data_5V79
#
_model_server_result.job_id            NeajrZ1BXWpdCqdg3RtpUQ 
_model_server_result.datetime_utc      '2024-11-27 19:26:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v79 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5V79 
#
_exptl.entry_id    5V79 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              330.365 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-phenylacetamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.67 
_cell.angle_gamma         90 
_cell.entry_id            5V79 
_cell.length_a            95.364 
_cell.length_b            85.621 
_cell.length_c            83.865 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V79 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA tetrameric 4 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,G 1 1 
B,F,H 2 1 
A,B,C,D,E,F,G,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -56.458297 0 157.942438 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C14 H14 N6 O2 S' 
_chem_comp.formula_weight    330.365 
_chem_comp.id                8Y4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-phenylacetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C13 N17 8Y4 sing 1 n n 
N19 C11 8Y4 sing 2 n n 
N16 C11 8Y4 doub 3 n n 
N16 C8 8Y4 sing 4 n n 
N17 C8 8Y4 sing 5 n y 
N17 C9 8Y4 sing 6 n y 
C11 N18 8Y4 sing 7 n n 
C8 C7 8Y4 doub 8 n y 
S23 C9 8Y4 sing 9 n n 
S23 C14 8Y4 sing 10 n n 
C9 N15 8Y4 doub 11 n y 
N18 C10 8Y4 sing 12 n n 
C7 N15 8Y4 sing 13 n y 
C7 C10 8Y4 sing 14 n n 
C10 O21 8Y4 doub 15 n n 
C14 C12 8Y4 sing 16 n n 
C12 O22 8Y4 doub 17 n n 
C12 N20 8Y4 sing 18 n n 
N20 C6 8Y4 sing 19 n n 
C4 C6 8Y4 doub 20 n y 
C4 C2 8Y4 sing 21 n y 
C6 C5 8Y4 sing 22 n y 
C2 C1 8Y4 doub 23 n y 
C5 C3 8Y4 doub 24 n y 
C1 C3 8Y4 sing 25 n y 
C1 H1 8Y4 sing 26 n n 
C2 H2 8Y4 sing 27 n n 
C3 H3 8Y4 sing 28 n n 
C4 H4 8Y4 sing 29 n n 
C5 H5 8Y4 sing 30 n n 
C13 H6 8Y4 sing 31 n n 
C13 H7 8Y4 sing 32 n n 
C13 H8 8Y4 sing 33 n n 
C14 H9 8Y4 sing 34 n n 
C14 H10 8Y4 sing 35 n n 
N18 H11 8Y4 sing 36 n n 
N19 H12 8Y4 sing 37 n n 
N19 H13 8Y4 sing 38 n n 
N20 H14 8Y4 sing 39 n n 
#
_atom_sites.entry_id                     5V79 
_atom_sites.fract_transf_matrix[1][1]    0.010486 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003748 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011679 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012663 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 8Y4 A 1 301 2 8Y4 UNL . 
D 3 NO3 A 1 302 1 NO3 NO3 . 
E 3 NO3 A 1 303 2 NO3 NO3 . 
F 2 8Y4 B 1 301 1 8Y4 UNL . 
G 4 HOH A 1 401 18 HOH HOH . 
G 4 HOH A 2 402 72 HOH HOH . 
G 4 HOH A 3 403 3 HOH HOH . 
G 4 HOH A 4 404 107 HOH HOH . 
G 4 HOH A 5 405 31 HOH HOH . 
G 4 HOH A 6 406 64 HOH HOH . 
G 4 HOH A 7 407 47 HOH HOH . 
G 4 HOH A 8 408 53 HOH HOH . 
G 4 HOH A 9 409 35 HOH HOH . 
G 4 HOH A 10 410 74 HOH HOH . 
G 4 HOH A 11 411 48 HOH HOH . 
G 4 HOH A 12 412 17 HOH HOH . 
G 4 HOH A 13 413 73 HOH HOH . 
G 4 HOH A 14 414 61 HOH HOH . 
G 4 HOH A 15 415 29 HOH HOH . 
G 4 HOH A 16 416 91 HOH HOH . 
G 4 HOH A 17 417 93 HOH HOH . 
G 4 HOH A 18 418 88 HOH HOH . 
G 4 HOH A 19 419 9 HOH HOH . 
G 4 HOH A 20 420 55 HOH HOH . 
G 4 HOH A 21 421 40 HOH HOH . 
G 4 HOH A 22 422 117 HOH HOH . 
G 4 HOH A 23 423 2 HOH HOH . 
G 4 HOH A 24 424 76 HOH HOH . 
G 4 HOH A 25 425 79 HOH HOH . 
G 4 HOH A 26 426 60 HOH HOH . 
G 4 HOH A 27 427 30 HOH HOH . 
G 4 HOH A 28 428 1 HOH HOH . 
G 4 HOH A 29 429 28 HOH HOH . 
G 4 HOH A 30 430 8 HOH HOH . 
G 4 HOH A 31 431 58 HOH HOH . 
G 4 HOH A 32 432 4 HOH HOH . 
G 4 HOH A 33 433 38 HOH HOH . 
G 4 HOH A 34 434 98 HOH HOH . 
G 4 HOH A 35 435 6 HOH HOH . 
G 4 HOH A 36 436 41 HOH HOH . 
G 4 HOH A 37 437 86 HOH HOH . 
G 4 HOH A 38 438 92 HOH HOH . 
G 4 HOH A 39 439 101 HOH HOH . 
G 4 HOH A 40 440 36 HOH HOH . 
G 4 HOH A 41 441 111 HOH HOH . 
G 4 HOH A 42 442 62 HOH HOH . 
G 4 HOH A 43 443 33 HOH HOH . 
G 4 HOH A 44 444 108 HOH HOH . 
G 4 HOH A 45 445 95 HOH HOH . 
G 4 HOH A 46 446 116 HOH HOH . 
G 4 HOH A 47 447 89 HOH HOH . 
G 4 HOH A 48 448 85 HOH HOH . 
G 4 HOH A 49 449 5 HOH HOH . 
G 4 HOH A 50 450 43 HOH HOH . 
G 4 HOH A 51 451 39 HOH HOH . 
G 4 HOH A 52 452 51 HOH HOH . 
G 4 HOH A 53 453 44 HOH HOH . 
G 4 HOH A 54 454 84 HOH HOH . 
G 4 HOH A 55 455 66 HOH HOH . 
G 4 HOH A 56 456 67 HOH HOH . 
G 4 HOH A 57 457 45 HOH HOH . 
G 4 HOH A 58 458 10 HOH HOH . 
G 4 HOH A 59 459 83 HOH HOH . 
G 4 HOH A 60 460 94 HOH HOH . 
G 4 HOH A 61 461 7 HOH HOH . 
G 4 HOH A 62 462 49 HOH HOH . 
G 4 HOH A 63 463 82 HOH HOH . 
G 4 HOH A 64 464 63 HOH HOH . 
G 4 HOH A 65 465 77 HOH HOH . 
G 4 HOH A 66 466 109 HOH HOH . 
G 4 HOH A 67 467 78 HOH HOH . 
G 4 HOH A 68 468 87 HOH HOH . 
G 4 HOH A 69 469 68 HOH HOH . 
H 4 HOH B 1 401 24 HOH HOH . 
H 4 HOH B 2 402 32 HOH HOH . 
H 4 HOH B 3 403 110 HOH HOH . 
H 4 HOH B 4 404 75 HOH HOH . 
H 4 HOH B 5 405 11 HOH HOH . 
H 4 HOH B 6 406 20 HOH HOH . 
H 4 HOH B 7 407 57 HOH HOH . 
H 4 HOH B 8 408 46 HOH HOH . 
H 4 HOH B 9 409 50 HOH HOH . 
H 4 HOH B 10 410 54 HOH HOH . 
H 4 HOH B 11 411 26 HOH HOH . 
H 4 HOH B 12 412 104 HOH HOH . 
H 4 HOH B 13 413 13 HOH HOH . 
H 4 HOH B 14 414 42 HOH HOH . 
H 4 HOH B 15 415 16 HOH HOH . 
H 4 HOH B 16 416 113 HOH HOH . 
H 4 HOH B 17 417 14 HOH HOH . 
H 4 HOH B 18 418 56 HOH HOH . 
H 4 HOH B 19 419 103 HOH HOH . 
H 4 HOH B 20 420 115 HOH HOH . 
H 4 HOH B 21 421 71 HOH HOH . 
H 4 HOH B 22 422 25 HOH HOH . 
H 4 HOH B 23 423 37 HOH HOH . 
H 4 HOH B 24 424 21 HOH HOH . 
H 4 HOH B 25 425 102 HOH HOH . 
H 4 HOH B 26 426 22 HOH HOH . 
H 4 HOH B 27 427 112 HOH HOH . 
H 4 HOH B 28 428 90 HOH HOH . 
H 4 HOH B 29 429 69 HOH HOH . 
H 4 HOH B 30 430 19 HOH HOH . 
H 4 HOH B 31 431 96 HOH HOH . 
H 4 HOH B 32 432 52 HOH HOH . 
H 4 HOH B 33 433 100 HOH HOH . 
H 4 HOH B 34 434 27 HOH HOH . 
H 4 HOH B 35 435 23 HOH HOH . 
H 4 HOH B 36 436 114 HOH HOH . 
H 4 HOH B 37 437 70 HOH HOH . 
H 4 HOH B 38 438 59 HOH HOH . 
H 4 HOH B 39 439 15 HOH HOH . 
H 4 HOH B 40 440 105 HOH HOH . 
H 4 HOH B 41 441 80 HOH HOH . 
H 4 HOH B 42 442 12 HOH HOH . 
H 4 HOH B 43 443 106 HOH HOH . 
H 4 HOH B 44 444 97 HOH HOH . 
H 4 HOH B 45 445 65 HOH HOH . 
H 4 HOH B 46 446 81 HOH HOH . 
H 4 HOH B 47 447 99 HOH HOH . 
H 4 HOH B 48 448 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 8Y4 . . . C 2 -24.066 3.348 98.253 1 39.12 ? C1 8Y4 301 A 1 
HETATM 2 C C2 8Y4 . . . C 2 -23.192 2.97 99.25 1 40.38 ? C2 8Y4 301 A 1 
HETATM 3 C C3 8Y4 . . . C 2 -24.583 4.628 98.255 1 40.21 ? C3 8Y4 301 A 1 
HETATM 4 C C4 8Y4 . . . C 2 -22.824 3.862 100.242 1 40.23 ? C4 8Y4 301 A 1 
HETATM 5 C C5 8Y4 . . . C 2 -24.225 5.529 99.239 1 40 ? C5 8Y4 301 A 1 
HETATM 6 C C6 8Y4 . . . C 2 -23.339 5.155 100.241 1 40.89 ? C6 8Y4 301 A 1 
HETATM 7 C C7 8Y4 . . . C 2 -18.296 9.208 103.747 1 26.89 ? C7 8Y4 301 A 1 
HETATM 8 C C8 8Y4 . . . C 2 -17.877 8.86 104.999 1 26.55 ? C8 8Y4 301 A 1 
HETATM 9 C C9 8Y4 . . . C 2 -19.719 7.795 104.435 1 25.91 ? C9 8Y4 301 A 1 
HETATM 10 C C10 8Y4 . . . C 2 -17.53 10.166 103.01 1 26.15 ? C10 8Y4 301 A 1 
HETATM 11 C C11 8Y4 . . . C 2 -16.093 10.17 105.026 1 27.27 ? C11 8Y4 301 A 1 
HETATM 12 C C12 8Y4 . . . C 2 -21.925 6.098 102.077 1 33.78 ? C12 8Y4 301 A 1 
HETATM 13 C C13 8Y4 . . . C 2 -18.749 7.317 106.727 1 25.67 ? C13 8Y4 301 A 1 
HETATM 14 C C14 8Y4 . . . C 2 -22.13 7.079 103.199 1 29.41 ? C14 8Y4 301 A 1 
HETATM 15 N N15 8Y4 . . . C 2 -19.445 8.547 103.386 1 25.99 ? N15 8Y4 301 A 1 
HETATM 16 N N16 8Y4 . . . C 2 -16.801 9.298 105.688 1 26.93 ? N16 8Y4 301 A 1 
HETATM 17 N N17 8Y4 . . . C 2 -18.794 7.953 105.426 1 25.36 ? N17 8Y4 301 A 1 
HETATM 18 N N18 8Y4 . . . C 2 -16.433 10.587 103.733 1 27.24 ? N18 8Y4 301 A 1 
HETATM 19 N N19 8Y4 . . . C 2 -14.953 10.742 105.554 1 26.01 ? N19 8Y4 301 A 1 
HETATM 20 N N20 8Y4 . . . C 2 -23.019 6.142 101.221 1 39.06 ? N20 8Y4 301 A 1 
HETATM 21 O O21 8Y4 . . . C 2 -17.799 10.572 101.887 1 26.47 ? O21 8Y4 301 A 1 
HETATM 22 O O22 8Y4 . . . C 2 -20.924 5.395 101.964 1 34.4 ? O22 8Y4 301 A 1 
HETATM 23 S S23 8Y4 . . . C 2 -21.071 6.711 104.629 1 27.23 ? S23 8Y4 301 A 1 
#
_model_server_stats.io_time_ms              99 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#