            55.237 
_cell.length_c            41.879 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V6I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 24 1_555 A SG CYS 83 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
disulf ? disulf2 A SG CYS 18 A CYS 36 1_555 A SG CYS 51 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf3 A SG CYS 26 A CYS 44 1_555 A SG CYS 72 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
disulf ? disulf4 A SG CYS 43 A CYS 61 1_555 A SG CYS 108 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf5 B SG CYS 6 B CYS 24 1_555 B SG CYS 83 B CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? 
disulf ? disulf6 B SG CYS 18 B CYS 36 1_555 B SG CYS 51 B CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf7 B SG CYS 26 B CYS 44 1_555 B SG CYS 72 B CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? 
disulf ? disulf8 B SG CYS 43 B CYS 61 1_555 B SG CYS 108 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? 
covale ? covale1 A C PCA 1 A PCA 19 1_555 A N ASP 2 A ASP 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale2 B C PCA 1 B PCA 19 1_555 B N ASP 2 B ASP 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
metalc ? metalc1 B SG CYS 6 B CYS 24 1_555 E PT PT . B PT 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc2 B SG CYS 6 B CYS 24 1_555 E PT PT . B PT 202 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.476 ? 
#
_chem_comp.formula           'Pt 2' 
_chem_comp.formula_weight    195.078 
_chem_comp.id                PT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PLATINUM (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5V6I 
_atom_sites.fract_transf_matrix[1][1]    0.02433 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004079 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024212 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NHE A 1 201 201 NHE NHE . 
D 3 PT B 1 201 201 PT PT . 
E 3 PT B 1 202 202 PT PT . 
F 3 PT B 1 203 203 PT PT . 
G 3 PT B 1 204 204 PT PT . 
H 4 CL B 1 205 205 CL CL . 
I 4 CL B 1 206 206 CL CL . 
J 4 CL B 1 207 207 CL CL . 
K 4 CL B 1 208 208 CL CL . 
L 4 CL B 1 209 209 CL CL . 
M 4 CL B 1 210 210 CL CL . 
N 4 CL B 1 211 211 CL CL . 
O 4 CL B 1 212 212 CL CL . 
P 4 CL B 1 213 213 CL CL . 
Q 4 CL B 1 214 214 CL CL . 
R 4 CL B 1 215 215 CL CL . 
S 4 CL B 1 216 216 CL CL . 
T 2 NHE B 1 217 217 NHE NHE . 
U 5 HOH A 1 301 301 HOH HOH . 
U 5 HOH A 2 302 302 HOH HOH . 
U 5 HOH A 3 303 303 HOH HOH . 
U 5 HOH A 4 304 304 HOH HOH . 
U 5 HOH A 5 305 305 HOH HOH . 
U 5 HOH A 6 306 306 HOH HOH . 
U 5 HOH A 7 307 307 HOH HOH . 
U 5 HOH A 8 308 308 HOH HOH . 
U 5 HOH A 9 309 309 HOH HOH . 
U 5 HOH A 10 310 310 HOH HOH . 
U 5 HOH A 11 311 311 HOH HOH . 
U 5 HOH A 12 312 312 HOH HOH . 
U 5 HOH A 13 313 313 HOH HOH . 
U 5 HOH A 14 314 314 HOH HOH . 
U 5 HOH A 15 315 315 HOH HOH . 
U 5 HOH A 16 316 316 HOH HOH . 
U 5 HOH A 17 317 317 HOH HOH . 
U 5 HOH A 18 318 318 HOH HOH . 
U 5 HOH A 19 319 319 HOH HOH . 
U 5 HOH A 20 320 320 HOH HOH . 
U 5 HOH A 21 321 321 HOH HOH . 
U 5 HOH A 22 322 322 HOH HOH . 
U 5 HOH A 23 323 323 HOH HOH . 
U 5 HOH A 24 324 324 HOH HOH . 
U 5 HOH A 25 325 325 HOH HOH . 
U 5 HOH A 26 326 326 HOH HOH . 
U 5 HOH A 27 327 327 HOH HOH . 
