data_5V79 # _model_server_result.job_id RiTxS9S-cI4T4sxixkrn1w _model_server_result.datetime_utc '2024-11-24 01:59:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5v79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":301}' # _entry.id 5V79 # _exptl.entry_id 5V79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 330.365 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-phenylacetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.67 _cell.angle_gamma 90 _cell.entry_id 5V79 _cell.length_a 95.364 _cell.length_b 85.621 _cell.length_c 83.865 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 A,B,C,D,E,F,G,H 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -56.458297 0 157.942438 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C14 H14 N6 O2 S' _chem_comp.formula_weight 330.365 _chem_comp.id 8Y4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]-N-phenylacetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 N17 8Y4 sing 1 n n N19 C11 8Y4 sing 2 n n N16 C11 8Y4 doub 3 n n N16 C8 8Y4 sing 4 n n N17 C8 8Y4 sing 5 n y N17 C9 8Y4 sing 6 n y C11 N18 8Y4 sing 7 n n C8 C7 8Y4 doub 8 n y S23 C9 8Y4 sing 9 n n S23 C14 8Y4 sing 10 n n C9 N15 8Y4 doub 11 n y N18 C10 8Y4 sing 12 n n C7 N15 8Y4 sing 13 n y C7 C10 8Y4 sing 14 n n C10 O21 8Y4 doub 15 n n C14 C12 8Y4 sing 16 n n C12 O22 8Y4 doub 17 n n C12 N20 8Y4 sing 18 n n N20 C6 8Y4 sing 19 n n C4 C6 8Y4 doub 20 n y C4 C2 8Y4 sing 21 n y C6 C5 8Y4 sing 22 n y C2 C1 8Y4 doub 23 n y C5 C3 8Y4 doub 24 n y C1 C3 8Y4 sing 25 n y C1 H1 8Y4 sing 26 n n C2 H2 8Y4 sing 27 n n C3 H3 8Y4 sing 28 n n C4 H4 8Y4 sing 29 n n C5 H5 8Y4 sing 30 n n C13 H6 8Y4 sing 31 n n C13 H7 8Y4 sing 32 n n C13 H8 8Y4 sing 33 n n C14 H9 8Y4 sing 34 n n C14 H10 8Y4 sing 35 n n N18 H11 8Y4 sing 36 n n N19 H12 8Y4 sing 37 n n N19 H13 8Y4 sing 38 n n N20 H14 8Y4 sing 39 n n # _atom_sites.entry_id 5V79 _atom_sites.fract_transf_matrix[1][1] 0.010486 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003748 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011679 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012663 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 8Y4 A 1 301 2 8Y4 UNL . D 3 NO3 A 1 302 1 NO3 NO3 . E 3 NO3 A 1 303 2 NO3 NO3 . F 2 8Y4 B 1 301 1 8Y4 UNL . G 4 HOH A 1 401 18 HOH HOH . G 4 HOH A 2 402 72 HOH HOH . G 4 HOH A 3 403 3 HOH HOH . G 4 HOH A 4 404 107 HOH HOH . G 4 HOH A 5 405 31 HOH HOH . G 4 HOH A 6 406 64 HOH HOH . G 4 HOH A 7 407 47 HOH HOH . G 4 HOH A 8 408 53 HOH HOH . G 4 HOH A 9 409 35 HOH HOH . G 4 HOH A 10 410 74 HOH HOH . G 4 HOH A 11 411 48 HOH HOH . G 4 HOH A 12 412 17 HOH HOH . G 4 HOH A 13 413 73 HOH HOH . G 4 HOH A 14 414 61 HOH HOH . G 4 HOH A 15 415 29 HOH HOH . G 4 HOH A 16 416 91 HOH HOH . G 4 HOH A 17 417 93 HOH HOH . G 4 HOH A 18 418 88 HOH HOH . G 4 HOH A 19 419 9 HOH HOH . G 4 HOH A 20 420 55 HOH HOH . G 4 HOH A 21 421 40 HOH HOH . G 4 HOH A 22 422 117 HOH HOH . G 4 HOH A 23 423 2 HOH HOH . G 4 HOH A 24 424 76 HOH HOH . G 4 HOH A 25 425 79 HOH HOH . G 4 HOH A 26 426 60 HOH HOH . G 4 HOH A 27 427 30 HOH HOH . G 4 HOH A 28 428 1 HOH HOH . G 4 HOH A 29 429 28 HOH HOH . G 4 HOH A 30 430 8 HOH HOH . G 4 HOH A 31 431 58 HOH HOH . G 4 HOH A 32 432 4 HOH HOH . G 4 HOH A 33 433 38 HOH HOH . G 4 HOH A 34 434 98 HOH HOH . G 4 HOH A 35 435 6 HOH HOH . G 4 HOH A 36 436 41 HOH HOH . G 4 HOH A 37 437 86 HOH HOH . G 4 HOH A 38 438 92 HOH HOH . G 4 HOH A 39 439 101 HOH HOH . G 4 HOH A 40 440 36 HOH HOH . G 4 HOH A 41 441 111 HOH HOH . G 4 HOH A 42 442 62 HOH HOH . G 4 HOH A 43 443 33 HOH HOH . G 4 HOH A 44 444 108 HOH HOH . G 4 HOH A 45 445 95 HOH HOH . G 4 HOH A 46 446 116 HOH HOH . G 4 HOH A 47 447 89 HOH HOH . G 4 HOH A 48 448 85 HOH HOH . G 4 HOH A 49 449 5 HOH HOH . G 4 HOH A 50 450 43 HOH HOH . G 4 HOH A 51 451 39 HOH HOH . G 4 HOH A 52 452 51 HOH HOH . G 4 HOH A 53 453 44 HOH HOH . G 4 HOH A 54 454 84 HOH HOH . G 4 HOH A 55 455 66 HOH HOH . G 4 HOH A 56 456 67 HOH HOH . G 4 HOH A 57 457 45 HOH HOH . G 4 HOH A 58 458 10 HOH HOH . G 4 HOH A 59 459 83 HOH HOH . G 4 HOH A 60 460 94 HOH HOH . G 4 HOH A 61 461 7 HOH HOH . G 4 HOH A 62 462 49 HOH HOH . G 4 HOH A 63 463 82 HOH HOH . G 4 HOH A 64 464 63 HOH HOH . G 4 HOH A 65 465 77 HOH HOH . G 4 HOH A 66 466 109 HOH HOH . G 4 HOH A 67 467 78 HOH HOH . G 4 HOH A 68 468 87 HOH HOH . G 4 HOH A 69 469 68 HOH HOH . H 4 HOH B 1 401 24 HOH HOH . H 4 HOH B 2 402 32 HOH HOH . H 4 HOH B 3 403 110 HOH HOH . H 4 HOH B 4 404 75 HOH HOH . H 4 HOH B 5 405 11 HOH HOH . H 4 HOH B 6 406 20 HOH HOH . H 4 HOH B 7 407 57 HOH HOH . H 4 HOH B 8 408 46 HOH HOH . H 4 HOH B 9 409 50 HOH HOH . H 4 HOH B 10 410 54 HOH HOH . H 4 HOH B 11 411 26 HOH HOH . H 4 HOH B 12 412 104 HOH HOH . H 4 HOH B 13 413 13 HOH HOH . H 4 HOH B 14 414 42 HOH HOH . H 4 HOH B 15 415 16 HOH HOH . H 4 HOH B 16 416 113 HOH HOH . H 4 HOH B 17 417 14 HOH HOH . H 4 HOH B 18 418 56 HOH HOH . H 4 HOH B 19 419 103 HOH HOH . H 4 HOH B 20 420 115 HOH HOH . H 4 HOH B 21 421 71 HOH HOH . H 4 HOH B 22 422 25 HOH HOH . H 4 HOH B 23 423 37 HOH HOH . H 4 HOH B 24 424 21 HOH HOH . H 4 HOH B 25 425 102 HOH HOH . H 4 HOH B 26 426 22 HOH HOH . H 4 HOH B 27 427 112 HOH HOH . H 4 HOH B 28 428 90 HOH HOH . H 4 HOH B 29 429 69 HOH HOH . H 4 HOH B 30 430 19 HOH HOH . H 4 HOH B 31 431 96 HOH HOH . H 4 HOH B 32 432 52 HOH HOH . H 4 HOH B 33 433 100 HOH HOH . H 4 HOH B 34 434 27 HOH HOH . H 4 HOH B 35 435 23 HOH HOH . H 4 HOH B 36 436 114 HOH HOH . H 4 HOH B 37 437 70 HOH HOH . H 4 HOH B 38 438 59 HOH HOH . H 4 HOH B 39 439 15 HOH HOH . H 4 HOH B 40 440 105 HOH HOH . H 4 HOH B 41 441 80 HOH HOH . H 4 HOH B 42 442 12 HOH HOH . H 4 HOH B 43 443 106 HOH HOH . H 4 HOH B 44 444 97 HOH HOH . H 4 HOH B 45 445 65 HOH HOH . H 4 HOH B 46 446 81 HOH HOH . H 4 HOH B 47 447 99 HOH HOH . H 4 HOH B 48 448 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8Y4 . . . F 2 -3.701 -6.455 74.897 1 47.99 ? C1 8Y4 301 B 1 HETATM 2 C C2 8Y4 . . . F 2 -4.509 -6.167 73.818 1 48.96 ? C2 8Y4 301 B 1 HETATM 3 C C3 8Y4 . . . F 2 -2.402 -5.998 74.919 1 47.46 ? C3 8Y4 301 B 1 HETATM 4 C C4 8Y4 . . . F 2 -4.017 -5.419 72.765 1 49.96 ? C4 8Y4 301 B 1 HETATM 5 C C5 8Y4 . . . F 2 -1.909 -5.255 73.865 1 49.2 ? C5 8Y4 301 B 1 HETATM 6 C C6 8Y4 . . . F 2 -2.713 -4.954 72.78 1 48.07 ? C6 8Y4 301 B 1 HETATM 7 C C7 8Y4 . . . F 2 -3.081 1.264 68.891 1 31.79 ? C7 8Y4 301 B 1 HETATM 8 C C8 8Y4 . . . F 2 -3.649 1.228 67.654 1 31.05 ? C8 8Y4 301 B 1 HETATM 9 C C9 8Y4 . . . F 2 -3.11 -0.776 68.353 1 35.05 ? C9 8Y4 301 B 1 HETATM 10 C C10 8Y4 . . . F 2 -2.912 2.518 69.546 1 30.68 ? C10 8Y4 301 B 1 HETATM 11 C C11 8Y4 . . . F 2 -3.938 3.392 67.482 1 28.91 ? C11 8Y4 301 B 1 HETATM 12 C C12 8Y4 . . . F 2 -2.836 -3.305 70.911 1 42.84 ? C12 8Y4 301 B 1 HETATM 13 C C13 8Y4 . . . F 2 -4.171 -0.617 66.06 1 31.35 ? C13 8Y4 301 B 1 HETATM 14 C C14 8Y4 . . . F 2 -1.955 -2.875 69.766 1 38.4 ? C14 8Y4 301 B 1 HETATM 15 N N15 8Y4 . . . F 2 -2.745 0.016 69.342 1 33.16 ? N15 8Y4 301 B 1 HETATM 16 N N16 8Y4 . . . F 2 -4.095 2.242 66.909 1 29.92 ? N16 8Y4 301 B 1 HETATM 17 N N17 8Y4 . . . F 2 -3.669 -0.088 67.312 1 31.78 ? N17 8Y4 301 B 1 HETATM 18 N N18 8Y4 . . . F 2 -3.379 3.537 68.752 1 30.29 ? N18 8Y4 301 B 1 HETATM 19 N N19 8Y4 . . . F 2 -4.337 4.556 66.87 1 28.6 ? N19 8Y4 301 B 1 HETATM 20 N N20 8Y4 . . . F 2 -2.146 -4.191 71.73 1 45.73 ? N20 8Y4 301 B 1 HETATM 21 O O21 8Y4 . . . F 2 -2.432 2.671 70.66 1 31.98 ? O21 8Y4 301 B 1 HETATM 22 O O22 8Y4 . . . F 2 -3.993 -2.908 71.059 1 42.71 ? O22 8Y4 301 B 1 HETATM 23 S S23 8Y4 . . . F 2 -2.959 -2.503 68.298 1 35.35 ? S23 8Y4 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #