data_5V7A
#
_model_server_result.job_id            wo3Lp3wQR7Jjdgd-YTxmRQ 
_model_server_result.datetime_utc      '2024-11-24 00:32:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5v7a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    5V7A 
#
_exptl.entry_id    5V7A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              255.254 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]acetic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.23 
_cell.angle_gamma         90 
_cell.entry_id            5V7A 
_cell.length_a            95.27 
_cell.length_b            84.83 
_cell.length_c            83.78 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5V7A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,F 1 1 
B,D,E,G 2 1 
A,B,C,D,E,F,G 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_557 -x,y,-z+2 -1 0 0 0 1 0 0 0 -1 -55.187742 0 158.21083 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C8 H9 N5 O3 S' 
_chem_comp.formula_weight    255.254 
_chem_comp.id                8Y7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2-amino-9-methyl-6-oxo-6,9-dihydro-1H-purin-8-yl)sulfanyl]acetic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C7 N11 8Y7 sing 1 n n 
N10 C5 8Y7 doub 2 n n 
N10 C2 8Y7 sing 3 n n 
N13 C5 8Y7 sing 4 n n 
N11 C2 8Y7 sing 5 n y 
N11 C3 8Y7 sing 6 n y 
C5 N12 8Y7 sing 7 n n 
C2 C1 8Y7 doub 8 n y 
S17 C3 8Y7 sing 9 n n 
S17 C8 8Y7 sing 10 n n 
C3 N9 8Y7 doub 11 n y 
N12 C4 8Y7 sing 12 n n 
C1 N9 8Y7 sing 13 n y 
C1 C4 8Y7 sing 14 n n 
C4 O15 8Y7 doub 15 n n 
C8 C6 8Y7 sing 16 n n 
O16 C6 8Y7 doub 17 n n 
C6 O14 8Y7 sing 18 n n 
C7 H1 8Y7 sing 19 n n 
C7 H2 8Y7 sing 20 n n 
C7 H3 8Y7 sing 21 n n 
C8 H4 8Y7 sing 22 n n 
C8 H5 8Y7 sing 23 n n 
N12 H6 8Y7 sing 24 n n 
N13 H7 8Y7 sing 25 n n 
N13 H8 8Y7 sing 26 n n 
O14 H9 8Y7 sing 27 n n 
#
_atom_sites.entry_id                     5V7A 
_atom_sites.fract_transf_matrix[1][1]    0.010497 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003661 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011788 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012641 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 8Y7 A 1 301 2 8Y7 UNL . 
D 3 CL B 1 301 1 CL CL . 
E 2 8Y7 B 1 302 1 8Y7 UNL . 
F 4 HOH A 1 401 97 HOH HOH . 
F 4 HOH A 2 402 23 HOH HOH . 
F 4 HOH A 3 403 43 HOH HOH . 
F 4 HOH A 4 404 17 HOH HOH . 
F 4 HOH A 5 405 70 HOH HOH . 
F 4 HOH A 6 406 62 HOH HOH . 
F 4 HOH A 7 407 31 HOH HOH . 
F 4 HOH A 8 408 57 HOH HOH . 
F 4 HOH A 9 409 39 HOH HOH . 
F 4 HOH A 10 410 8 HOH HOH . 
F 4 HOH A 11 411 34 HOH HOH . 
F 4 HOH A 12 412 61 HOH HOH . 
F 4 HOH A 13 413 99 HOH HOH . 
F 4 HOH A 14 414 106 HOH HOH . 
F 4 HOH A 15 415 36 HOH HOH . 
F 4 HOH A 16 416 94 HOH HOH . 
F 4 HOH A 17 417 38 HOH HOH . 
F 4 HOH A 18 418 98 HOH HOH . 
F 4 HOH A 19 419 69 HOH HOH . 
F 4 HOH A 20 420 53 HOH HOH . 
F 4 HOH A 21 421 74 HOH HOH . 
F 4 HOH A 22 422 52 HOH HOH . 
F 4 HOH A 23 423 44 HOH HOH . 
F 4 HOH A 24 424 33 HOH HOH . 
F 4 HOH A 25 425 58 HOH HOH . 
F 4 HOH A 26 426 48 HOH HOH . 
F 4 HOH A 27 427 59 HOH HOH . 
F 4 HOH A 28 428 42 HOH HOH . 
F 4 HOH A 29 429 27 HOH HOH . 
F 4 HOH A 30 430 75 HOH HOH . 
F 4 HOH A 31 431 67 HOH HOH . 
F 4 HOH A 32 432 22 HOH HOH . 
F 4 HOH A 33 433 96 HOH HOH . 
F 4 HOH A 34 434 1 HOH HOH . 
F 4 HOH A 35 435 37 HOH HOH . 
F 4 HOH A 36 436 54 HOH HOH . 
F 4 HOH A 37 437 65 HOH HOH . 
F 4 HOH A 38 438 29 HOH HOH . 
F 4 HOH A 39 439 2 HOH HOH . 
F 4 HOH A 40 440 66 HOH HOH . 
F 4 HOH A 41 441 50 HOH HOH . 
F 4 HOH A 42 442 56 HOH HOH . 
F 4 HOH A 43 443 55 HOH HOH . 
F 4 HOH A 44 444 51 HOH HOH . 
F 4 HOH A 45 445 49 HOH HOH . 
F 4 HOH A 46 446 100 HOH HOH . 
F 4 HOH A 47 447 68 HOH HOH . 
F 4 HOH A 48 448 26 HOH HOH . 
F 4 HOH A 49 449 24 HOH HOH . 
F 4 HOH A 50 450 105 HOH HOH . 
F 4 HOH A 51 451 30 HOH HOH . 
F 4 HOH A 52 452 77 HOH HOH . 
F 4 HOH A 53 453 102 HOH HOH . 
F 4 HOH A 54 454 64 HOH HOH . 
F 4 HOH A 55 455 60 HOH HOH . 
F 4 HOH A 56 456 71 HOH HOH . 
G 4 HOH B 1 401 81 HOH HOH . 
G 4 HOH B 2 402 89 HOH HOH . 
G 4 HOH B 3 403 78 HOH HOH . 
G 4 HOH B 4 404 93 HOH HOH . 
G 4 HOH B 5 405 10 HOH HOH . 
G 4 HOH B 6 406 15 HOH HOH . 
G 4 HOH B 7 407 91 HOH HOH . 
G 4 HOH B 8 408 79 HOH HOH . 
G 4 HOH B 9 409 85 HOH HOH . 
G 4 HOH B 10 410 9 HOH HOH . 
G 4 HOH B 11 411 16 HOH HOH . 
G 4 HOH B 12 412 103 HOH HOH . 
G 4 HOH B 13 413 7 HOH HOH . 
G 4 HOH B 14 414 14 HOH HOH . 
G 4 HOH B 15 415 95 HOH HOH . 
G 4 HOH B 16 416 19 HOH HOH . 
G 4 HOH B 17 417 20 HOH HOH . 
G 4 HOH B 18 418 104 HOH HOH . 
G 4 HOH B 19 419 28 HOH HOH . 
G 4 HOH B 20 420 32 HOH HOH . 
G 4 HOH B 21 421 63 HOH HOH . 
G 4 HOH B 22 422 84 HOH HOH . 
G 4 HOH B 23 423 11 HOH HOH . 
G 4 HOH B 24 424 88 HOH HOH . 
G 4 HOH B 25 425 25 HOH HOH . 
G 4 HOH B 26 426 40 HOH HOH . 
G 4 HOH B 27 427 101 HOH HOH . 
G 4 HOH B 28 428 4 HOH HOH . 
G 4 HOH B 29 429 6 HOH HOH . 
G 4 HOH B 30 430 72 HOH HOH . 
G 4 HOH B 31 431 12 HOH HOH . 
G 4 HOH B 32 432 41 HOH HOH . 
G 4 HOH B 33 433 86 HOH HOH . 
G 4 HOH B 34 434 80 HOH HOH . 
G 4 HOH B 35 435 46 HOH HOH . 
G 4 HOH B 36 436 5 HOH HOH . 
G 4 HOH B 37 437 13 HOH HOH . 
G 4 HOH B 38 438 35 HOH HOH . 
G 4 HOH B 39 439 21 HOH HOH . 
G 4 HOH B 40 440 82 HOH HOH . 
G 4 HOH B 41 441 73 HOH HOH . 
G 4 HOH B 42 442 90 HOH HOH . 
G 4 HOH B 43 443 3 HOH HOH . 
G 4 HOH B 44 444 45 HOH HOH . 
G 4 HOH B 45 445 18 HOH HOH . 
G 4 HOH B 46 446 92 HOH HOH . 
G 4 HOH B 47 447 83 HOH HOH . 
G 4 HOH B 48 448 76 HOH HOH . 
G 4 HOH B 49 449 87 HOH HOH . 
G 4 HOH B 50 450 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 8Y7 . . . C 2 -17.503 8.736 103.579 1 27.56 ? C1 8Y7 301 A 1 
HETATM 2 C C2 8Y7 . . . C 2 -17.128 8.453 104.862 1 25.93 ? C2 8Y7 301 A 1 
HETATM 3 C C3 8Y7 . . . C 2 -18.95 7.351 104.281 1 27.06 ? C3 8Y7 301 A 1 
HETATM 4 C C4 8Y7 . . . C 2 -16.706 9.649 102.824 1 27.1 ? C4 8Y7 301 A 1 
HETATM 5 C C5 8Y7 . . . C 2 -15.355 9.774 104.881 1 26.8 ? C5 8Y7 301 A 1 
HETATM 6 C C6 8Y7 . . . C 2 -20.796 5.443 101.922 1 28.54 ? C6 8Y7 301 A 1 
HETATM 7 C C7 8Y7 . . . C 2 -18.088 6.99 106.635 1 28.87 ? C7 8Y7 301 A 1 
HETATM 8 C C8 8Y7 . . . C 2 -21.286 6.421 102.985 1 25.76 ? C8 8Y7 301 A 1 
HETATM 9 N N9 8Y7 . . . C 2 -18.631 8.053 103.209 1 28.91 ? N9 8Y7 301 A 1 
HETATM 10 N N10 8Y7 . . . C 2 -16.072 8.934 105.57 1 27.79 ? N10 8Y7 301 A 1 
HETATM 11 N N11 8Y7 . . . C 2 -18.071 7.571 105.303 1 26.25 ? N11 8Y7 301 A 1 
HETATM 12 N N12 8Y7 . . . C 2 -15.648 10.106 103.567 1 28.13 ? N12 8Y7 301 A 1 
HETATM 13 N N13 8Y7 . . . C 2 -14.239 10.399 105.381 1 24.73 ? N13 8Y7 301 A 1 
HETATM 14 O O14 8Y7 . . . C 2 -19.854 4.646 102.189 1 28.39 ? O14 8Y7 301 A 1 
HETATM 15 O O15 8Y7 . . . C 2 -16.9 10.018 101.68 1 25.76 ? O15 8Y7 301 A 1 
HETATM 16 O O16 8Y7 . . . C 2 -21.433 5.575 100.845 1 28.76 ? O16 8Y7 301 A 1 
HETATM 17 S S17 8Y7 . . . C 2 -20.292 6.253 104.496 1 30.29 ? S17 8Y7 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           17 
#