U 5 HOH A 28 328 328 HOH HOH . 
U 5 HOH A 29 329 329 HOH HOH . 
U 5 HOH A 30 330 330 HOH HOH . 
U 5 HOH A 31 331 331 HOH HOH . 
U 5 HOH A 32 332 332 HOH HOH . 
U 5 HOH A 33 333 333 HOH HOH . 
U 5 HOH A 34 334 334 HOH HOH . 
U 5 HOH A 35 335 335 HOH HOH . 
U 5 HOH A 36 336 336 HOH HOH . 
U 5 HOH A 37 337 337 HOH HOH . 
U 5 HOH A 38 338 338 HOH HOH . 
U 5 HOH A 39 339 339 HOH HOH . 
U 5 HOH A 40 340 340 HOH HOH . 
U 5 HOH A 41 341 341 HOH HOH . 
U 5 HOH A 42 342 342 HOH HOH . 
U 5 HOH A 43 343 343 HOH HOH . 
U 5 HOH A 44 344 344 HOH HOH . 
U 5 HOH A 45 345 345 HOH HOH . 
U 5 HOH A 46 346 346 HOH HOH . 
U 5 HOH A 47 347 347 HOH HOH . 
U 5 HOH A 48 348 348 HOH HOH . 
U 5 HOH A 49 349 349 HOH HOH . 
U 5 HOH A 50 350 350 HOH HOH . 
U 5 HOH A 51 351 351 HOH HOH . 
U 5 HOH A 52 352 352 HOH HOH . 
U 5 HOH A 53 353 353 HOH HOH . 
U 5 HOH A 54 354 354 HOH HOH . 
U 5 HOH A 55 355 355 HOH HOH . 
U 5 HOH A 56 356 356 HOH HOH . 
U 5 HOH A 57 357 357 HOH HOH . 
U 5 HOH A 58 358 358 HOH HOH . 
U 5 HOH A 59 359 359 HOH HOH . 
U 5 HOH A 60 360 360 HOH HOH . 
U 5 HOH A 61 361 361 HOH HOH . 
U 5 HOH A 62 362 362 HOH HOH . 
U 5 HOH A 63 363 363 HOH HOH . 
U 5 HOH A 64 364 364 HOH HOH . 
U 5 HOH A 65 365 365 HOH HOH . 
U 5 HOH A 66 366 366 HOH HOH . 
U 5 HOH A 67 367 367 HOH HOH . 
U 5 HOH A 68 368 368 HOH HOH . 
U 5 HOH A 69 369 369 HOH HOH . 
U 5 HOH A 70 370 370 HOH HOH . 
U 5 HOH A 71 371 371 HOH HOH . 
U 5 HOH A 72 372 372 HOH HOH . 
U 5 HOH A 73 373 373 HOH HOH . 
U 5 HOH A 74 374 374 HOH HOH . 
U 5 HOH A 75 375 375 HOH HOH . 
U 5 HOH A 76 376 376 HOH HOH . 
U 5 HOH A 77 377 377 HOH HOH . 
U 5 HOH A 78 378 378 HOH HOH . 
U 5 HOH A 79 379 379 HOH HOH . 
U 5 HOH A 80 380 380 HOH HOH . 
U 5 HOH A 81 381 381 HOH HOH . 
U 5 HOH A 82 382 382 HOH HOH . 
U 5 HOH A 83 383 383 HOH HOH . 
U 5 HOH A 84 384 384 HOH HOH . 
U 5 HOH A 85 385 385 HOH HOH . 
U 5 HOH A 86 386 386 HOH HOH . 
V 5 HOH B 1 301 301 HOH HOH . 
V 5 HOH B 2 302 302 HOH HOH . 
V 5 HOH B 3 303 303 HOH HOH . 
V 5 HOH B 4 304 304 HOH HOH . 
V 5 HOH B 5 305 305 HOH HOH . 
V 5 HOH B 6 306 306 HOH HOH . 
V 5 HOH B 7 307 307 HOH HOH . 
