data_5V6V # _model_server_result.job_id k16tBh4oIunrZdztpHPdqQ _model_server_result.datetime_utc '2024-11-22 04:32:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v6v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 5V6V # _exptl.entry_id 5V6V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.34 _cell.angle_beta 81.44 _cell.angle_gamma 76.86 _cell.entry_id 5V6V _cell.length_a 33.23 _cell.length_b 39.17 _cell.length_c 62.34 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V6V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 F C26 8YA . A 8YA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? covale ? covale2 B SG CYS 13 B CYS 12 1_555 M C26 8YA . B 8YA 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc2 A OE1 GLU 64 A GLU 63 1_555 E CA CA . A CA 203 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc3 A OE2 GLU 64 A GLU 63 1_555 E CA CA . A CA 203 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc4 A O GLY 139 A GLY 138 1_555 E CA CA . A CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc5 C O2B GDP . A GDP 201 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc6 D CA CA . A CA 202 1_555 N O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc7 D CA CA . A CA 202 1_555 N O HOH . A HOH 340 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc8 D CA CA . A CA 202 1_555 N O HOH . A HOH 348 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc9 D CA CA . A CA 202 1_555 N O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc10 E CA CA . A CA 203 1_555 N O HOH . A HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc11 E CA CA . A CA 203 1_555 N O HOH . A HOH 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc12 E CA CA . A CA 203 1_555 N O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc13 E CA CA . A CA 203 1_555 N O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc14 N O HOH . A HOH 350 1_555 G CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc15 N O HOH . A HOH 388 1_555 G CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc16 B O GLU 4 B GLU 3 1_555 K CA CA . B CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc17 B OG SER 18 B SER 17 1_555 I CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc18 B OE1 GLU 64 B GLU 63 1_555 J CA CA . B CA 204 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc19 B OE2 GLU 64 B GLU 63 1_555 J CA CA . B CA 204 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc20 B OE1 GLU 77 B GLU 76 1_555 K CA CA . B CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc21 B OE2 GLU 77 B GLU 76 1_555 K CA CA . B CA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc22 B OD1 ASP 109 B ASP 108 1_555 G CA CA . B CA 201 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc23 B O GLY 139 B GLY 138 1_555 J CA CA . B CA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc24 G CA CA . B CA 201 1_555 O O HOH . B HOH 400 1_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc25 H O1B GDP . B GDP 202 1_555 I CA CA . B CA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc26 I CA CA . B CA 203 1_555 O O HOH . B HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc27 I CA CA . B CA 203 1_555 O O HOH . B HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc28 I CA CA . B CA 203 1_555 O O HOH . B HOH 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc29 I CA CA . B CA 203 1_555 O O HOH . B HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc30 J CA CA . B CA 204 1_555 O O HOH . B HOH 310 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc31 J CA CA . B CA 204 1_555 O O HOH . B HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc32 J CA CA . B CA 204 1_555 O O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 143 n n PB O2B GDP sing 144 n n PB O3B GDP sing 145 n n PB O3A GDP sing 146 n n O2B HOB2 GDP sing 147 n n O3B HOB3 GDP sing 148 n n O3A PA GDP sing 149 n n PA O1A GDP doub 150 n n PA O2A GDP sing 151 n n PA O5' GDP sing 152 n n O2A HOA2 GDP sing 153 n n O5' C5' GDP sing 154 n n C5' C4' GDP sing 155 n n C5' H5' GDP sing 156 n n C5' "H5''" GDP sing 157 n n C4' O4' GDP sing 158 n n C4' C3' GDP sing 159 n n C4' H4' GDP sing 160 n n O4' C1' GDP sing 161 n n C3' O3' GDP sing 162 n n C3' C2' GDP sing 163 n n C3' H3' GDP sing 164 n n O3' HO3' GDP sing 165 n n C2' O2' GDP sing 166 n n C2' C1' GDP sing 167 n n C2' H2' GDP sing 168 n n O2' HO2' GDP sing 169 n n C1' N9 GDP sing 170 n n C1' H1' GDP sing 171 n n N9 C8 GDP sing 172 n y N9 C4 GDP sing 173 n y C8 N7 GDP doub 174 n y C8 H8 GDP sing 175 n n N7 C5 GDP sing 176 n y C5 C6 GDP sing 177 n n C5 C4 GDP doub 178 n y C6 O6 GDP doub 179 n n C6 N1 GDP sing 180 n n N1 C2 GDP sing 181 n n N1 HN1 GDP sing 182 n n C2 N2 GDP sing 183 n n C2 N3 GDP doub 184 n n N2 HN21 GDP sing 185 n n N2 HN22 GDP sing 186 n n N3 C4 GDP sing 187 n n # _atom_sites.entry_id 5V6V _atom_sites.fract_transf_matrix[1][1] 0.030093 _atom_sites.fract_transf_matrix[1][2] -0.007025 _atom_sites.fract_transf_matrix[1][3] -0.003238 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026216 _atom_sites.fract_transf_matrix[2][3] -0.005142 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 201 GDP GDP . D 3 CA A 1 202 203 CA CA . E 3 CA A 1 203 204 CA CA . F 4 8YA A 1 204 202 8YA LIG . G 3 CA B 1 201 205 CA CA . H 2 GDP B 1 202 201 GDP GDP . I 3 CA B 1 203 203 CA CA . J 3 CA B 1 204 204 CA CA . K 3 CA B 1 205 205 CA CA . L 5 GOL B 1 206 206 GOL GOL . M 4 8YA B 1 207 202 8YA LIG . N 6 HOH A 1 301 325 HOH HOH . N 6 HOH A 2 302 384 HOH HOH . N 6 HOH A 3 303 411 HOH HOH . N 6 HOH A 4 304 434 HOH HOH . N 6 HOH A 5 305 464 HOH HOH . N 6 HOH A 6 306 354 HOH HOH . N 6 HOH A 7 307 383 HOH HOH . N 6 HOH A 8 308 343 HOH HOH . N 6 HOH A 9 309 442 HOH HOH . N 6 HOH A 10 310 350 HOH HOH . N 6 HOH A 11 311 457 HOH HOH . N 6 HOH A 12 312 332 HOH HOH . N 6 HOH A 13 313 352 HOH HOH . N 6 HOH A 14 314 344 HOH HOH . N 6 HOH A 15 315 355 HOH HOH . N 6 HOH A 16 316 363 HOH HOH . N 6 HOH A 17 317 443 HOH HOH . N 6 HOH A 18 318 305 HOH HOH . N 6 HOH A 19 319 323 HOH HOH . N 6 HOH A 20 320 407 HOH HOH . N 6 HOH A 21 321 375 HOH HOH . N 6 HOH A 22 322 382 HOH HOH . N 6 HOH A 23 323 403 HOH HOH . N 6 HOH A 24 324 311 HOH HOH . N 6 HOH A 25 325 377 HOH HOH . N 6 HOH A 26 326 351 HOH HOH . N 6 HOH A 27 327 435 HOH HOH . N 6 HOH A 28 328 334 HOH HOH . N 6 HOH A 29 329 346 HOH HOH . N 6 HOH A 30 330 445 HOH HOH . N 6 HOH A 31 331 463 HOH HOH . N 6 HOH A 32 332 328 HOH HOH . N 6 HOH A 33 333 468 HOH HOH . N 6 HOH A 34 334 473 HOH HOH . N 6 HOH A 35 335 301 HOH HOH . N 6 HOH A 36 336 353 HOH HOH . N 6 HOH A 37 337 408 HOH HOH . N 6 HOH A 38 338 347 HOH HOH . N 6 HOH A 39 339 307 HOH HOH . N 6 HOH A 40 340 306 HOH HOH . N 6 HOH A 41 341 357 HOH HOH . N 6 HOH A 42 342 388 HOH HOH . N 6 HOH A 43 343 440 HOH HOH . N 6 HOH A 44 344 398 HOH HOH . N 6 HOH A 45 345 390 HOH HOH . N 6 HOH A 46 346 454 HOH HOH . N 6 HOH A 47 347 415 HOH HOH . N 6 HOH A 48 348 303 HOH HOH . N 6 HOH A 49 349 338 HOH HOH . N 6 HOH A 50 350 399 HOH HOH . N 6 HOH A 51 351 317 HOH HOH . N 6 HOH A 52 352 349 HOH HOH . N 6 HOH A 53 353 316 HOH HOH . N 6 HOH A 54 354 458 HOH HOH . N 6 HOH A 55 355 396 HOH HOH . N 6 HOH A 56 356 416 HOH HOH . N 6 HOH A 57 357 318 HOH HOH . N 6 HOH A 58 358 304 HOH HOH . N 6 HOH A 59 359 362 HOH HOH . N 6 HOH A 60 360 444 HOH HOH . N 6 HOH A 61 361 389 HOH HOH . N 6 HOH A 62 362 302 HOH HOH . N 6 HOH A 63 363 459 HOH HOH . N 6 HOH A 64 364 359 HOH HOH . N 6 HOH A 65 365 326 HOH HOH . N 6 HOH A 66 366 447 HOH HOH . N 6 HOH A 67 367 418 HOH HOH . N 6 HOH A 68 368 356 HOH HOH . N 6 HOH A 69 369 417 HOH HOH . N 6 HOH A 70 370 372 HOH HOH . N 6 HOH A 71 371 402 HOH HOH . N 6 HOH A 72 372 360 HOH HOH . N 6 HOH A 73 373 335 HOH HOH . N 6 HOH A 74 374 314 HOH HOH . N 6 HOH A 75 375 374 HOH HOH . N 6 HOH A 76 376 368 HOH HOH . N 6 HOH A 77 377 337 HOH HOH . N 6 HOH A 78 378 369 HOH HOH . N 6 HOH A 79 379 336 HOH HOH . N 6 HOH A 80 380 313 HOH HOH . N 6 HOH A 81 381 321 HOH HOH . N 6 HOH A 82 382 406 HOH HOH . N 6 HOH A 83 383 358 HOH HOH . N 6 HOH A 84 384 471 HOH HOH . N 6 HOH A 85 385 364 HOH HOH . N 6 HOH A 86 386 437 HOH HOH . N 6 HOH A 87 387 393 HOH HOH . N 6 HOH A 88 388 472 HOH HOH . N 6 HOH A 89 389 431 HOH HOH . N 6 HOH A 90 390 392 HOH HOH . N 6 HOH A 91 391 341 HOH HOH . N 6 HOH A 92 392 339 HOH HOH . N 6 HOH A 93 393 345 HOH HOH . N 6 HOH A 94 394 421 HOH HOH . N 6 HOH A 95 395 413 HOH HOH . N 6 HOH A 96 396 436 HOH HOH . N 6 HOH A 97 397 319 HOH HOH . N 6 HOH A 98 398 365 HOH HOH . N 6 HOH A 99 399 401 HOH HOH . N 6 HOH A 100 400 397 HOH HOH . N 6 HOH A 101 401 348 HOH HOH . N 6 HOH A 102 402 340 HOH HOH . N 6 HOH A 103 403 380 HOH HOH . N 6 HOH A 104 404 308 HOH HOH . N 6 HOH A 105 405 