data_5V6O # _model_server_result.job_id QPaCncVWXPpXcmV_ljmNwA _model_server_result.datetime_utc '2025-01-22 15:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 5V6O # _exptl.entry_id 5V6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.77 _cell.angle_gamma 90 _cell.entry_id 5V6O _cell.length_a 178.388 _cell.length_b 133.338 _cell.length_c 160.312 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 K N N ? 2 O N N ? 2 P N N ? 2 U N N ? 2 Y N N # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 192 n n C1B O1B LMT sing 193 n n C1B O5B LMT sing 194 n n C1B H1B LMT sing 195 n n C2B C3B LMT sing 196 n n C2B O2B LMT sing 197 n n C2B H2B LMT sing 198 n n C3B C4B LMT sing 199 n n C3B O3B LMT sing 200 n n C3B H3B LMT sing 201 n n C4B C5B LMT sing 202 n n C4B O4' LMT sing 203 n n C4B H4B LMT sing 204 n n C5B C6B LMT sing 205 n n C5B O5B LMT sing 206 n n C5B H5B LMT sing 207 n n C6B O6B LMT sing 208 n n C6B "H6'2" LMT sing 209 n n C6B "H6'1" LMT sing 210 n n O1B C4' LMT sing 211 n n O2B H2O1 LMT sing 212 n n O3B H3O1 LMT sing 213 n n O4' H4O1 LMT sing 214 n n O6B H6B LMT sing 215 n n C1' C2' LMT sing 216 n n C1' O1' LMT sing 217 n n C1' O5' LMT sing 218 n n C1' H1' LMT sing 219 n n C2' C3' LMT sing 220 n n C2' O2' LMT sing 221 n n C2' H2' LMT sing 222 n n C3' C4' LMT sing 223 n n C3' O3' LMT sing 224 n n C3' H3' LMT sing 225 n n C4' C5' LMT sing 226 n n C4' H4' LMT sing 227 n n C5' C6' LMT sing 228 n n C5' O5' LMT sing 229 n n C5' H5' LMT sing 230 n n C6' O6' LMT sing 231 n n C6' H6D LMT sing 232 n n C6' H6E LMT sing 233 n n O1' C1 LMT sing 234 n n O2' H2O2 LMT sing 235 n n O3' H3O2 LMT sing 236 n n O6' H6' LMT sing 237 n n C1 C2 LMT sing 238 n n C1 H12 LMT sing 239 n n C1 H11 LMT sing 240 n n C2 C3 LMT sing 241 n n C2 H22 LMT sing 242 n n C2 H21 LMT sing 243 n n C3 C4 LMT sing 244 n n C3 H32 LMT sing 245 n n C3 H31 LMT sing 246 n n C4 C5 LMT sing 247 n n C4 H42 LMT sing 248 n n C4 H41 LMT sing 249 n n C5 C6 LMT sing 250 n n C5 H52 LMT sing 251 n n C5 H51 LMT sing 252 n n C6 C7 LMT sing 253 n n C6 H62 LMT sing 254 n n C6 H61 LMT sing 255 n n C7 C8 LMT sing 256 n n C7 H72 LMT sing 257 n n C7 H71 LMT sing 258 n n C8 C9 LMT sing 259 n n C8 H82 LMT sing 260 n n C8 H81 LMT sing 261 n n C9 C10 LMT sing 262 n n C9 H92 LMT sing 263 n n C9 H91 LMT sing 264 n n C10 C11 LMT sing 265 n n C10 H102 LMT sing 266 n n C10 H101 LMT sing 267 n n C11 C12 LMT sing 268 n n C11 H112 LMT sing 269 n n C11 H111 LMT sing 270 n n C12 H123 LMT sing 271 n n C12 H122 LMT sing 272 n n C12 H121 LMT sing 273 n n # _atom_sites.entry_id 5V6O _atom_sites.fract_transf_matrix[1][1] 0.005606 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001168 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 401 318 LMT LMT . G 3 CL A 1 402 319 CL CL . H 4 NA A 1 403 323 NA NA . I 5 SO4 A 1 404 320 SO4 SO4 . J 5 SO4 B 1 401 320 SO4 SO4 . K 2 LMT B 1 402 318 LMT LMT . L 3 CL B 1 403 319 CL CL . M 5 SO4 B 1 404 321 SO4 SO4 . N 5 SO4 B 1 405 321 SO4 SO4 . O 2 LMT D 1 401 322 LMT LMT . P 2 LMT D 1 402 318 LMT LMT . Q 3 CL D 1 403 319 CL CL . R 5 SO4 D 1 404 321 SO4 SO4 . S 5 SO4 E 1 401 321 SO4 SO4 . T 5 SO4 E 1 402 320 SO4 SO4 . U 2 LMT E 1 403 318 LMT LMT . V 3 CL E 1 404 319 CL CL . W 5 SO4 C 1 401 320 SO4 SO4 . X 5 SO4 C 1 402 321 SO4 SO4 . Y 2 LMT C 1 403 318 LMT LMT . Z 3 CL C 1 404 319 CL CL . AA 5 SO4 C 1 405 320 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMT . . . O 2 -18.677 -1.282 184.655 1 91.12 ? C1 LMT 401 D 1 HETATM 2 C C2 LMT . . . O 2 -18.031 -2.167 185.71 1 91.62 ? C2 LMT 401 D 1 HETATM 3 C C3 LMT . . . O 2 -17.425 -1.33 186.821 1 75.21 ? C3 LMT 401 D 1 HETATM 4 C C4 LMT . . . O 2 -16.717 -2.229 187.817 1 77.11 ? C4 LMT 401 D 1 HETATM 5 C C5 LMT . . . O 2 -16.572 -1.511 189.155 1 78.44 ? C5 LMT 401 D 1 HETATM 6 C C6 LMT . . . O 2 -15.52 -2.173 190.03 1 70.35 ? C6 LMT 401 D 1 HETATM 7 C C7 LMT . . . O 2 -15.235 -1.347 191.273 1 71.48 ? C7 LMT 401 D 1 HETATM 8 C C8 LMT . . . O 2 -14.541 -2.23 192.301 1 78.32 ? C8 LMT 401 D 1 HETATM 9 C C9 LMT . . . O 2 -13.917 -1.472 193.466 1 70.19 ? C9 LMT 401 D 1 HETATM 10 C C10 LMT . . . O 2 -13.215 -2.464 194.375 1 60.69 ? C10 LMT 401 D 1 HETATM 11 C C11 LMT . . . O 2 -13.452 -2.048 195.805 1 69.75 ? C11 LMT 401 D 1 HETATM 12 C C12 LMT . . . O 2 -12.274 -1.221 196.274 1 83.69 ? C12 LMT 401 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 668 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #