data_5V6U # _model_server_result.job_id e1lBa2fbxVJ3gPMaZ3kz9w _model_server_result.datetime_utc '2024-12-27 01:16:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v6u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5V6U # _exptl.entry_id 5V6U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 272.319 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(2-acetylphenyl)sulfanyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5V6U _cell.length_a 88.393 _cell.length_b 88.393 _cell.length_c 185.358 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V6U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 100 A CYS 100 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 B SG CYS 100 B CYS 100 1_555 B SG CYS 246 B CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? # _chem_comp.formula 'C15 H12 O3 S' _chem_comp.formula_weight 272.319 _chem_comp.id 8YM _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(2-acetylphenyl)sulfanyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 8YM sing 1 n n C1 O 8YM doub 2 n n C1 C2 8YM sing 3 n n C2 C3 8YM doub 4 n y C2 C7 8YM sing 5 n y C3 C4 8YM sing 6 n y S C7 8YM sing 7 n n S C8 8YM sing 8 n n C7 C6 8YM doub 9 n y C4 C5 8YM doub 10 n y C6 C5 8YM sing 11 n y C9 C8 8YM doub 12 n y C9 C10 8YM sing 13 n y C8 C13 8YM sing 14 n y O2 C14 8YM doub 15 n n C10 C11 8YM doub 16 n y C13 C14 8YM sing 17 n n C13 C12 8YM doub 18 n y C14 O1 8YM sing 19 n n C11 C12 8YM sing 20 n y C5 H1 8YM sing 21 n n C4 H2 8YM sing 22 n n C6 H3 8YM sing 23 n n C H4 8YM sing 24 n n C H5 8YM sing 25 n n C H6 8YM sing 26 n n C10 H7 8YM sing 27 n n C11 H8 8YM sing 28 n n C12 H9 8YM sing 29 n n C3 H10 8YM sing 30 n n C9 H11 8YM sing 31 n n O1 H12 8YM sing 32 n n # _atom_sites.entry_id 5V6U _atom_sites.fract_transf_matrix[1][1] 0.011313 _atom_sites.fract_transf_matrix[1][2] 0.006532 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005395 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8YM B 1 401 1 8YM 8YM . D 3 HOH A 1 401 59 HOH HOH . D 3 HOH A 2 402 61 HOH HOH . D 3 HOH A 3 403 49 HOH HOH . D 3 HOH A 4 404 45 HOH HOH . D 3 HOH A 5 405 64 HOH HOH . D 3 HOH A 6 406 92 HOH HOH . D 3 HOH A 7 407 39 HOH HOH . D 3 HOH A 8 408 36 HOH HOH . D 3 HOH A 9 409 88 HOH HOH . D 3 HOH A 10 410 21 HOH HOH . D 3 HOH A 11 411 60 HOH HOH . D 3 HOH A 12 412 26 HOH HOH . D 3 HOH A 13 413 34 HOH HOH . D 3 HOH A 14 414 50 HOH HOH . D 3 HOH A 15 415 19 HOH HOH . D 3 HOH A 16 416 48 HOH HOH . D 3 HOH A 17 417 62 HOH HOH . D 3 HOH A 18 418 63 HOH HOH . D 3 HOH A 19 419 89 HOH HOH . D 3 HOH A 20 420 2 HOH HOH . D 3 HOH A 21 421 11 HOH HOH . D 3 HOH A 22 422 58 HOH HOH . D 3 HOH A 23 423 13 HOH HOH . D 3 HOH A 24 424 32 HOH HOH . D 3 HOH A 25 425 38 HOH HOH . D 3 HOH A 26 426 57 HOH HOH . D 3 HOH A 27 427 56 HOH HOH . D 3 HOH A 28 428 37 HOH HOH . D 3 HOH A 29 429 91 HOH HOH . E 3 HOH B 1 501 47 HOH HOH . E 3 HOH B 2 502 66 HOH HOH . E 3 HOH B 3 503 6 HOH HOH . E 3 HOH B 4 504 15 HOH HOH . E 3 HOH B 5 505 7 HOH HOH . E 3 HOH B 6 506 40 HOH HOH . E 3 HOH B 7 507 10 HOH HOH . E 3 HOH B 8 508 41 HOH HOH . E 3 HOH B 9 509 67 HOH HOH . E 3 HOH B 10 510 72 HOH HOH . E 3 HOH B 11 511 25 HOH HOH . E 3 HOH B 12 512 69 HOH HOH . E 3 HOH B 13 513 71 HOH HOH . E 3 HOH B 14 514 68 HOH HOH . E 3 HOH B 15 515 24 HOH HOH . E 3 HOH B 16 516 35 HOH HOH . E 3 HOH B 17 517 80 HOH HOH . E 3 HOH B 18 518 51 HOH HOH . E 3 HOH B 19 519 33 HOH HOH . E 3 HOH B 20 520 86 HOH HOH . E 3 HOH B 21 521 12 HOH HOH . E 3 HOH B 22 522 73 HOH HOH . E 3 HOH B 23 523 53 HOH HOH . E 3 HOH B 24 524 5 HOH HOH . E 3 HOH B 25 525 14 HOH HOH . E 3 HOH B 26 526 79 HOH HOH . E 3 HOH B 27 527 81 HOH HOH . E 3 HOH B 28 528 84 HOH HOH . E 3 HOH B 29 529 8 HOH HOH . E 3 HOH B 30 530 4 HOH HOH . E 3 HOH B 31 531 74 HOH HOH . E 3 HOH B 32 532 20 HOH HOH . E 3 HOH B 33 533 77 HOH HOH . E 3 HOH B 34 534 31 HOH HOH . E 3 HOH B 35 535 87 HOH HOH . E 3 HOH B 36 536 78 HOH HOH . E 3 HOH B 37 537 90 HOH HOH . E 3 HOH B 38 538 75 HOH HOH . E 3 HOH B 39 539 46 HOH HOH . E 3 HOH B 40 540 30 HOH HOH . E 3 HOH B 41 541 85 HOH HOH . E 3 HOH B 42 542 16 HOH HOH . E 3 HOH B 43 543 29 HOH HOH . E 3 HOH B 44 544 52 HOH HOH . E 3 HOH B 45 545 9 HOH HOH . E 3 HOH B 46 546 70 HOH HOH . E 3 HOH B 47 547 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 8YM . . . C 2 -40.023 9.757 11.059 0.71 64.55 ? C5 8YM 401 B 1 HETATM 2 C C4 8YM . . . C 2 -38.936 10.371 10.464 0.71 65.76 ? C4 8YM 401 B 1 HETATM 3 C C2 8YM . . . C 2 -40.376 11.974 9.378 0.71 72.75 ? C2 8YM 401 B 1 HETATM 4 C C6 8YM . . . C 2 -41.293 10.235 10.802 0.71 67.7 ? C6 8YM 401 B 1 HETATM 5 C C 8YM . . . C 2 -41.334 13.012 7.206 0.71 81.76 ? C 8YM 401 B 1 HETATM 6 O O 8YM . . . C 2 -39.768 14.111 8.637 0.71 69.79 ? O 8YM 401 B 1 HETATM 7 C C1 8YM . . . C 2 -40.487 13.13 8.459 0.71 80.14 ? C1 8YM 401 B 1 HETATM 8 C C10 8YM . . . C 2 -42.562 15.061 12.131 0.71 68.5 ? C10 8YM 401 B 1 HETATM 9 C C11 8YM . . . C 2 -43.351 14.786 13.234 0.71 63.46 ? C11 8YM 401 B 1 HETATM 10 C C12 8YM . . . C 2 -44.101 13.624 13.277 0.71 63.22 ? C12 8YM 401 B 1 HETATM 11 C C13 8YM . . . C 2 -44.058 12.717 12.232 0.71 69.12 ? C13 8YM 401 B 1 HETATM 12 C C14 8YM . . . C 2 -44.936 11.513 12.334 0.71 70.06 ? C14 8YM 401 B 1 HETATM 13 C C3 8YM . . . C 2 -39.103 11.464 9.631 0.71 65.18 ? C3 8YM 401 B 1 HETATM 14 C C7 8YM . . . C 2 -41.489 11.312 9.941 0.71 73.05 ? C7 8YM 401 B 1 HETATM 15 C C8 8YM . . . C 2 -43.297 13.017 11.084 0.71 72.36 ? C8 8YM 401 B 1 HETATM 16 C C9 8YM . . . C 2 -42.521 14.17 11.066 0.71 73.36 ? C9 8YM 401 B 1 HETATM 17 O O1 8YM . . . C 2 -44.544 10.512 12.989 0.71 62.08 ? O1 8YM 401 B 1 HETATM 18 O O2 8YM . . . C 2 -46.074 11.58 11.803 0.71 73.99 ? O2 8YM 401 B 1 HETATM 19 S S 8YM . . . C 2 -43.154 11.912 9.699 0.71 76.95 ? S 8YM 401 B 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 19 #