370 HOH HOH . N 6 HOH A 106 406 383 HOH HOH . N 6 HOH A 107 407 324 HOH HOH . N 6 HOH A 108 408 414 HOH HOH . N 6 HOH A 109 409 333 HOH HOH . N 6 HOH A 110 410 343 HOH HOH . N 6 HOH A 111 411 385 HOH HOH . N 6 HOH A 112 412 420 HOH HOH . N 6 HOH A 113 413 456 HOH HOH . N 6 HOH A 114 414 460 HOH HOH . N 6 HOH A 115 415 329 HOH HOH . N 6 HOH A 116 416 404 HOH HOH . N 6 HOH A 117 417 366 HOH HOH . N 6 HOH A 118 418 312 HOH HOH . N 6 HOH A 119 419 391 HOH HOH . N 6 HOH A 120 420 331 HOH HOH . N 6 HOH A 121 421 361 HOH HOH . N 6 HOH A 122 422 387 HOH HOH . N 6 HOH A 123 423 405 HOH HOH . N 6 HOH A 124 424 430 HOH HOH . N 6 HOH A 125 425 315 HOH HOH . N 6 HOH A 126 426 379 HOH HOH . N 6 HOH A 127 427 411 HOH HOH . N 6 HOH A 128 428 327 HOH HOH . N 6 HOH A 129 429 428 HOH HOH . N 6 HOH A 130 430 320 HOH HOH . N 6 HOH A 131 431 451 HOH HOH . N 6 HOH A 132 432 455 HOH HOH . N 6 HOH A 133 433 441 HOH HOH . N 6 HOH A 134 434 400 HOH HOH . N 6 HOH A 135 435 467 HOH HOH . N 6 HOH A 136 436 423 HOH HOH . N 6 HOH A 137 437 462 HOH HOH . N 6 HOH A 138 438 330 HOH HOH . N 6 HOH A 139 439 367 HOH HOH . N 6 HOH A 140 440 310 HOH HOH . N 6 HOH A 141 441 466 HOH HOH . N 6 HOH A 142 442 408 HOH HOH . N 6 HOH A 143 443 309 HOH HOH . N 6 HOH A 144 444 446 HOH HOH . N 6 HOH A 145 445 461 HOH HOH . N 6 HOH A 146 446 348 HOH HOH . N 6 HOH A 147 447 424 HOH HOH . N 6 HOH A 148 448 476 HOH HOH . N 6 HOH A 149 449 453 HOH HOH . N 6 HOH A 150 450 465 HOH HOH . N 6 HOH A 151 451 429 HOH HOH . N 6 HOH A 152 452 407 HOH HOH . N 6 HOH A 153 453 410 HOH HOH . N 6 HOH A 154 454 439 HOH HOH . N 6 HOH A 155 455 448 HOH HOH . N 6 HOH A 156 456 373 HOH HOH . N 6 HOH A 157 457 322 HOH HOH . N 6 HOH A 158 458 432 HOH HOH . N 6 HOH A 159 459 422 HOH HOH . N 6 HOH A 160 460 378 HOH HOH . N 6 HOH A 161 461 341 HOH HOH . N 6 HOH A 162 462 427 HOH HOH . N 6 HOH A 163 463 409 HOH HOH . N 6 HOH A 164 464 395 HOH HOH . O 6 HOH B 1 301 352 HOH HOH . O 6 HOH B 2 302 384 HOH HOH . O 6 HOH B 3 303 475 HOH HOH . O 6 HOH B 4 304 355 HOH HOH . O 6 HOH B 5 305 347 HOH HOH . O 6 HOH B 6 306 309 HOH HOH . O 6 HOH B 7 307 374 HOH HOH . O 6 HOH B 8 308 474 HOH HOH . O 6 HOH B 9 309 402 HOH HOH . O 6 HOH B 10 310 329 HOH HOH . O 6 HOH B 11 311 364 HOH HOH . O 6 HOH B 12 312 301 HOH HOH . O 6 HOH B 13 313 315 HOH HOH . O 6 HOH B 14 314 333 HOH HOH . O 6 HOH B 15 315 319 HOH HOH . O 6 HOH B 16 316 371 HOH HOH . O 6 HOH B 17 317 325 HOH HOH . O 6 HOH B 18 318 307 HOH HOH . O 6 HOH B 19 319 318 HOH HOH . O 6 HOH B 20 320 409 HOH HOH . O 6 HOH B 21 321 313 HOH HOH . O 6 HOH B 22 322 370 HOH HOH . O 6 HOH B 23 323 391 HOH HOH . O 6 HOH B 24 324 342 HOH HOH . O 6 HOH B 25 325 340 HOH HOH . O 6 HOH B 26 326 303 HOH HOH . O 6 HOH B 27 327 306 HOH HOH . O 6 HOH B 28 328 376 HOH HOH . O 6 HOH B 29 329 345 HOH HOH . O 6 HOH B 30 330 338 HOH HOH . O 6 HOH B 31 331 346 HOH HOH . O 6 HOH B 32 332 305 HOH