V 5 HOH B 8 308 308 HOH HOH . 
V 5 HOH B 9 309 309 HOH HOH . 
V 5 HOH B 10 310 310 HOH HOH . 
V 5 HOH B 11 311 311 HOH HOH . 
V 5 HOH B 12 312 312 HOH HOH . 
V 5 HOH B 13 313 313 HOH HOH . 
V 5 HOH B 14 314 314 HOH HOH . 
V 5 HOH B 15 315 315 HOH HOH . 
V 5 HOH B 16 316 316 HOH HOH . 
V 5 HOH B 17 317 317 HOH HOH . 
V 5 HOH B 18 318 318 HOH HOH . 
V 5 HOH B 19 319 319 HOH HOH . 
V 5 HOH B 20 320 320 HOH HOH . 
V 5 HOH B 21 321 321 HOH HOH . 
V 5 HOH B 22 322 322 HOH HOH . 
V 5 HOH B 23 323 323 HOH HOH . 
V 5 HOH B 24 324 324 HOH HOH . 
V 5 HOH B 25 325 325 HOH HOH . 
V 5 HOH B 26 326 326 HOH HOH . 
V 5 HOH B 27 327 327 HOH HOH . 
V 5 HOH B 28 328 328 HOH HOH . 
V 5 HOH B 29 329 329 HOH HOH . 
V 5 HOH B 30 330 330 HOH HOH . 
V 5 HOH B 31 331 331 HOH HOH . 
V 5 HOH B 32 332 332 HOH HOH . 
V 5 HOH B 33 333 333 HOH HOH . 
V 5 HOH B 34 334 334 HOH HOH . 
V 5 HOH B 35 335 335 HOH HOH . 
V 5 HOH B 36 336 336 HOH HOH . 
V 5 HOH B 37 337 337 HOH HOH . 
V 5 HOH B 38 338 338 HOH HOH . 
V 5 HOH B 39 339 339 HOH HOH . 
V 5 HOH B 40 340 340 HOH HOH . 
V 5 HOH B 41 341 341 HOH HOH . 
V 5 HOH B 42 342 342 HOH HOH . 
V 5 HOH B 43 343 343 HOH HOH . 
V 5 HOH B 44 344 344 HOH HOH . 
V 5 HOH B 45 345 345 HOH HOH . 
V 5 HOH B 46 346 346 HOH HOH . 
V 5 HOH B 47 347 347 HOH HOH . 
V 5 HOH B 48 348 348 HOH HOH . 
V 5 HOH B 49 349 349 HOH HOH . 
V 5 HOH B 50 350 350 HOH HOH . 
V 5 HOH B 51 351 351 HOH HOH . 
V 5 HOH B 52 352 352 HOH HOH . 
V 5 HOH B 53 353 353 HOH HOH . 
V 5 HOH B 54 354 354 HOH HOH . 
V 5 HOH B 55 355 355 HOH HOH . 
V 5 HOH B 56 356 356 HOH HOH . 
V 5 HOH B 57 357 357 HOH HOH . 
V 5 HOH B 58 358 358 HOH HOH . 
V 5 HOH B 59 359 359 HOH HOH . 
V 5 HOH B 60 360 360 HOH HOH . 
V 5 HOH B 61 361 361 HOH HOH . 
V 5 HOH B 62 362 362 HOH HOH . 
V 5 HOH B 63 363 363 HOH HOH . 
V 5 HOH B 64 364 364 HOH HOH . 
V 5 HOH B 65 365 365 HOH HOH . 
V 5 HOH B 66 366 366 HOH HOH . 
V 5 HOH B 67 367 367 HOH HOH . 
V 5 HOH B 68 368 368 HOH HOH . 
V 5 HOH B 69 369 369 HOH HOH . 
V 5 HOH B 70 370 370 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 PT PT PT . A . E 3 10.5 7.706 -0.265 0.25 51.42 ? PT PT 202 B 1 
HETATM 2 PT PT PT . B . E 3 10.877 8.627 -1.512 0.25 43.8 ? PT PT 202 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           2 
#