HOH . O 6 HOH B 33 333 406 HOH HOH . O 6 HOH B 34 334 339 HOH HOH . O 6 HOH B 35 335 356 HOH HOH . O 6 HOH B 36 336 419 HOH HOH . O 6 HOH B 37 337 322 HOH HOH . O 6 HOH B 38 338 368 HOH HOH . O 6 HOH B 39 339 327 HOH HOH . O 6 HOH B 40 340 351 HOH HOH . O 6 HOH B 41 341 311 HOH HOH . O 6 HOH B 42 342 314 HOH HOH . O 6 HOH B 43 343 330 HOH HOH . O 6 HOH B 44 344 395 HOH HOH . O 6 HOH B 45 345 302 HOH HOH . O 6 HOH B 46 346 398 HOH HOH . O 6 HOH B 47 347 405 HOH HOH . O 6 HOH B 48 348 304 HOH HOH . O 6 HOH B 49 349 362 HOH HOH . O 6 HOH B 50 350 349 HOH HOH . O 6 HOH B 51 351 380 HOH HOH . O 6 HOH B 52 352 381 HOH HOH . O 6 HOH B 53 353 334 HOH HOH . O 6 HOH B 54 354 317 HOH HOH . O 6 HOH B 55 355 353 HOH HOH . O 6 HOH B 56 356 320 HOH HOH . O 6 HOH B 57 357 365 HOH HOH . O 6 HOH B 58 358 308 HOH HOH . O 6 HOH B 59 359 326 HOH HOH . O 6 HOH B 60 360 332 HOH HOH . O 6 HOH B 61 361 386 HOH HOH . O 6 HOH B 62 362 393 HOH HOH . O 6 HOH B 63 363 321 HOH HOH . O 6 HOH B 64 364 336 HOH HOH . O 6 HOH B 65 365 358 HOH HOH . O 6 HOH B 66 366 312 HOH HOH . O 6 HOH B 67 367 414 HOH HOH . O 6 HOH B 68 368 415 HOH HOH . O 6 HOH B 69 369 316 HOH HOH . O 6 HOH B 70 370 470 HOH HOH . O 6 HOH B 71 371 403 HOH HOH . O 6 HOH B 72 372 344 HOH HOH . O 6 HOH B 73 373 324 HOH HOH . O 6 HOH B 74 374 378 HOH HOH . O 6 HOH B 75 375 366 HOH HOH . O 6 HOH B 76 376 331 HOH HOH . O 6 HOH B 77 377 376 HOH HOH . O 6 HOH B 78 378 382 HOH HOH . O 6 HOH B 79 379 367 HOH HOH . O 6 HOH B 80 380 350 HOH HOH . O 6 HOH B 81 381 323 HOH HOH . O 6 HOH B 82 382 375 HOH HOH . O 6 HOH B 83 383 387 HOH HOH . O 6 HOH B 84 384 372 HOH HOH . O 6 HOH B 85 385 377 HOH HOH . O 6 HOH B 86 386 401 HOH HOH . O 6 HOH B 87 387 335 HOH HOH . O 6 HOH B 88 388 328 HOH HOH . O 6 HOH B 89 389 399 HOH HOH . O 6 HOH B 90 390 388 HOH HOH . O 6 HOH B 91 391 400 HOH HOH . O 6 HOH B 92 392 438 HOH HOH . O 6 HOH B 93 393 394 HOH HOH . O 6 HOH B 94 394 450 HOH HOH . O 6 HOH B 95 395 354 HOH HOH . O 6 HOH B 96 396 389 HOH HOH . O 6 HOH B 97 397 410 HOH HOH . O 6 HOH B 98 398 396 HOH HOH . O 6 HOH B 99 399 371 HOH HOH . O 6 HOH B 100 400 449 HOH HOH . O 6 HOH B 101 401 310 HOH HOH . O 6 HOH B 102 402 360 HOH HOH . O 6 HOH B 103 403 337 HOH HOH . O 6 HOH B 104 404 404 HOH HOH . O 6 HOH B 105 405 392 HOH HOH . O 6 HOH B 106 406 381 HOH HOH . O 6 HOH B 107 407 433 HOH HOH . O 6 HOH B 108 408 469 HOH HOH . O 6 HOH B 109 409 413 HOH HOH . O 6 HOH B 110 410 361 HOH HOH . O 6 HOH B 111 411 397 HOH HOH . O 6 HOH B 112 412 452 HOH HOH . O 6 HOH B 113 413 373 HOH HOH . O 6 HOH B 114 414 412 HOH HOH . O 6 HOH B 115 415 363 HOH HOH . O 6 HOH B 116 416 425 HOH HOH . O 6 HOH B 117 417 359 HOH HOH . O 6 HOH B 118 418 369 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . H 2 0.438 -0.188 -17.973 1 17.55 ? PB GDP 202 B 1 HETATM 2 O O1B GDP . . . H 2 0.534 1.261 -18.442 1 17.1 ? O1B GDP 202 B 1 HETATM 3 O O2B GDP . . . H 2 -0.831 -0.289 -17.02 1 17.41 ? O2B GDP 202 B 1 HETATM 4 O O3B GDP . . . H 2 1.692 -0.619 -17.251 1 19.32 ? O3B GDP 202 B 1 HETATM 5 O O3A GDP . . . H 2 0.128 -1.198 -19.177 1 19.22 ? O3A GDP 202 B 1 HETATM 6 P PA GDP . . . H 2 0.333 -0.976 -20.739 1 19.75 ? PA GDP 202 B 1 HETATM 7 O O1A GDP . . . H 2 -0.561 0.036 -21.325 1 17.96 ? O1A GDP 202 B 1 HETATM 8 O O2A GDP . . . H 2 1.803 -0.684 -21.04 1 22.63 ? O2A GDP 202 B 1 HETATM 9 O O5' GDP . . . H 2 -0.047 -2.389 -21.417 1 17.62 ? O5' GDP 202 B 1 HETATM 10 C C5' GDP . . . H 2 0.615 -3.57 -20.944 1 20.44 ? C5' GDP 202 B 1 HETATM 11 C C4' GDP . . . H 2 0.499 -4.634 -21.961 1 20.78 ? C4' GDP 202 B 1 HETATM 12 O O4' GDP . . . H 2 -0.725 -5.097 -22.038 1 20.46 ? O4' GDP 202 B 1 HETATM 13 C C3' GDP . . . H 2 0.867 -4.083 -23.478 1 23.64 ? C3' GDP 202 B 1 HETATM 14 O O3' GDP . . . H 2 1.572 -5.214 -24.172 1 25.44 ? O3' GDP 202 B 1 HETATM 15 C C2' GDP . . . H 2 -0.218 -3.796 -24.016 1 24.69 ? C2' GDP 202 B 1 HETATM 16 O O2' GDP . . . H 2 -0.144 -3.939 -25.509 1 27.98 ? O2' GDP 202 B 1 HETATM 17 C C1' GDP . . . H 2 -1.284 -4.843 -23.392 1 23.25 ? C1' GDP 202 B 1 HETATM 18 N N9 GDP . . . H 2 -2.492 -4.34 -23.283 1 20.77 ? N9 GDP 202 B 1 HETATM 19 C C8 GDP . . . H 2 -3.001 -3.192 -22.745 1 17.91 ? C8 GDP 202 B 1 HETATM 20 N N7 GDP . . . H 2 -4.336 -3.183 -22.919 1 18.6 ? N7 GDP 202 B 1 HETATM 21 C C5 GDP . . . H 2 -4.684 -4.338 -23.547 1 23.55 ? C5 GDP 202 B 1 HETATM 22 C C6 GDP . . . H 2 -6.036 -4.889 -23.992 1 23.56 ? C6 GDP 202 B 1 HETATM 23 O O6 GDP . . . H 2 -7.069 -4.282 -23.802 1 23.77 ? O6 GDP 202 B 1 HETATM 24 N N1 GDP . . . H 2 -6.097 -6.138 -24.636 1 27.26 ? N1 GDP 202 B 1 HETATM 25 C C2 GDP . . . H 2 -4.916 -6.879 -24.857 1 27.96 ? C2 GDP 202 B 1 HETATM 26 N N2 GDP . . . H 2 -4.985 -8.123 -25.485 1 26.11 ? N2 GDP 202 B 1 HETATM 27 N N3 GDP . . . H 2 -3.635 -6.35 -24.428 1 23.65 ? N3 GDP 202 B 1 HETATM 28 C C4 GDP . . . H 2 -3.544 -5.054 -23.771 1 22.46 ? C4 GDP 202 B 1 HETATM 29 H H5' GDP . . . H 2 1.521 -3.38 -20.79 1 24.53 ? H5' GDP 202 B 1 HETATM 30 H "H5''" GDP . . . H 2 0.191 -3.868 -20.102 1 24.53 ? "H5''" GDP 202 B 1 HETATM 31 H H4' GDP . . . H 2 1.104 -5.366 -21.73 1 24.94 ? H4' GDP 202 B 1 HETATM 32 H H3' GDP . . . H 2 1.457 -3.279 -23.425 1 28.37 ? H3' GDP 202 B 1 HETATM 33 H H2' GDP . . . H 2 -0.491 -2.816 -23.763 1 29.63 ? H2' GDP 202 B 1 HETATM 34 H HO2' GDP . . . H 2 -0.043 -4.823 -25.725 1 33.57 ? HO2' GDP 202 B 1 HETATM 35 H H1' GDP . . . H 2 -1.3 -5.692 -23.93 1 27.9 ? H1' GDP 202 B 1 HETATM 36 H H8 GDP . . . H 2 -2.489 -2.493 -22.344 1 21.49 ? H8 GDP 202 B 1 HETATM 37 H HN1 GDP . . . H 2 -6.904 -6.477 -24.896 1 32.72 ? HN1 GDP 202 B 1 HETATM 38 H HN21 GDP . . . H 2 -4.24 -8.587 -25.638 1 31.33 ? HN21 GDP 202 B 1 HETATM 39 H HN22 GDP . . . H 2 -5.813 -8.462 -25.766 1 31.33 ? HN22 GDP 202 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 39 #